Metagenome Family F096818

Basic Information
Family ID	F096818
Family Type	Metagenome
Number of Sequences	104
Average Sequence Length	46 residues
Representative Sequence	RAAANRTTYPTGWPPFGATEPRTWGPSRMIYWAKIGFEKWWLWRYF
Number of Associated Samples	94
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	84.62 %
% of genes from short scaffolds (< 2000 bps)	83.65 %
Associated GOLD sequencing projects	90
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.36

Most Common Taxonomy
Group	Bacteria (62.500 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (9.615 % of family members)
Environment Ontology (ENVO)	Unclassified (25.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (29.808 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 24.32% β-sheet: 0.00% Coil/Unstructured: 75.68%
Feature Viewer

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Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF07992	Pyr_redox_2	6.73
PF09976	TPR_21	5.77
PF13432	TPR_16	4.81
PF00890	FAD_binding_2	3.85
PF02190	LON_substr_bdg	3.85
PF00701	DHDPS	3.85
PF02577	BFN_dom	3.85
PF13174	TPR_6	2.88
PF04199	Cyclase	1.92
PF02597	ThiS	1.92
PF04055	Radical_SAM	1.92
PF03401	TctC	1.92
PF07366	SnoaL	0.96
PF03928	HbpS-like	0.96
PF01977	UbiD	0.96
PF13676	TIR_2	0.96
PF00753	Lactamase_B	0.96
PF13428	TPR_14	0.96
PF06577	EipA	0.96
PF13175	AAA_15	0.96
PF01807	zf-CHC2	0.96
PF02780	Transketolase_C	0.96
PF02826	2-Hacid_dh_C	0.96
PF13429	TPR_15	0.96
PF04273	BLH_phosphatase	0.96
PF07728	AAA_5	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG0329	4-hydroxy-tetrahydrodipicolinate synthase/N-acetylneuraminate lyase	Cell wall/membrane/envelope biogenesis [M]	7.69
COG1259	Bifunctional DNase/RNase	General function prediction only [R]	3.85
COG1878	Kynurenine formamidase	Amino acid transport and metabolism [E]	1.92
COG1977	Molybdopterin synthase sulfur carrier subunit MoaD	Coenzyme transport and metabolism [H]	1.92
COG2104	Sulfur carrier protein ThiS (thiamine biosynthesis)	Coenzyme transport and metabolism [H]	1.92
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	1.92
COG0043	3-polyprenyl-4-hydroxybenzoate decarboxylase	Coenzyme transport and metabolism [H]	0.96
COG0358	DNA primase (bacterial type)	Replication, recombination and repair [L]	0.96
COG3453	Predicted phosphohydrolase, protein tyrosine phosphatase (PTP) superfamily, DUF442 family	General function prediction only [R]	0.96

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	62.50 %
Unclassified	root	N/A	37.50 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	62.50 %
Unclassified	root	N/A	37.50 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	62.50 %
Unclassified	root	N/A	37.50 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.50 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	29.81 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	1.92 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.50 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	25.00 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.92 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	1.92 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.50 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	25.00 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.96 %
Candidatus Poribacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria	0.96 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.96 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.50 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	20.19 %
unclassified Candidatus Poribacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria → unclassified Candidatus Poribacteria	0.96 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	0.96 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.96 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.50 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	18.27 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.96 %
Candidatus Poribacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria → unclassified Candidatus Poribacteria → Candidatus Poribacteria bacterium	0.96 %
Deltaproteobacteria bacterium RIFCSPLOWO2_12_FULL_60_19	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RIFCSPLOWO2_12_FULL_60_19	0.96 %
Deltaproteobacteria bacterium RIFCSPLOWO2_12_55_13	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RIFCSPLOWO2_12_55_13	0.96 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.96 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2084038009\|LWFCA_GLZZ6Z001BAB4D	All Organisms → cellular organisms → Bacteria	510	Open in IMG/M
