3300001840: Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Shallow Sites - gte1kb - lt4kb

Overview

Basic Information

• IMG/M Taxon OID: 3300001840
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0094242 | Gp0055816 | Ga0016884
• Sample Name: Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Shallow Sites - gte1kb - lt4kb
• Sequencing Status: Permanent Draft
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 146151029
• Sequencing Scaffolds: 47
• Novel Protein Genes: 53
• Associated Families: 50

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria	3
Not Available	28
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp.	1
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → alpha proteobacterium SCGC AAA536-G10	1
All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Candidatus Poseidoniia → Candidatus Poseidoniales → Candidatus Poseidoniaceae → unclassified Candidatus Poseidoniaceae → Candidatus Poseidoniaceae archaeon	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexi incertae sedis → SAR202 cluster → SAR202 cluster bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Hydrothermal Vent Plume Microbial Communities From The Cayman Rise, Cayman Islands
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Cayman Rise, Cayman Islands

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine hydrothermal vent biome → marine hydrothermal plume → hydrothermal fluid
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Mid Cayman Rise, Cayman Islands
• Coordinates
  • Lat. (^o): 18.35
  • Long. (^o): -81.85
  • Alt. (m): N/A
  • Depth (m): 2000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001651	Metagenome / Metatranscriptome	657	Y
F002006	Metagenome / Metatranscriptome	605	Y
F002030	Metagenome	601	Y
F002715	Metagenome / Metatranscriptome	535	Y
F002753	Metagenome / Metatranscriptome	532	Y
F004642	Metagenome / Metatranscriptome	429	Y
F004881	Metagenome / Metatranscriptome	420	Y
F005399	Metagenome / Metatranscriptome	402	Y
F005400	Metagenome / Metatranscriptome	402	Y
F005610	Metagenome / Metatranscriptome	395	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
shallow_1004411	All Organisms → cellular organisms → Bacteria → Proteobacteria	3162
shallow_1005257	Not Available	3056
shallow_1006736	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	2896
shallow_1007070	Not Available	2858
shallow_1008716	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2705
shallow_1010295	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	3158
shallow_1011270	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	2504
shallow_1011374	Not Available	2497
shallow_1012844	Not Available	2394
shallow_1014049	Not Available	2323

