3300003402: Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_solids_1

Overview

Basic Information

• IMG/M Taxon OID: 3300003402
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118793 | Gp0095080 | Ga0041901
• Sample Name: Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_solids_1
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 226815378
• Sequencing Scaffolds: 6
• Novel Protein Genes: 7
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	3
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Wastewater Bioreactor Microbial Communities From Cape Town, South Africa
• Type: Engineered
• Taxonomy: Engineered → Bioremediation → Hydrocarbon → Unclassified → Unclassified → Wastewater Bioreactor → Wastewater Bioreactor Microbial Communities From Cape Town, South Africa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: South Africa: Cape Town
• Coordinates
  • Lat. (^o): -33.936637
  • Long. (^o): 18.478905
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000135	Metagenome / Metatranscriptome	1961	Y
F007832	Metagenome / Metatranscriptome	344	Y
F021521	Metagenome / Metatranscriptome	218	Y
F064866	Metagenome / Metatranscriptome	128	Y
F069970	Metagenome	123	Y
F074177	Metagenome	120	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI26528J50254_1000059	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae	96635
JGI26528J50254_1000139	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	61875
JGI26528J50254_1001294	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae	14117
JGI26528J50254_1009045	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	3108
JGI26528J50254_1029698	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1304
JGI26528J50254_1030422	Not Available	1281

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI26528J50254_1000059	JGI26528J50254_100005981	F021521	MASYLYHTAQPPTLAAFRPWGSSAGAGRIRLATAKIKQLHQKEK*
JGI26528J50254_1000139	JGI26528J50254_10001394	F074177	MKNQSYQSKSALSLFFSHLAKNFIALFESGNKREFQRLKDFIAS*
JGI26528J50254_1001294	JGI26528J50254_100129412	F069970	MTTHLTNAIKVGDRVIFDISWVEKFKAETSSSDKAVKQYQQLVLGGIDQAGVVKELGGNLTTVAYPDGWVLPVPTKYLIVLQSREDILMVI*
JGI26528J50254_1009045	JGI26528J50254_10090453	F069970	MNTLHPKQAIKTGDKVIFDTDKIEVFKAETGGPDEAIRQYRQLVLGGVDQIGIVKEFGNNLTTVSYPDGWDLPVPTKYLIVLPEES*
JGI26528J50254_1009655	JGI26528J50254_10096556	F000135	MWFQLRSPELAEEFEDLMAGDRDIVRGSLDTVSEWRLARPADVPGQAIGQADYVLIVEFVGIERFEQQASERVESLADDLDHLVSSRGMLVLRSVF*
JGI26528J50254_1029698	JGI26528J50254_10296983	F064866	MKAPYLCWLVSISALLYPYISSAQWDENNSLGRYSYPIFAVTGKQQFTGTAFFYRSGDTTFLVSNYHAIKGMSPLKKTITFNSDTLYLKYSVKDSGGSKVLPIDVSDAAIGETEIFSMVDRIDLLKIPMELPGDADIHFINDLVDPAYFNAVPEEVVVFGFPTGPGNIPPFYSQQQILAGQVNQQGFADYDASLKVNFPGSSDSARAILSGTARYYYFIKPYAAQGYSGAPVFGKFRTAEGQVIYRFSGVIFAGQPMTRQTWAIKGSVALQ
JGI26528J50254_1030422	JGI26528J50254_10304221	F007832	VLFLADIFPGGGSPVADVFAIAIALFLFALLFWVIDLIDRI*