2088090009\|LWAnN_GIDYKCY01BMO3S	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	518	Open in IMG/M
3300000205\|NICFPass4XylDRAFT_c026922	Not Available	772	Open in IMG/M
3300000891\|JGI10214J12806_12946728	All Organisms → cellular organisms → Bacteria	585	Open in IMG/M
3300000956\|JGI10216J12902_122123046	Not Available	541	Open in IMG/M
3300001781\|Deep_1051506	All Organisms → cellular organisms → Bacteria	849	Open in IMG/M
3300001840\|shallow_1071031	All Organisms → cellular organisms → Bacteria	1069	Open in IMG/M
3300002121\|C687J26615_10097969	Not Available	735	Open in IMG/M
3300002124\|C687J26631_10047387	All Organisms → cellular organisms → Bacteria	1502	Open in IMG/M
3300002147\|JGI24793J26633_1026591	Not Available	1229	Open in IMG/M
3300002529\|C687J35504_10088301	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RIFCSPLOWO2_12_55_13	1398	Open in IMG/M
3300002558\|JGI25385J37094_10193139	All Organisms → cellular organisms → Bacteria	545	Open in IMG/M
3300002561\|JGI25384J37096_10181105	All Organisms → cellular organisms → Bacteria	633	Open in IMG/M
3300002908\|JGI25382J43887_10134469	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1273	Open in IMG/M
3300003319\|soilL2_10184924	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3937	Open in IMG/M
3300003702\|PicMicro_10002430	All Organisms → cellular organisms → Bacteria	22514	Open in IMG/M
3300004480\|Ga0062592_101264269	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	694	Open in IMG/M
3300004779\|Ga0062380_10258162	All Organisms → cellular organisms → Bacteria	724	Open in IMG/M
3300004782\|Ga0062382_10245012	All Organisms → cellular organisms → Bacteria	800	Open in IMG/M
3300005093\|Ga0062594_101129763	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	769	Open in IMG/M
3300005180\|Ga0066685_11073074	Not Available	528	Open in IMG/M
3300005339\|Ga0070660_100047813	All Organisms → cellular organisms → Bacteria → Proteobacteria	3284	Open in IMG/M
3300005366\|Ga0070659_102102519	Not Available	507	Open in IMG/M
3300005529\|Ga0070741_10000016	All Organisms → cellular organisms → Bacteria	625103	Open in IMG/M
3300005713\|Ga0066905_101437881	Not Available	625	Open in IMG/M
3300005764\|Ga0066903_104961320	Not Available	706	Open in IMG/M
3300005830\|Ga0074473_11183804	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1000	Open in IMG/M
3300006031\|Ga0066651_10342471	Not Available	802	Open in IMG/M
3300006845\|Ga0075421_100035343	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	6327	Open in IMG/M
3300006847\|Ga0075431_100139878	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2495	Open in IMG/M
3300006852\|Ga0075433_10265361	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1522	Open in IMG/M
3300006854\|Ga0075425_100559727	All Organisms → cellular organisms → Bacteria	1316	Open in IMG/M
3300006865\|Ga0073934_10000656	All Organisms → cellular organisms → Bacteria	96312	Open in IMG/M
3300009087\|Ga0105107_11026277	All Organisms → cellular organisms → Bacteria	574	Open in IMG/M
3300009157\|Ga0105092_10493982	Not Available	701	Open in IMG/M
3300009157\|Ga0105092_10732128	Not Available	577	Open in IMG/M
3300009162\|Ga0075423_10173359	Not Available	2265	Open in IMG/M
3300009162\|Ga0075423_10313698	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1644	Open in IMG/M
3300009162\|Ga0075423_10605904	All Organisms → cellular organisms → Bacteria	1154	Open in IMG/M
3300009444\|Ga0114945_10074917	All Organisms → cellular organisms → Bacteria	1874	Open in IMG/M
3300009514\|Ga0129284_10209133	All Organisms → cellular organisms → Bacteria	871	Open in IMG/M
3300009609\|Ga0105347_1309347	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	665	Open in IMG/M
3300009786\|Ga0114999_10837112	Not Available	677	Open in IMG/M
3300010323\|Ga0134086_10173170	Not Available	796	Open in IMG/M
3300010359\|Ga0126376_12206468	Not Available	596	Open in IMG/M
3300010360\|Ga0126372_10950267	All Organisms → cellular organisms → Bacteria	867	Open in IMG/M
3300010361\|Ga0126378_11200131	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria → unclassified Candidatus Poribacteria → Candidatus Poribacteria bacterium	857	Open in IMG/M
3300010361\|Ga0126378_12318149	Not Available	613	Open in IMG/M
3300010362\|Ga0126377_10635076	Not Available	1115	Open in IMG/M
3300010366\|Ga0126379_11991514	Not Available	683	Open in IMG/M