Sequences

Scaffold ID	Protein ID	Family	Sequence
shallow_1004411	shallow_10044111	F010693	MTGLLIFGLVVLATICLWILIEERKSWKFLVWFIPILLVVVTSTYVTYTSLLGFPKVGIPEKGMYLRHYIDEPNWIYLWVLSKKNVPMSYQLVYTKKKHD
shallow_1004411	shallow_10044116	F005400	LIDTNMCYRCSYCDQGFNQIYSLNQLAIEYFICDRCVKYYKLTIKDLIELRYVRDRQEWQDADCWPGKGFFPYPIGFDE*
shallow_1005257	shallow_10052573	F018808	MSEYTPIQTVKHSSVIREGDDSELNAIRIDEGKFKGLIYLYEDVMMGEETKEGGMNLHFTIKHAKWENTNHLDNEKEFHQVAGDILVSCLEKGLKEDNEFEIIYRDNDTRSLDDQRRVRKESLTLSED*
shallow_1006736	shallow_10067362	F038276	MNLDFLLRLTNYVNNVGTNYLAVIKQFLTVLVIINHACVLLHGNHNYKDVFYDRLSNQYIRNACDFHNLHISYNNLGLVLEKFLLYIKIINNKV*
shallow_1007070	shallow_10070706	F101330	VSLCGFIGVCIGYFTGHQEICIMIGVGIGILIRFVQSKSK*
shallow_1008716	shallow_10087162	F105349	MKTLVFQSKIGEGSLTWDRRDMSQLKIDHLIIENCLTSVQSWCKKLGYEYKFVTQDLKWNFEFLSKNDVQLNCAFQNWTHLPKEGYDQIIYLDNDVFIFKDAGSPPIVDFGLVCRFGDQIQYARHYCGNNSLWWNSGVIVMSQKRCKHLSSWMLDYIPRAREFQLFRDLPREESLITEYCAKYKPNKLDPIWNTMPPQTPVPMYSEAKFIHLLGASKLNTLLKCPKEIQKVVMKNIDISEKTTESSVGEALNWQ*
shallow_1010295	shallow_10102952	F052659	MLLSGNPGTETRSAVFIDGRLISSELNYQTIDKLQQGGVPDKVSWMKPSLRGRLRLVKLQAQERNLTIEDLNQSIRSKWVILWAEV*
shallow_1011270	shallow_10112704	F019664	VKDTDDDKQVDGSDEGAIPSTSTNLRGPYDGIFEFSEKQREYYYTQREWDRTIGYGKVPDEGNTEIRGVKQDRRTDETLFEESDT*
shallow_1011374	shallow_10113741	F022431	MIAKYIANKFLPVGTPVFHKLGDGELLSLIGWAEDWPLERVYDIAFEQVFPEKQLVDSKPDFDEWLTADNPKLPMIVREELIRAFRIHMATGRMDVLRLGVMLSTYAKRIM
shallow_1012844	shallow_10128441	F084712	MKTFKEYSLDRKLDKYVSDEIKKRKLAKHPVNATDDIKMRMKPNKPAFKFPSPTGSMMIH
shallow_1014049	shallow_10140493	F092223	MADTSINKGLILSLLVGFLVQAGGFVWWMSGLNSEVQRLSGIQGVSIPALKAEAKLSGITIQNNEAAIKELQEHDKAISGLDVLNFKVEQLRDEIATLREVNREIMTQHEKIFDWMSMNSGGNSGGGSNPYGSSYGN*
shallow_1015721	shallow_10157211	F085813	CNLKNNCVTKMDEFEIIWILVTVIGALNYGLNAYQKGFRRLLKWDVIYLIILNTLMFVPLSLIVVF*
shallow_1020011	shallow_10200114	F080654	VVAEVISEETAESEPVGKTDLEERQNLWNKIHKFDPEASAMDYYDNSEWDLEKMRSDLKVLLEKEKFGR*
shallow_1021495	shallow_10214952	F015945	MMPDTPTEAEIAAHFSAMDDSVTLIHATIADDTDALKMMDAAEVKLMVTRNTDHLEIQSAKDWYSESSNSKTPYTEAVTAGKAYVAE*
shallow_1024200	shallow_10242003	F062834	GDMAAAGDAFMAAADARRGDAWQQAKTDYAQRAFKEVDLGPVSAGQDTGITGDPAEVED*
shallow_1025874	shallow_10258745	F024888	MNLDKIDLKNIHKIVGKIVDGIQKEEMKGKTPDEFAQERGFDNWLEYAAWSRHTGGDYHMMEMMLKSKWKEQDPEEFARQKKIEGDQRTREHSYIGILDEEKIKKKNNGHKYYKPVHKSEFSAEELEVIYDERGVGGEPVEYRW*
shallow_1026353	shallow_10263531	F082824	MKKKISERLMTTKQQVGQMNRYWKDLDHLASDDVKKKNMDRRFGIRNIKLDRYGNIISFDKYKRG
shallow_1026353	shallow_10263532	F005610	MYKMKTFKEYLTEADSEEVRDAKKVFTALQGMYPKIPKFPLVFKNLKGRGSGYLETSKLKGGKFIFVDKMVIDDSGLGSFEPDYAVVHEFAHAILAVTKGDLGHNKKHADLTYKLAQKFGLA*
shallow_1026753	shallow_10267537	F002030	MIGLLIFGLVVLSTVFLWILIEERKSWKFLVWFIPVFLVLVTSTYVTYTSILGFPKVGIPEKGLYLRHYIDEPNWIYLWVLSKKNVPMSYQLVYSREKHNALEGVKGQAAEGAFMVLGEDESLGPGDGEGDQKGGRSGEGYTIGGDISFYKWDFTDNMPLKDTQE*