3300010376\|Ga0126381_102386018	Not Available	759	Open in IMG/M
3300010376\|Ga0126381_104111134	Not Available	565	Open in IMG/M
3300010397\|Ga0134124_12945048	Not Available	520	Open in IMG/M
3300010398\|Ga0126383_10104770	All Organisms → cellular organisms → Bacteria	2537	Open in IMG/M
3300010401\|Ga0134121_11135395	Not Available	777	Open in IMG/M
3300012179\|Ga0137334_1040321	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	971	Open in IMG/M
3300012179\|Ga0137334_1060792	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	816	Open in IMG/M
3300012356\|Ga0137371_10840822	Not Available	699	Open in IMG/M
3300012361\|Ga0137360_10568918	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	969	Open in IMG/M
3300012971\|Ga0126369_13225648	Not Available	534	Open in IMG/M
3300013296\|Ga0157374_12245279	Not Available	573	Open in IMG/M
3300013306\|Ga0163162_13065776	Not Available	537	Open in IMG/M
3300014745\|Ga0157377_10093328	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1781	Open in IMG/M
3300015372\|Ga0132256_101620605	Not Available	757	Open in IMG/M
3300015372\|Ga0132256_102427028	Not Available	627	Open in IMG/M
3300015372\|Ga0132256_103470934	Not Available	530	Open in IMG/M
3300015373\|Ga0132257_100978616	Not Available	1064	Open in IMG/M
3300018031\|Ga0184634_10489442	Not Available	550	Open in IMG/M
3300018031\|Ga0184634_10510438	Not Available	536	Open in IMG/M
3300018063\|Ga0184637_10255142	All Organisms → cellular organisms → Bacteria	1068	Open in IMG/M
3300018067\|Ga0184611_1073915	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1162	Open in IMG/M
3300018075\|Ga0184632_10300052	All Organisms → cellular organisms → Bacteria	695	Open in IMG/M
3300018077\|Ga0184633_10187574	All Organisms → cellular organisms → Bacteria → Proteobacteria	1070	Open in IMG/M
3300018079\|Ga0184627_10503784	All Organisms → cellular organisms → Bacteria	624	Open in IMG/M
3300018082\|Ga0184639_10538989	Not Available	582	Open in IMG/M
3300018481\|Ga0190271_10879520	All Organisms → cellular organisms → Bacteria	1020	Open in IMG/M
3300020022\|Ga0193733_1104530	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	789	Open in IMG/M
3300025160\|Ga0209109_10120491	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RIFCSPLOWO2_12_FULL_60_19	1340	Open in IMG/M
3300025167\|Ga0209642_10158286	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1310	Open in IMG/M
3300025310\|Ga0209172_10000953	All Organisms → cellular organisms → Bacteria	70096	Open in IMG/M
3300025311\|Ga0209343_10127391	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2057	Open in IMG/M
3300025322\|Ga0209641_11120375	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	500	Open in IMG/M
3300025326\|Ga0209342_10098449	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2702	Open in IMG/M
3300025903\|Ga0207680_10915333	Not Available	628	Open in IMG/M
3300025910\|Ga0207684_11369079	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	580	Open in IMG/M
3300025920\|Ga0207649_11579550	Not Available	519	Open in IMG/M
3300025932\|Ga0207690_10346738	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1173	Open in IMG/M
3300026297\|Ga0209237_1256972	Not Available	536	Open in IMG/M
3300026334\|Ga0209377_1001891	All Organisms → cellular organisms → Bacteria	13804	Open in IMG/M
3300027682\|Ga0209971_1020853	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1559	Open in IMG/M
3300027831\|Ga0209797_10148658	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1008	Open in IMG/M
3300027909\|Ga0209382_10053586	All Organisms → cellular organisms → Bacteria	4800	Open in IMG/M
3300027909\|Ga0209382_11062201	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	839	Open in IMG/M
3300027951\|Ga0209754_1006420	All Organisms → cellular organisms → Bacteria → Proteobacteria	6096	Open in IMG/M
3300030606\|Ga0299906_11081883	All Organisms → cellular organisms → Bacteria	583	Open in IMG/M
(restricted) 3300031197\|Ga0255310_10062665	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	978	Open in IMG/M
3300031965\|Ga0326597_10613029	Not Available	1162	Open in IMG/M
3300032003\|Ga0310897_10644680	Not Available	527	Open in IMG/M
3300032163\|Ga0315281_12135184	All Organisms → cellular organisms → Bacteria	532	Open in IMG/M
3300032261\|Ga0306920_100180372	All Organisms → cellular organisms → Bacteria	3150	Open in IMG/M
3300032278\|Ga0310345_10607371	All Organisms → cellular organisms → Bacteria	1054	Open in IMG/M
3300033412\|Ga0310810_10185886	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2368	Open in IMG/M
3300033414\|Ga0316619_11365770	Not Available	631	Open in IMG/M
3300034820\|Ga0373959_0095324	All Organisms → cellular organisms → Bacteria	702	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	75.00%
Host-Associated	Host-Associated	24.04%
Engineered	Engineered	0.96%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	45.19%
Aquatic	Environmental → Aquatic	29.81%
Plants	Host-Associated → Plants	22.12%
Porifera	Host-Associated → Porifera	1.92%
Solid Waste	Engineered → Solid Waste	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	45.19%
Rhizosphere	Host-Associated → Plants → Rhizosphere	19.23%
Sediment	Environmental → Aquatic → Sediment	11.54%
Freshwater	Environmental → Aquatic → Freshwater	9.62%
Marine	Environmental → Aquatic → Marine	4.81%
Thermal Springs	Environmental → Aquatic → Thermal Springs	2.88%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.88%
Unclassified	Host-Associated → Porifera → Unclassified	1.92%
Unclassified	Environmental → Aquatic → Unclassified	0.96%
Feedstock	Engineered → Solid Waste → Feedstock	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	34.62%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	11.54%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	10.58%
Loam	Environmental → Terrestrial → Soil → Loam	8.65%
Soil	Host-Associated → Plants → Rhizosphere → Soil	8.65%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.88%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.88%
Hydrothermal Vents	Environmental → Aquatic → Marine → Hydrothermal Vents	2.88%
Lentic	Environmental → Aquatic → Freshwater → Lentic	1.92%
Oceanic	Environmental → Aquatic → Marine → Oceanic	1.92%
Sediment	Environmental → Aquatic → Thermal Springs → Sediment	1.92%
Unclassified	Host-Associated → Porifera → Unclassified → Unclassified	1.92%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.92%
Lake	Environmental → Aquatic → Freshwater → Lake	0.96%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.96%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.96%
Unclassified	Environmental → Aquatic → Unclassified → Unclassified	0.96%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.96%
Sand	Environmental → Terrestrial → Soil → Sand	0.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.96%
Composting	Engineered → Solid Waste → Feedstock → Composting	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	21.15%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	11.54%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	10.58%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	8.65%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	8.65%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	5.77%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.88%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	2.88%
Unclassified	Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified	2.88%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.88%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	1.92%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	1.92%
Unclassified	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified	1.92%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.92%
Unclassified	Host-Associated → Porifera → Unclassified → Unclassified → Unclassified	1.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.92%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.96%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.96%
Unclassified	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified	0.96%
Unclassified	Environmental → Aquatic → Unclassified → Unclassified → Unclassified	0.96%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.96%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.96%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.96%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.96%
Unclassified	Engineered → Solid Waste → Feedstock → Composting → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	9.62%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	8.65%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	7.69%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	5.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.81%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	3.85%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	2.88%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	2.88%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	2.88%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	2.88%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Sediment	1.92%