shallow_1029280	shallow_10292804	F049215	MYAAYLVSCTEPMEYVTRELTIWNKYVSNGYDNYDDEIEVNLKLGSRDWFWLYDSGDRVKIYSNSSFTWQFEFHEDFDSLYVHARFYYTKDLIIELVVADTALRMDSDKTLMFWNCGDTTVVEYPFPACFTEVDSL*
shallow_1031697	shallow_10316972	F074979	MEIKVYIHDNKNIEASSKILKLLKDCKLDFATEVFGHFKSDEEAYIANVVGEKVKKLPHVVIDGERVGGYYDLVEYLMKKNIINYAGEPTWKMNN*
shallow_1031697	shallow_10316974	F051978	MEYTIYASLILITLMCLWALISIPKNYLFKSLLIPVMILVAVSTWYTYNAILGYGTEFKPTQEVIYHSHVADKKADKIYVLLTTFGDDAPRLHIYPWSEELEKQLEGADGQKKAGILVVGVIKKNDSAQNRPMSDDEPYQFYIMPPNEFMPKDS*
shallow_1031715	shallow_10317152	F004881	MSYTFFETPGKPYQECTNPNDPEDKSLCVLVQDGSNFDGAIVRYTTFKLLEQELTGGEIACRYEYEIEVPPHAIKHKITDEEGKEFEKKLGKWVIEILQKQMDKHAAKSRSTDTEKSNT*
shallow_1031874	shallow_10318741	F062842	MMKWMLIIVLASALSLNGCADTADAEDSTAITPVDNQESTDSSTDSSGETIWIAIVMTWNPVNRTIDKEFTTEVACWNYYENGVGEGKFGTQHLDHQDNPPTKDFNFGPDH
shallow_1033178	shallow_10331781	F017150	DWLQDSIVIENVIMGQAHDQLIVELEQAVYDNTRSMYNPPSSHISIVGFSPADSDVVVKSGVNYWVDSDNIFAQ*
shallow_1033638	shallow_10336382	F071317	MLKKITAIGLITLFAGMTAAPFIPLDDCNMPCCAGIATSCCEMDREITCATMSDCGSSVFMLIVSGPFHKSELKSSDIFSQRFVTDLGIPKIETNYIACLGNFDPGPIASMNLPLLI*
shallow_1036453	shallow_10364533	F042379	MIFADGWTQSINTSDEGQERADLATYISDTFKGINGFRPRWWNLNTWALEDLRAEAKSLEDEVVVSIERERAEEARRQAEMADHHLAVAKAMKPVSPTFKPFANLKEMLV*
shallow_1038056	shallow_10380565	F005399	MKAAIELDVFQEVKLDEDTGEIVMRPMAEMMDAPLDFIDEEDEPEWTSLLQVLTETIIDPYTVPASTEVPNEKDYHMIVAASEDLFKVAGDFARKVEGLHTIDPKEYEERISRFEQGTFWPTEEQKMHMEEHGPGPNEER*
shallow_1038545	shallow_10385455	F042560	LIFAPSVKLRKKGKFPIVSMVTKNNIKEFIKVAIMLVFHISSWQ*
shallow_1040067	shallow_10400671	F095744	VGYIRIHLVSVLTYLTSSLQTSLQNQTKREGYEKDDYNN
shallow_1041021	shallow_10410212	F004642	LTIVLFLYLLIMDKPAFSETVPNELKELGYVPPIIKSYDKNGINVWLDKRRKWYDVPFWQFTMDGVQWMVLDERHGSASQFYSHYKLAKGHVICTGLGFGTREQWLASKPEVTKITVLEKFKEVIDYHKDIGTKWPDKIEIINCDANDYKGSCNFLSIYDDVLRILDSIKKVCNNITCESAWFWMLEPWIRLGYITDNTENPTIIPKKIRYGGKENDILENYSKIKTYFEHVNLPNLNKEQLIKFIEMY*
shallow_1042037	shallow_10420371	F054098	FCASSMLRHVNGIVKEVETANQSNSQGAADADVQAEESQAKERAWE*
shallow_1044403	shallow_10444032	F054945	MKWVILIYLAMWTNTPEVMKYTVLEFPAYDYYDCIDIAEEINDIETAYNSETAYVRSFYWVYNNMLDDIKAECVYADPIATPPKWFKEYTRKQWLEKFEHE*
shallow_1047411	shallow_10474111	F007241	RTGTVTIKNISRAMLISEISWSMLVSANSPTDVKTINGIVITHSKLIIAVSDIESATSPFAKEVNKLDVTPPGAAAIIITPIANSGAIGHIHIFKRIKAIIGSKIICEKVPTKKSRDCLATLKKSPPVSPNPNANIMKANAKGKNTSVTIPINIIIIRVL*
shallow_1048228	shallow_10482282	F037771	VVRTACPALVVFDGYRGLHDGDRTAAAGLKALLGCEDSTYWNNWSERGDSLKRRFDRASAWLEVRLGNITDVNVIGLSMGCQLAVRFVHHASIKAPSIEFGQLVLIAPDPKYRAVGRDAEEIKVGTSSAFEEAVALWGGRGLAGPRFVSGLADAANRMERTRIVYCRSDGVAEWSANVELMVDELPATTGIELIEAIDGEVISTADMTVDLGVANPELDVHDRLWESISFV*