Hydrothermal Vent Plume	Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume	1.92%
Hot Spring Sediment	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment	1.92%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.92%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.92%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.92%
Host-Associated	Host-Associated → Porifera → Unclassified → Unclassified → Unclassified → Host-Associated	1.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.92%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.96%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater	0.96%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	0.96%
Seawater	Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater	0.96%
Marine, Hydrothermal Vent Plume	Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Marine, Hydrothermal Vent Plume	0.96%
Thermal Springs	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Thermal Springs	0.96%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.96%
Beach Aquifer Porewater	Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Beach Aquifer Porewater	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.96%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.96%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.96%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.96%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	0.96%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.96%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.96%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.96%
Feedstock Adapted Compost	Engineered → Solid Waste → Feedstock → Composting → Unclassified → Feedstock Adapted Compost	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2084038009	Freshwater sediment microbial communities from Lake Washington, Seattle, for methane and nitrogen Cycles - from flow sorted aerobic no nitrate	Environmental	Open in IMG/M
2088090009	Freshwater sediment microbial communities from Lake Washington, Seattle, for methane and nitrogen Cycles - SIP 13C-methane anaerobic+nitrate	Environmental	Open in IMG/M
3300000205	Feedstock adapted compost microbial communities from Newby Island compost facility, Milpitas, CA, USA - Passage 4_Xylan	Engineered	Open in IMG/M
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001781	Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Deep Sites	Environmental	Open in IMG/M
3300001840	Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Shallow Sites - gte1kb - lt4kb	Environmental	Open in IMG/M
3300002121	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_1	Environmental	Open in IMG/M
3300002124	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_3	Environmental	Open in IMG/M
3300002147	Host-associated microbial community of the marine sponge Aplysina aerophoba from Gulf of Piran - sponge mesohyl, lysed by freeze-thaw cycling	Host-Associated	Open in IMG/M
3300002529	Soil microbial communities from Rifle, Colorado - Rifle CSP2_plank highO2_0.2	Environmental	Open in IMG/M
3300002558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm	Environmental	Open in IMG/M
3300002561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm	Environmental	Open in IMG/M
3300002908	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300003319	Sugarcane bulk soil Sample L2	Environmental	Open in IMG/M
3300003702	Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Microbial Assembly	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004779	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T0Bare3Fresh	Environmental	Open in IMG/M
3300004782	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare2Fresh	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005830	Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.178_YBM	Environmental	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006865	Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaG	Environmental	Open in IMG/M
3300009087	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009157	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009444	Hot spring microbial communities from Beatty, Nevada to study Microbial Dark Matter (Phase II) - OV2 TP3	Environmental	Open in IMG/M
3300009514	Microbial community of beach aquifer porewater from Cape Shores, Lewes, Delaware, USA - F-1W	Environmental	Open in IMG/M
3300009609	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890	Environmental	Open in IMG/M
3300009786	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_126	Environmental	Open in IMG/M
3300010323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300012179	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT262_2	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300018031	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1	Environmental	Open in IMG/M
3300018063	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b2	Environmental	Open in IMG/M
3300018067	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex	Environmental	Open in IMG/M
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental	Open in IMG/M
3300018077	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b1	Environmental	Open in IMG/M
3300018079	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b1	Environmental	Open in IMG/M
3300018082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b2	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300020022	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1s2	Environmental	Open in IMG/M
3300025160	Soil microbial communities from Rifle, Colorado, USA - sediment 10ft 2	Environmental	Open in IMG/M
3300025167	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 19_2 (SPAdes)	Environmental	Open in IMG/M
3300025310	Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaG (SPAdes)	Environmental	Open in IMG/M
3300025311	Groundwater microbial communities from Rifle, Colorado - Rifle CSP2_plank lowO2_0.2 (SPAdes)	Environmental	Open in IMG/M
3300025322	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 16_1 (SPAdes)	Environmental	Open in IMG/M
3300025326	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 16_2 (SPAdes)	Environmental	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026297	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026334	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141 (SPAdes)	Environmental	Open in IMG/M
3300027682	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S AM (SPAdes)	Host-Associated	Open in IMG/M
3300027831	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T0Bare3Fresh (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300027951	Host-associated microbial community of the marine sponge Aplysina aerophoba from Gulf of Piran - sponge mesohyl, lysed by bead beating (SPAdes)	Host-Associated	Open in IMG/M
3300030606	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT145D125	Environmental	Open in IMG/M
3300031197 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH1_T0_E1	Environmental	Open in IMG/M
3300031965	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT100D185	Environmental	Open in IMG/M
3300032003	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D1	Environmental	Open in IMG/M
3300032163	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_0	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032278	Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-500_MG	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M
3300033414	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D4_B	Environmental	Open in IMG/M
3300034820	Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_2	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
LWFCA_05592620	2084038009	Freshwater Sediment	LACGAGRAAANRTTYPTGWPPFGVTDPRTLGPSKLIYWAKIGFEKWWLWR
LWAnN_04095750	2088090009	Freshwater Sediment	AANRTTYPTGWPPFGVTDPRTLGPSKLIYWAKIGFEKWWLWRYF
NICFPass4XylDRAFT_0269222	3300000205	Feedstock Adapted Compost	LLAYGAGSAAANRTIYPRGWPPHGTGVSRSWGPSPLLYWAKVGFEKWWLWRYF
JGI10214J12806_129467281	3300000891	Soil	GWPPFGVTDPRTWGPNRAIYWAKVGFEKWWLWRYF*
JGI10216J12902_1221230461	3300000956	Soil	AFGAGRAAANRTTYPTGWPPFGVTDPRTLGPSKLIYWAKIGFEKWWLWRYF*
Deep_10515061	3300001781	Hydrothermal Vent Plume	YGAGRAAANRTIYPTGWPPYGAGTSKVWGPSRLVYGAKIAFEKWWLWRYF*
shallow_10710312	3300001840	Hydrothermal Vent Plume	LVAYGAGRAAANRTIYPTGWPPYGGGTSKVWGPSRLVYGAKIAFEKWWLWRYF*
C687J26615_100979693	3300002121	Soil	GRAAANRTTYPQGWPPFGTTEPRTWGPSRSIYWAKIAFEKWWLWRYF*
C687J26631_100473873	3300002124	Soil	GWPPFGVTEPRTWGPSRLIYWAKIGFEKWWLWRYF*
JGI24793J26633_10265912	3300002147	Host-Associated	ANRTTYPQGWPPFGATDSRSWGPSRTIYWSKVLFEKWWLWRYF*
C687J35504_100883011	3300002529	Soil	AGRAAANRTIYPRGWPTFGATEARTWGPSRSIYWAKILFEKWWLWRYF*
JGI25385J37094_101931391	3300002558	Grasslands Soil	PPYDMLLAYGAGRAAANRTIYPQGWPPFGATDARTWGPSRWIYWAKVGFEKWWLWRYF*