shallow_1048874	shallow_10488742	F089571	MMNMVKEKERKMLQNIIVLIISVLFLITPVSSQHVKQKYAITDKDEKVFLNDNGTWEYLGEDKQNYTLKKVPPKTYNYEFKPQTWEERLEQAAHEYWRIRAYAELNQLGIPVTRYDPTTSDVPLYLKLEGGRIRTDFDPFTPLARGEVINIAGLWNPDRGDNPTLKIQGKLFLQITMKLVDQKKLFSQYNQRNYIPISEDFQRILKFRDSLDVISLGMHDYNRDNTHIWPGIPHSFLYAPPGSPYDPDNPPVIRGDGFPYIQRGHLTLARREIPMTNAE
shallow_1052807	shallow_10528071	F051978	MEYTIYASLIFITLMCLWAIISIPKNYLFKSLLVPAMIGIAISTWYTYNAILGYGTEFKPPEEVIYHSHVADKKAGKIYVLLTTFGEGEPRLHIYPWSEELEKQLRGADGQNRGGVLVVGIIKKNKVAHSKLMPG
shallow_1052982	shallow_10529822	F092699	MLKPKIPMIVIAAFLILNAVMMIAIPVAFDKDYIEADMENPTTEEGQVYEGLAAHNKAGLGAAMAALAIVLLMHINQPERAAKRVLLSVGIGMILLFIVIGLGGVRGLVDAPPLVPIIMGAIIGGVSIWVYNSPDEKELITSDEEE*
shallow_1054213	shallow_10542131	F058220	GVRHGEPWRPNQPLVDALLETEHPVFVWSGGGAWYAEIIAGKLGLDFPCLDKYETAFELIHEGDVVIDDQDLGGRRTHNPFEWPETKGRLNPNQL*
shallow_1054936	shallow_10549362	F002715	MPEEELQSVKLEVGLLKNEVEVRGRQIDTLLTKLDHTADKLQELTVEIKTLNARQEDYLRANISMSDEFKILHTRIGDVQDKLSSNNRRIEERLDHLDQYKSKLMGMIIVVGGVVGTIVATAISIFLKE*
shallow_1055139	shallow_10551393	F001651	QRRHRVIQAKIEGRSEAEIAEQEGVAQYTIWKDIRAYLGEVRREDKEAVQAEYDLQRARYERLLLRWWDHAIGEDSDHAARATGIVLDILRRLDTIGGLIPEKPLIQLQQQNVMVGGVTFADLLREAMDGTGA*
shallow_1056568	shallow_10565682	F015945	MFDTPTEAEIAAHFSAMNDSVTLINATVADDSEALLIYGNDAEVKLMVTRNTDHLEIQAAKDWYSDSSNSKTSYTGAVTAGKAYVDE*
shallow_1060956	shallow_10609561	F002006	MPEELQSVKLQVGLLQQEVEARGRQIDALLSKLDSTADKIVELTVEIKTLNSRQERHSKVDDEIRSELKLLHSRAGSIHDEIGKSERRVSDSIHKLEERVRAVEQWKSRLMGMTSLVAG
shallow_1062564	shallow_10625643	F023622	MKTFKEFQGKTPTQKIVEQVYFKVSIPDLSPMFMKASSESAVKLDMRMKLKPDVVKEISIKRVTKAEMRKIYRAMGQGKEPESDEKEKEE*
shallow_1065675	shallow_10656752	F060977	MKKLLMALMIMLPVSAYALSVNVENDVNVSVGGATFGVDQGGNKVSVGVSGLTFSTSDTVDFGVAYSTSLLGGLEAGLSYDYTNESDHVVGVDTSFEYVGINLDADFDWNITDTDFDAKLGTGYTLLGVDGSVTSKWDVDDFSYEGMDVTAGYTWAVTDTFSVRPNLTVPFDDGFSRGDLTAGVSISLSFGGTSTE*
shallow_1069742	shallow_10697421	F068126	MVVALILNGCAKNVADKNNDLGSGDKSNLPISLNSLIEHAELCKAIYDL
shallow_1070172	shallow_10701721	F022431	YLAKKVVPAGAPNFHQLGDGELLSLIGWAEKWPLERVYDTAFEQVFPTKQLSDAKTDFGVWLMADNPKLPTIVREELIRAFRIHMATGRMDVLRLGVMAQRYAKRAMYVGLLLLFLFLVF
shallow_1070315	shallow_10703152	F035361	MNPALSSAGIVDMMVGVQNMIEASDIQKGDQILILADRRSDPVTVEALSVGLTALGAHPMELVTEPIGRYGVIPQPVINAMEASDVVIWVWPVFLTFTAAYRAMGRKREESGTQLKEARLKPYFVYFEGGPALLARDYAK
shallow_1071031	shallow_10710312	F096818	LVAYGAGRAAANRTIYPTGWPPYGGGTSKVWGPSRLVYGAKIAFEKWWLWRYF*
shallow_1077063	shallow_10770633	F096028	TISVDFRVDWASFELIDGDFHSHSFGGSVKRNDLMLDEN*
shallow_1079076	shallow_10790762	F031644	MNERIPVTWEDIAWSNMYSIEAVINILEAKGLITKKEVLKELKRIKIKQHKEIN*
shallow_1081125	shallow_10811253	F023712	MYKLTWKDEDTNRVSSKEFTGQSGVDHSAMDDALAMAQVVDGNLWPWSLERDGQEISYGWGGEQLNRGRLFPTCG*
shallow_1082554	shallow_10825542	F002753	LIXXXXFTPAAFEIESVKLTVSDRFTPAVFEIESVKLTVSDRFTPSVFDMESVNDTVSDRFTPAAFEIESVNNTVSDRFTPAALDVSSVNDTDSDRFTPADFAIESVKLTDSDRFTPATFDIESVKLTDSDRFTPADFAIESVNDTDSCP*