JGI25384J37096_101811052	3300002561	Grasslands Soil	YGAGRAAANRTIYPQGWPPFGATDARTWGPSRWIYWAKVGFEKWWLWRYF*
JGI25382J43887_101344691	3300002908	Grasslands Soil	IYPQGWPPFGATDARTWGPSRWIYWAKVGFEKWWLWRYF*
soilL2_101849247	3300003319	Sugarcane Root And Bulk Soil	MNRTIYPQGWPPFAPSYARTWGPSPFIYWAKVMFEKWWLWRYF*
PicMicro_1000243017	3300003702	Marine, Hydrothermal Vent Plume	VAYGAGRAAANRTIYPTGWPPYGAGTSKVWGPSRLVYGAKIAFEKWWLWRYF*
Ga0062592_1012642692	3300004480	Soil	NRTTYPTGWPPFGATDPRTLGPSRLIYWAKLGFEKWWLWRYF*
Ga0062380_102581622	3300004779	Wetland Sediment	RTTYPTSWPPFGVTDPRTWGPNKAIYWAKIGFEKWWLWRYF*
Ga0062382_102450123	3300004782	Wetland Sediment	HHMTLAYGAGRAAANRTTYPTGWPPFGVTDPRTWGPNKAIYWAKLGFEKWWLWRYF*
Ga0062594_1011297631	3300005093	Soil	LAFGAGRAAANRTTYPTGWPPYGVTDPRTWGPSRMIYWAKIGFEKWWLWRYF*
Ga0066685_110730742	3300005180	Soil	ANRTTYPNGWPPFGTGSSRTWGPSPLIYLAKLGFEKWWLWRYF*
Ga0070660_1000478135	3300005339	Corn Rhizosphere	NRTTYPTGWPPFGVTEPRTWGPSRMIYWAKIGFEKWWLWRYF*
Ga0070659_1021025191	3300005366	Corn Rhizosphere	GAGRAAANRTTYPTGWPPFGVTEPRTWGPSRMIYWAKIGFEKWWLWRYF*
Ga0070741_10000016404	3300005529	Surface Soil	MNRTIYPSGWPPFAATEARTWGPSPFIYWAKIGFEKWWLWRYF*
Ga0066905_1014378811	3300005713	Tropical Forest Soil	GRAAANRTTYPTGWPAFGATESRTWGPSRLIYWAKLGFEKWWLWRYF*
Ga0066903_1049613203	3300005764	Tropical Forest Soil	AIRTIYPTSWPPFGVTEPRAWGPSRLIYWAKVGFEKWWLWRYF*
Ga0074473_111838041	3300005830	Sediment (Intertidal)	PTGWPPFGATEPRTWGPSRSMYWAKIAFEKWWLWRFF*
Ga0066651_103424713	3300006031	Soil	AMNRTIYPRGWPPFAPTDARTWGPSPFIYWAKILFEKWWLWRYF*
Ga0075421_1000353436	3300006845	Populus Rhizosphere	LAFGAGRAAANRTIYPSGWPPFGATEARTWGPSKLIYWAKLGFEKWWLWRYF*
Ga0075431_1001398781	3300006847	Populus Rhizosphere	AFGAGRAAANRTIYPSGWPPFGATEARTWGPSKLIYWAKLGFEKWWLWRYF*
Ga0075433_102653611	3300006852	Populus Rhizosphere	YPTGWPPFGATEPRTWGPSRMIYWAKVGFEKWWLWRYF*
Ga0075425_1005597274	3300006854	Populus Rhizosphere	MNRTIYPSGWPPFAATEARTWGPSPFIYWAKVGFEKWWLWRYF*
Ga0073934_1000065618	3300006865	Hot Spring Sediment	LAFGAGRAAANRTTYPTGWPPFGVTDPRTIGPSKLIYWAKIGFEKWWLWRYF*
Ga0105107_110262772	3300009087	Freshwater Sediment	YGAGRAAANRTTYPTGWPPFGITDPRTWGPNKAIYWAKIGFEKWWLWRYF*
Ga0105092_104939821	3300009157	Freshwater Sediment	TVYPTGWPPLGVTEPRTWGPSRLIYWAKIGFEKWWLWRYF*
Ga0105092_107321282	3300009157	Freshwater Sediment	ADRAAAIRTIDPAGWPPFGITEPLTGGPSRLIYWAKIGFEKWWLWRYF*
Ga0075423_101733591	3300009162	Populus Rhizosphere	GRAAMNRTIYPSGWPPFAATEARTWGPSPFIYWAKVGFEKWWLWRYF*
Ga0075423_103136983	3300009162	Populus Rhizosphere	LLAFGAGRAAANRTVYPTGWPPFGVTDSRTWGPSRLIYWAKIGFEKWWLWRYF*
Ga0075423_106059042	3300009162	Populus Rhizosphere	MLAFGAGRAAANRTVYPTGWPPFGVTEPRTWGPSRLIYWAKVGFEKWWLWRYF*
Ga0114945_100749173	3300009444	Thermal Springs	LLAYGAGRAAANRTVYPRGWPPFGTGEARSWGPSRLIYWAKIGFEKWWLWRYF*
Ga0129284_102091331	3300009514	Beach Aquifer Porewater	GAGRAAANRTTYPTGWPPFGVTEARTWGPSRLIYWAKLGFEKWWLWRYF*
Ga0105347_13093472	3300009609	Soil	LAFGAGRAAANRTTYPTGWPPFGVTDPKTLGPSKVIYWAKIGFEKWWLWRYF*
Ga0114999_108371122	3300009786	Marine	THGAGRASANRTTYPAGWPPFGKPESRAWGPSQLIYGAKIGFEKWWLWRYF*
Ga0134086_101731701	3300010323	Grasslands Soil	RTVYPTGWPPFGVTEPKTWGPSRLIYWAKIGFEKWWLWRYF*
Ga0126376_122064682	3300010359	Tropical Forest Soil	RAAANRTIYPTGWPPFGATEPRTWGPSRLIYWAKVGFEKWWLWRYF*
Ga0126372_109502672	3300010360	Tropical Forest Soil	MNRTIYPQGWPPFAPTDARTWGPSPFIYWAKVLFEKWWLWRYF*
Ga0126378_112001311	3300010361	Tropical Forest Soil	WPPFGVTEPQAWGPSRFIYWAKIGFEKWWLWRYF*
Ga0126378_123181492	3300010361	Tropical Forest Soil	FGAGRAAANRTTYPTGWPPFGATEPRTWGPSRLIYWAKIGFEKWWLWRYF*
Ga0126377_106350763	3300010362	Tropical Forest Soil	TIYPTGWPPFGATEPRTWGPSRLIYWAKIGFEKWWLWRYF*
Ga0126379_119915141	3300010366	Tropical Forest Soil	AAIRTIYPTSWPPFGVTEPRAWGPSRFIYWAKIGFEKWWLWRYF*
Ga0126381_1023860183	3300010376	Tropical Forest Soil	AAAIRTIYPTSWPPFGVTEPRAWGPSRFIYWAKIGFEKWWLWRYF*
Ga0126381_1041111342	3300010376	Tropical Forest Soil	GRAAAIRTIYPTSWPPFGVTEPRAWGPSRLIYWAKVGFEKWWLWRYF*
Ga0134124_129450481	3300010397	Terrestrial Soil	AANRTTYPTGWPPYGVTDPRTWGPSRMIYWAKIGFEKWWLWRYF*
Ga0126383_101047701	3300010398	Tropical Forest Soil	LAYGAGRAAAIRTIYPTSWPPFGVTEPRAWGPSRLIYWAKVGFEKWWLWRYF*
Ga0134121_111353951	3300010401	Terrestrial Soil	GAGRAAMNRTIYPQGWPNFAPSYARTWGPSPFIYWAKVLFEKWWLWRYF*
Ga0137334_10403212	3300012179	Soil	ANRTVYPTGWPSFGVADPRTWGPSRLIYWAKIAFEKWWLWRYF*
Ga0137334_10607921	3300012179	Soil	GWPPFGVTEPRTWGPSRVIYWAKIGFEKWWLWRYF*
Ga0137371_108408221	3300012356	Vadose Zone Soil	AAANRTVYPTGWPPFGVTEPKTWGPSRLIYWAKIGFEKWWLWRYF*
Ga0137360_105689181	3300012361	Vadose Zone Soil	RAAANRTTYPTGWPPFGATEPRTWGPSRMIYWAKIGFEKWWLWRYF*
Ga0126369_132256482	3300012971	Tropical Forest Soil	AFGAGRAAANRNTYPTGWPPFGATEPRTWGPSRLIYWAKIGFEKWWLWRYF*
Ga0157374_122452791	3300013296	Miscanthus Rhizosphere	GRAAANRTTYPTGWPPFGATEPRTWGPSRMIYWAKIGFEKWWLWRYF*
Ga0163162_130657762	3300013306	Switchgrass Rhizosphere	AGRAAANRTTYPTGWPPYGVTDPRTWGPSRMIYWAKIGFEKWWLWRYF*
Ga0157377_100933281	3300014745	Miscanthus Rhizosphere	AAANRTIYPTGWPPFGVTDPRTWGPNRAIYWAKIGFEKWWLWRYF*
Ga0132256_1016206051	3300015372	Arabidopsis Rhizosphere	ANRTTYPTGWPPFGVTEPRTWGPSRMIYWAKVGFEKWWLWRYF*
Ga0132256_1024270281	3300015372	Arabidopsis Rhizosphere	PTGWPPFGAIEPRSWGPSRMIYWAKVGFEKWWLWRYF*
Ga0132256_1034709342	3300015372	Arabidopsis Rhizosphere	RTTYPTGWPPFGVTEPRTWGPSRMIYWAKVGFEKWWLWRYF*
Ga0132257_1009786161	3300015373	Arabidopsis Rhizosphere	LAFGAGRAAANRTTYPTGWPPFGATEPRTWGPSRMIYWAKVGFEKWWLWRYF*
Ga0184634_104894421	3300018031	Groundwater Sediment	LLAYGAGRAAANRTVYPGGWPPFGAGEARSWGPNRLIYWAKIGFEKWWLWRYF
Ga0184634_105104382	3300018031	Groundwater Sediment	GRAAANRTVYPRGWPPFGAGEARSWDPNRLIYWAKIGFEKWWLWRYF
Ga0184637_102551422	3300018063	Groundwater Sediment	LAFGAGRAAANRTTYPNGWPPFGSGSSRSWGPSPLIYLAKVAFEKWWLWRYF
Ga0184611_10739151	3300018067	Groundwater Sediment	RTTYPTGWPPFGATEPRTWGPSRMIYWAKVGFEKWWLWRYF
Ga0184632_103000522	3300018075	Groundwater Sediment	AGRAAANRTTYPTGWPPFGVTDPRTWGPSRLIYWAKVGFEKWWLWRYF
Ga0184633_101875741	3300018077	Groundwater Sediment	TYPTGWPPFGVTEARTWGPSRLIYWAKAGFEKWWLWRYF
Ga0184627_105037842	3300018079	Groundwater Sediment	RAAANRTTYPTGWPPFGVTEARTWGPSRLIYLAKISFEKWWLWRYF
Ga0184639_105389892	3300018082	Groundwater Sediment	GAGRAAVNRTTYPTGWPPFGVTDPRTWGPSRLIYWAKVGFEKWWLWRYF
Ga0190271_108795202	3300018481	Soil	FGAGRAAANRTTYPTGWPPFGVTDPRTWGPSRAIYWAKVGFEKWWLWRYF
Ga0193733_11045302	3300020022	Soil	TTYPTGWPPFGATEPRTWGPSRMIYWAKIGFEKWWLWRYF
Ga0209109_101204911	3300025160	Soil	RTIYPRGWPPFGATEARTWGPSKAIYWAKVAFEKWWLWRYF
Ga0209642_101582861	3300025167	Soil	YPTGWPPFGVTEPRTWGPSRLIYWAKIGFEKWWLWRYF
Ga0209172_1000095325	3300025310	Hot Spring Sediment	LAFGAGRAAANRTTYPTGWPPFGVTDPRTIGPSKLIYWAKIGFEKWWLWRYF
Ga0209343_101273914	3300025311	Groundwater	ANRTIYPTGWPPFGVTEARTWGPSRLIYWAKIGFEKWWLWRYF
Ga0209641_111203751	3300025322	Soil	PRSWPPFGETEPRTWGPSRMLYWAKIAFEKWWLWRYF
Ga0209342_100984491	3300025326	Soil	TVYPTGWPPFGVTEPRTWGPSRLIYWAKIGFEKWWLWRYF
Ga0207680_109153331	3300025903	Switchgrass Rhizosphere	GWPPFGVTEPRTWGPSRMIYWAKIGFEKWWLWRYF
Ga0207684_113690791	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	GWPPFGATEPRTWGPSRMIYWAKIGFEKWWLWRYF
Ga0207649_115795502	3300025920	Corn Rhizosphere	AFGAGRAAANRTTYPTGWPPFGVTEPRTWGPSRMIYWAKIGFEKWWLWRYF
Ga0207690_103467381	3300025932	Corn Rhizosphere	NRTTYPTGWPPFGVTEPRTWGPSRMIYWAKIGFEKWWLWRYF
Ga0209237_12569721	3300026297	Grasslands Soil	GAGRAAANRTVYPTGWPPFGVTEPRTWGPSRLIYWAKIGFEKWWLWRYF
Ga0209377_10018911	3300026334	Soil	PTGWPPFGVTEPRTWGPSRLIYWAKIGFEKWWLWRYF
Ga0209971_10208531	3300027682	Arabidopsis Thaliana Rhizosphere	SFGAGRAAANRTIYPTGWPPFGVTEARTWGPSKLIYWSKIGFEKWWLWRYF
Ga0209797_101486581	3300027831	Wetland Sediment	YPTSWPPFGVTDPRTWGPNKAIYWAKIGFEKWWLWRYF
Ga0209382_100535864	3300027909	Populus Rhizosphere	LAFGAGRAAANRTIYPSGWPPFGATEARTWGPSKLIYWAKLGFEKWWLWRYF
Ga0209382_110622011	3300027909	Populus Rhizosphere	LLAFGAGRAAANRTTYPTGWPPFGVTEPRTLGPSRLIYWAKVGFEKWWLWRYF
Ga0209754_10064208	3300027951	Host-Associated	NRTTYPQGWPPFGATDSRSWGPSRTIYWSKVLFEKWWLWRYF
Ga0299906_110818831	3300030606	Soil	LLAFGAGRAAANRTIYPAGWPPFGATEARTWGPSKLIYWAKIGFEKWWLWRYF
(restricted) Ga0255310_100626651	3300031197	Sandy Soil	TGWPPFGVTDPRTLGPSKLIYWAKLGFEKWWLWRYF
Ga0326597_106130291	3300031965	Soil	LLAFGAGRAAANRTIYPAGWPPFGAAESRAWGPSSLIYLAKIGFEKWWLWRFF
Ga0310897_106446801	3300032003	Soil	YPTGWPPYGVTDPRTWGPSRMIYWAKIGFEKWWLWRYF
Ga0315281_121351842	3300032163	Sediment	SFGAGRAAANRTTYPNGWPPFGSGSSRSWGPSPLIYLAKIGFEKWWLWRYF
Ga0306920_1001803722	3300032261	Soil	MTYPTGWPPFGITEPRTWGPSRMIYWAKIGFEKWWLWRYF
Ga0310345_106073712	3300032278	Seawater	VAYGAGRAAANRTIYPTGWPPYGAGTSKVWGPSRLVYGAKIAFEKWWLWRYF
Ga0310810_101858863	3300033412	Soil	MNRTIYPQGWPPFAATDARTWGPSPFIYWAKLLFEKWWLWRYF
Ga0316619_113657701	3300033414	Soil	TYPTSWPPFGITDPRTWGPNRAIYWAKIGFEKWWLWRYF
Ga0373959_0095324_589_702	3300034820	Rhizosphere Soil	MNRTIYPQGWPPFAATEARTWGPSPFIYWAKVGFEKWW

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.36
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.36
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters