Metagenome / Metatranscriptome Family F054098

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F054098
Family Type	Metagenome / Metatranscriptome
Number of Sequences	140
Average Sequence Length	43 residues
Representative Sequence	LIDVIVKEVEAANQSNSQGAADADVQAEEGQAKEGAWELFTG
Number of Associated Samples	70
Number of Associated Scaffolds	140

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	12.41 %
% of genes near scaffold ends (potentially truncated)	60.00 %
% of genes from short scaffolds (< 2000 bps)	84.29 %
Associated GOLD sequencing projects	64
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.31

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model
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Most Common Taxonomy
Group	Bacteria (68.571 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine (52.857 % of family members)
Environment Ontology (ENVO)	Unclassified (92.857 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (60.000 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68. 1GBIDBA_100516711 2shallow_10420371 3Ga0066858_100535751 4Ga0066860_101618102 5Ga0066828_100836613 6Ga0066828_102728872 7Ga0066838_100523262 8Ga0066380_102007462 9Ga0068471_11385681 10Ga0068471_12650171 11Ga0068471_14952946 12Ga0068476_14603842 13Ga0068501_11539811 14Ga0068480_12741071 15Ga0068502_10173051 16Ga0068502_11990781 17Ga0068502_12959791 18Ga0068481_12063471 19Ga0068481_13210322 20Ga0068503_100647081 21Ga0066376_100580243 22Ga0066376_101375891 23Ga0066376_101660171 24Ga0066372_101514821 25Ga0066372_105924423 26Ga0099959_12096921 27Ga0066367_11626262 28Ga0103688_10205172 29Ga0117902_10453304 30Ga0117902_16269921 31Ga0114996_100450279 32Ga0114996_101634964 33Ga0114996_102171063 34Ga0114996_103214893 35Ga0114996_103391552 36Ga0114996_104773383 37Ga0114996_109242452 38Ga0114996_110172392 39Ga0118722_11578683 40Ga0114993_100940381 41Ga0114993_103233402 42Ga0114993_108905031 43Ga0115002_102842364 44Ga0115002_105514061 45Ga0115002_106396132 46Ga0115002_111265162 47Ga0114999_102470121 48Ga0114999_103044512 49Ga0114999_107539802 50Ga0114999_111884903 51Ga0114999_112485091 52Ga0133547_114606182 53Ga0211566_10447383 54Ga0211637_103800262 55Ga0211637_104102881 56Ga0211623_102107342 57Ga0211575_101790061 58Ga0211544_103854701 59Ga0211578_101537831 60Ga0211578_102590162 61Ga0211697_102247291 62Ga0206683_105783622 63Ga0206679_106563972 64Ga0206681_102606481 65Ga0187833_101303823 66Ga0208274_11309821 67Ga0207991_10978702 68Ga0208411_10420225 69Ga0209752_12033702 70Ga0209034_101317681 71Ga0209035_101066961 72Ga0209035_102696442 73Ga0209089_100814852 74Ga0209089_100873692 75Ga0209089_104125681 76Ga0209403_100500615 77Ga0209403_101446851 78Ga0209403_103866051 79Ga0209501_100985364 80Ga0209501_101399162 81Ga0209501_101893271 82Ga0209501_104031991 83Ga0209501_104184043 84Ga0209501_105957892 85Ga0209402_101840441 86Ga0209402_102201234 87Ga0209402_104191241 88Ga0209402_105557161 89Ga0209402_108068931 90Ga0302132_103936562 91Ga0302119_101161532 92Ga0302119_102963533 93Ga0302123_100422175 94Ga0302123_100909402 95Ga0302123_101244423 96Ga0302123_102717882 97Ga0302123_105051052 98Ga0302135_100542401 99Ga0302135_101650642 100Ga0302118_100395724 101Ga0302117_101775031 102Ga0302133_100310073 103Ga0302133_102877033 104Ga0302139_100958975 105Ga0302120_101529111 106Ga0315328_100140411 107Ga0315328_107014672 108Ga0310123_106767382 109Ga0310120_104717592 110Ga0310124_101763044 111Ga0310125_1000700713 112Ga0310125_105531171 113Ga0315319_101263413 114Ga0315327_100691602 115Ga0315327_104087902 116Ga0315329_100571152 117Ga0315329_101171614 118Ga0315329_102073623 119Ga0315305_10869581 120Ga0315339_10248354 121Ga0315339_10272813 122Ga0310345_108844831 123Ga0310345_111520123 124Ga0310345_116936632 125Ga0310345_117397481 126Ga0310345_118738061 127Ga0310345_121120313 128Ga0310345_123634791 129Ga0315334_100207283 130Ga0315334_101978224 131Ga0315334_107409951 132Ga0310342_1000230931 133Ga0310342_1001658151 134Ga0310342_1002597363 135Ga0310342_1003067261 136Ga0310342_1003129311 137Ga0310342_1015155941 138Ga0310342_1036006531 139Ga0372840_112444_328_456 140Ga0372840_232415_3_119
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68. 1GBIDBA_100516711 2shallow_10420371 3Ga0066858_100535751 4Ga0066838_100523262 5Ga0066380_102007462 6Ga0068471_11385681 7Ga0068471_12650171 8Ga0068501_11539811 9Ga0068480_12741071 10Ga0068502_10173051 11Ga0068502_12959791 12Ga0068481_12063471 13Ga0068481_13210322 14Ga0066376_101660171 15Ga0114996_102171063 16Ga0114993_103233402 17Ga0115002_105514061 18Ga0114999_111884903 19Ga0211544_103854701 20Ga0209752_12033702 21Ga0209089_100873692 22Ga0209501_100985364 23Ga0209501_104184043 24Ga0209402_102201234 25Ga0315305_10869581 26Ga0310345_108844831 27Ga0310345_118738061 28Ga0310342_1002597363 29Ga0310342_1003067261 30Ga0310342_1036006531
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42 1Ga0315334_100207283 2GBIDBA_100516711 3shallow_10420371 4Ga0066858_100535751 5Ga0066380_102007462 6Ga0068471_11385681 7Ga0068471_12650171 8Ga0068476_14603842 9Ga0068501_11539811 10Ga0068480_12741071 11Ga0068502_10173051 12Ga0068502_12959791 13Ga0068481_12063471 14Ga0068481_13210322 15Ga0066376_100580243 16Ga0066372_101514821 17Ga0117902_10453304 18Ga0117902_16269921 19Ga0114996_103391552 20Ga0114996_110172392 21Ga0133547_114606182 22Ga0211544_103854701 23Ga0211578_101537831 24Ga0211578_102590162 25Ga0211697_102247291 26Ga0206679_106563972 27Ga0206681_102606481 28Ga0207991_10978702 29Ga0209752_12033702 30Ga0209089_100814852 31Ga0209089_100873692 32Ga0209403_100500615 33Ga0209501_100985364 34Ga0209501_104184043 35Ga0209402_101840441 36Ga0302135_101650642 37Ga0315328_100140411 38Ga0315319_101263413 39Ga0315305_10869581 40Ga0310345_108844831 41Ga0310345_118738061 42Ga0310342_1001658151 43Ga0310342_1003067261 44Ga0310342_1015155941 45Ga0310342_1036006531 46Ga0372840_112444_328_456 47Ga0372840_232415_3_119
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 57.14% β-sheet: 0.00% Coil/Unstructured: 42.86%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.31
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.31
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 140 Family Scaffolds
PF14497	GST_C_3	5.71
PF02668	TauD	4.29
PF07040	DUF1326	4.29
PF08291	Peptidase_M15_3	3.57
PF13847	Methyltransf_31	2.14
PF01243	Putative_PNPOx	2.14
PF00378	ECH_1	2.14
PF04828	GFA	2.14
PF13417	GST_N_3	2.14
PF00701	DHDPS	1.43

Showing 1 to 10 of 46 entries

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COG ID	Name	Functional Category	% Frequency in 140 Family Scaffolds
COG5588	Uncharacterized conserved protein, DUF1326 domain	Function unknown [S]	4.29
COG2175	Taurine dioxygenase, alpha-ketoglutarate-dependent	Secondary metabolites biosynthesis, transport and catabolism [Q]	4.29
COG0329	4-hydroxy-tetrahydrodipicolinate synthase/N-acetylneuraminate lyase	Cell wall/membrane/envelope biogenesis [M]	2.86
COG3791	Uncharacterized conserved protein	Function unknown [S]	2.14
COG0251	Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family	Defense mechanisms [V]	1.43
COG4638	Phenylpropionate dioxygenase or related ring-hydroxylating dioxygenase, large terminal subunit	Inorganic ion transport and metabolism [P]	1.43
COG0405	Gamma-glutamyltranspeptidase	Amino acid transport and metabolism [E]	1.43
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	1.43
COG1167	DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain	Transcription [K]	1.43
COG0730	Sulfite exporter TauE/SafE/YfcA and related permeases, UPF0721 family	Inorganic ion transport and metabolism [P]	1.43

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	68.57 %
Unclassified	root	N/A	31.43 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	68.57 %
Unclassified	root	N/A	31.43 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	68.57 %
Unclassified	root	N/A	31.43 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.71 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	60.00 %
Unclassified	root	N/A	31.43 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	43.57 %
Unclassified	root	N/A	31.43 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.71 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.71 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.14 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	3.57 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	21.43 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	0.71 %
Unclassified	root	N/A	31.43 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.71 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.71 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	1.43 %
Rhodobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	3.57 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	19.29 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	0.71 %
Unclassified	root	N/A	31.43 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.71 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.71 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	1.43 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	0.71 %
Unclassified	root	N/A	31.43 %
unclassified Rhodobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → unclassified Rhodobacteraceae	3.57 %
unclassified Rhodospirillaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae	18.57 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.71 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	1.43 %
Rhodobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → unclassified Rhodobacteraceae → Rhodobacteraceae bacterium	3.57 %
Rhodospirillaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	18.57 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	0.71 %
Unclassified	root	N/A	31.43 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.71 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.71 %
Bradyrhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	0.71 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	1.43 %
Rhodobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → unclassified Rhodobacteraceae → Rhodobacteraceae bacterium	3.57 %
Rhodospirillaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	18.57 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	0.71 %
Unclassified	root	N/A	31.43 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001683\|GBIDBA_10051671	Not Available	1535	Open in IMG/M
3300001840\|shallow_1042037	Not Available	1444	Open in IMG/M
3300005398\|Ga0066858_10053575	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	1189	Open in IMG/M
3300005399\|Ga0066860_10161810	All Organisms → cellular organisms → Bacteria	773	Open in IMG/M
3300005423\|Ga0066828_10083661	Not Available	1118	Open in IMG/M
3300005423\|Ga0066828_10272887	Not Available	547	Open in IMG/M
3300005592\|Ga0066838_10052326	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	1164	Open in IMG/M
3300005948\|Ga0066380_10200746	Not Available	605	Open in IMG/M
3300006310\|Ga0068471_1138568	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	697	Open in IMG/M
3300006310\|Ga0068471_1265017	All Organisms → cellular organisms → Bacteria	1233	Open in IMG/M

Showing 1 to 10 of 137 entries

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	100.00%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	2.14%
Hydrothermal Vents	Environmental → Aquatic → Marine → Hydrothermal Vents	2.14%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	10.00%
Oceanic	Environmental → Aquatic → Marine → Oceanic	79.29%
Unclassified	Environmental → Aquatic → Marine → Unclassified	6.43%

Habitat	Taxonomy	Distribution
Aphotic Zone	Environmental → Aquatic → Marine → Oceanic → Aphotic Zone	6.43%
Photic Zone	Environmental → Aquatic → Marine → Oceanic → Photic Zone	2.86%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	70.00%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	10.00%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	6.43%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	2.14%
Unclassified	Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified	2.14%

Habitat	Taxonomy	Distribution
Hydrothermal Vent In Guaymas Basin In The Gulf Of California	Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent In Guaymas Basin In The Gulf Of California	0.71%
Hydrothermal Vent Plume	Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume	1.43%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	52.86%
Marine	Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine	6.43%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	6.43%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	3.57%
Marine	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine	2.86%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	2.14%
Seawater	Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater	12.14%
Seawater	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater	10.00%
Seawater	Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater	1.43%

Visualization
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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001683	Hydrothermal vent plume microbial communities from Guaymas Basin, Gulf of California - IDBA assembly	Environmental	Open in IMG/M
3300001840	Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Shallow Sites - gte1kb - lt4kb	Environmental	Open in IMG/M
3300005398	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV201	Environmental	Open in IMG/M
3300005399	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F14-07SV275	Environmental	Open in IMG/M
3300005423	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306SV47	Environmental	Open in IMG/M
3300005592	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV89	Environmental	Open in IMG/M
3300005948	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_O2min_ad_571m_LV	Environmental	Open in IMG/M
3300006310	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_3_0500m	Environmental	Open in IMG/M
3300006324	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_1_0500m	Environmental	Open in IMG/M
3300006325	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_1_0500m	Environmental	Open in IMG/M

Showing 1 to 10 of 70 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GBIDBA_100516711	3300001683	Hydrothermal Vent Plume	VAELIDVIVKDVEASNQSDSQGATDANVQAEKDQAKEGAWGLFTG*
shallow_10420371	3300001840	Hydrothermal Vent Plume	FCASSMLRHVNGIVKEVETANQSNSQGAADADVQAEESQAKERAWE*
Ga0066858_100535751	3300005398	Marine	DGSPASPVGELIDVIVKEVEAADQSNSKGATDADVPAEEGQAKEGARELFTG*
Ga0066860_101618102	3300005399	Marine	ELIDVIVKEVETANQSNSQGATDADVQAEKDQAKEGAWELFTG*
Ga0066828_100836613	3300005423	Marine	LIDVIVKEVEAADQSNSQGAADADVPAEEGQAKEGAWELFTG*
Ga0066828_102728872	3300005423	Marine	GELIDVIVKEVEAANQSNSQSAADANVQAEEGQAKEGAWELFTG*
Ga0066838_100523262	3300005592	Marine	VDEAADQSNSQGATDADVQAEEGQAKEGAWELFTG*
Ga0066380_102007462	3300005948	Marine	KEVEAVTSDQPHSEGAGDADVQAEAGQPKEGAWELFTD*
Ga0068471_11385681	3300006310	Marine	VGELIDGIVKEVETTNQSNSQGAAETDVPAEEGQAKERAWELFTG*
Ga0068471_12650171	3300006310	Marine	MLRNVNSIVKKVETANQSSSQGTADTDVQAEEGQAKEGTWELFT
Ga0068471_14952946	3300006310	Marine	PVGELIDVIVKKVEASNQPNSQGAADTDVQAEEGQAKEGAWELFTG*
Ga0068476_14603842	3300006324	Marine	VGELVDVIVKEVEASHQPNSQGAADADVPAEEGQAKERAWELFES*
Ga0068501_11539811	3300006325	Marine	KSMNGQHDVAVIVKEVEASNQPNSQGAADTDVQAEEGQAKEGAWELFTG*
Ga0068480_12741071	3300006335	Marine	MHGHAIIKQAATSDQPNSQGATDADVPEEEGRAKERAWELFTS*
Ga0068502_10173051	3300006336	Marine	VEAANQSNSQGAADADVPAEEGPSEKRARELFTG*
Ga0068502_11990781	3300006336	Marine	LIDVIVKEVETANQSNSQGSADADVQAEEGQAKEGAWELFTG*
Ga0068502_12959791	3300006336	Marine	DIIVKEVETANQSISQGAADTEVQVEEGQAKERAWELFTG*
Ga0068481_12063471	3300006339	Marine	VGKLVDAIVKKIEAATSDQPDSEGATDADVPAKGGQAKERAWE*
Ga0068481_13210322	3300006339	Marine	MFRKGRASPEGELINAIVKEAATSDQPNSEGAADADVPAEEDQAKERTWELFTG*
Ga0068503_100647081	3300006340	Marine	MFRKGRASPEGELINVIVKEAATSDQPNSEGAADADVPAEEDQAKERAWELFTG*
Ga0066376_100580243	3300006900	Marine	VGELIDVIVKEVETAHQSNSQGAADTDVQAEADQAKEGAWELFTG*
Ga0066376_101375891	3300006900	Marine	IDVIVKEVETAKQSNSQGATDADVQAEEDQAKEGAWELFTG*
Ga0066376_101660171	3300006900	Marine	LIDVIVKEVETAHQSNSQGAADADVEAEEDQAKEGAWELFEG*
Ga0066372_101514821	3300006902	Marine	LIDVIVKEVEASNHSNSEGAADADVPAEEDQVKEGAWELFTEIN*
Ga0066372_105924423	3300006902	Marine	GELIDVIVKEVEAANQSNSQGATDSGVQAEEGQAKERAWELFTG*
Ga0099959_12096921	3300007160	Marine	WQHYVIDVIVKEVEAAHQSNSKGAADADVQEEEGQAKEGAWELFTG*
Ga0066367_11626262	3300007291	Marine	LIDVIVKEVETANQSNSQGAADAEVQAEEGEAKEGAWELFTG*
Ga0103688_10205172	3300008788	Hydrothermal Vent In Guaymas Basin In The Gulf Of California	ELIDVIVKEVEAANQSNSQGAADTDVQAEEDQAKEGAWELFTG*
Ga0117902_10453304	3300009104	Marine	VGELIDVIVKEVEAANQSNSQGFAVADIPAEESQAKERAWELFTG*
Ga0117902_16269921	3300009104	Marine	MLRHVNGIVKEVETANQSNSQGAADTDVQAEKGQAKEGAWELFTG*
Ga0114996_100450279	3300009173	Marine	VGELIYVIVKEVEAANQSNRQGAADAGLPAEEGQAKEGAWELFKG*
Ga0114996_101634964	3300009173	Marine	LIDVIVKEVEAAHQSNSQGAADADVQAEKDQAKERAWELFTG*
Ga0114996_102171063	3300009173	Marine	LIDVIVKEVEATNHPDSQGATDADNQAEKDQAKEGASELFTD*
Ga0114996_103214893	3300009173	Marine	EVEAAHQSNSEGAADADVQAEKDQAKEGAWELFTG*
Ga0114996_103391552	3300009173	Marine	VGELIDVIVKEVEASLQPDSQGTADAEVPVEEGQAKEGAWGLFTG*
Ga0114996_104773383	3300009173	Marine	VIVKEVEATNQPDSQGAADADVQAEKDQAKEGAWELFPG*
Ga0114996_109242452	3300009173	Marine	LIDVIVKEVEAAHQSNSQGATDADVQAEEGQAKEGAWELFTG*
Ga0114996_110172392	3300009173	Marine	LIDVIVKAVEATNQPDSQGAADADVQAEKDQAKEGAWELFTG*
Ga0118722_11578683	3300009376	Marine	VGKLIDVIVKEVEAANQSNNQGSAVADVPAEESQAKERAWELFTG*
Ga0114993_100940381	3300009409	Marine	VGELIDVIVKEVEAANQSNRQGAADAGLPAEEGQAKEGAWELFKG*
Ga0114993_103233402	3300009409	Marine	VGELIDVIVKEVEASLQPDSQGTADAEAPVEEGQAKEGAWGLFTG*
Ga0114993_108905031	3300009409	Marine	ELIDVIVKEVEAAHQSNSQGAADADVQAEKDQAKEGAWELFTG*
Ga0115002_102842364	3300009706	Marine	IVKEVEAAHQSNSEGAADADVQAEKDQAKEGAWELFTG*
Ga0115002_105514061	3300009706	Marine	IVKEVEAANKSNSQGAANADVQAEKDQAKEGAWELFTG*
Ga0115002_106396132	3300009706	Marine	EDGSPASPVGELIDVIVKEVEAAHQSNSQGAADADVQAEKNQAKEGAWELFTG*
Ga0115002_111265162	3300009706	Marine	LIDVIVKEVEATNQPDSQGAADADVQAEKDQAKEGAWELFTG*
Ga0114999_102470121	3300009786	Marine	DVIVKEVEAAHQSNSQGAADADVQAEKDQAKEGAWELFTG*
Ga0114999_103044512	3300009786	Marine	VGELIDVIVKEVEASNQSNSQGAADADVQAEKDQAKEGAWELFTG*
Ga0114999_107539802	3300009786	Marine	LIDVIVKEVEAAHQSNSQGATDAGLPAEEGQAKEGAWELFKG*
Ga0114999_111884903	3300009786	Marine	TAHRLAPWGGVIDVIVKEVEAANKSNSQGAANADVQAEKDQAKEGAWELFTG*
Ga0114999_112485091	3300009786	Marine	KEVEAAHQSNSEGAADADVQAEKDQAKEGAWELFTG*
Ga0133547_114606182	3300010883	Marine	DVIVKEVEAAHQSNSEGAADADVQAEKNQAKEGAWELFTG*
Ga0211566_10447383	3300020272	Marine	GELIDVIVKEVEAADQSNSKGATDADVPAEEGQAKEGARELFTG
Ga0211637_103800262	3300020398	Marine	AIVKEVETANQSNSQGAADTDVPAEEGQAKEGAWELFTG
Ga0211637_104102881	3300020398	Marine	VVKEVKAATSDQPHSEGARDTDVQAEEGQAKAGAWELFTG
Ga0211623_102107342	3300020399	Marine	EDGSPASPVGELIDVIVKEVEAAHQSNSQGATDADVQAEEDQAKEGAWELFTG
Ga0211575_101790061	3300020407	Marine	SKEVEAANQSNSQGAADADVQAEEGQAKEGAWELFTG
Ga0211544_103854701	3300020443	Marine	NEPRHGHAIVKEVEASHQPNSQGAADTNVPAEEGQAKERAWELFTG
Ga0211578_101537831	3300020444	Marine	GKLIDVIVKEVETSNQPNSQGSADADVQAEEGPAKKRAWELFTG
Ga0211578_102590162	3300020444	Marine	VGELIDVIVKEVETANQPNSQGAADIDVPAEEGQAKEGARELFTCLKMV
Ga0211697_102247291	3300020458	Marine	DVIVKEVETANRSNSQDAADTDVQAEEGQAKEGAWELFEG
Ga0206683_105783622	3300021087	Seawater	SPVGELIDVIVKEVEAANQSNSQGTADADVQAEEDQAKEGAWELFTG
Ga0206679_106563972	3300021089	Seawater	LIDVIVKEVEASNQSNSQGAPDVDVQAEEDQAKEEAWELFTG
Ga0206681_102606481	3300021443	Seawater	VGELIDVIVKEVETANQSNSQGATDADAPAEEGQAKEGAWELF
Ga0187833_101303823	3300022225	Seawater	LIDVIVKEVEAADQSNSQGAADADVPAEEGQAKEGAWELFTG
Ga0208274_11309821	3300026188	Marine	IDVIVKEVEAADQSNSEGATDADVPAEEGQAKEGAWELFTG
Ga0207991_10978702	3300026264	Marine	KEVETANQSNSQGATDADVQAEEDPAKEGAWELFTG
Ga0208411_10420225	3300026279	Marine	VGELIDVIVKEVEAADQSNSKGATDADVPAEEGQAKEGARELFTG
Ga0209752_12033702	3300027699	Marine	GIVKEVEASHQPNSQGATDADVPAEEGQAKEGAWELFTG
Ga0209034_101317681	3300027755	Marine	PVGELIDVIVKEAETANQSNSQGAADADVQAEEGQAKEGAWELFTG
Ga0209035_101066961	3300027827	Marine	VGELIDVIVKEVEASNQSNSQGAADADVQAEKYQAKEGAWELFTG
Ga0209035_102696442	3300027827	Marine	PVGELIDVIVKEVEAAHQSNSQGATDADVQAEKDQAKEGAWELFTG
Ga0209089_100814852	3300027838	Marine	LIDVIVKEVEATNHPDSQGATDADNQAEKDQAKEGASELFTD
Ga0209089_100873692	3300027838	Marine	MVCRLIYVIVKEVEAANQSNRQGAADAGLPAEEGQAKEGAWELFKG
Ga0209089_104125681	3300027838	Marine	EVEAAHQSNSEGAADADVQAEKDQAKEGAWDLFSG
Ga0209403_100500615	3300027839	Marine	VIDVIVKEVEAANKSNSQGAANADVQAEKDQAKEGAWELFTG
Ga0209403_101446851	3300027839	Marine	LIYVIVKEVEAANQSNRQGAADAGLPAEEGQAKEGAWELFKG
Ga0209403_103866051	3300027839	Marine	MVCRLIYVIVKEVEAANQSNRQGAADAGLPAEEGQAK
Ga0209501_100985364	3300027844	Marine	PTTVCSGLPVKEVKTAHQSNSQGAADADVQAEKDQAKEGAWELFSG
Ga0209501_101399162	3300027844	Marine	VGELIYVIVKEVEAANQSNRQGAADAGLPAEEGQAKEGAWELFKG
Ga0209501_101893271	3300027844	Marine	MVCRLIYVIVKEVEAANQSNRQGAADAGLPAEEGQAKEGAWEL
Ga0209501_104031991	3300027844	Marine	EVEAAHQSNSEGAADADVQAEKDQAKEGAWELFTG
Ga0209501_104184043	3300027844	Marine	SPVGELIGVIVKEVEAAHQSNSEGAADADVQAEKDQAKEGAWDLFAG
Ga0209501_105957892	3300027844	Marine	LIYVIVKEVEAAHQSNSQGATDADVQAEEGQAKEGAWELFTG
Ga0209402_101840441	3300027847	Marine	DLIVKEVEASNQSNSQGAADADVQAEKDQAKEGAWELFTG
Ga0209402_102201234	3300027847	Marine	VGELIYVIVKEVEAANQSNRQGAADAGLPAEEGQAK
Ga0209402_104191241	3300027847	Marine	EVEAANQSNRQGAADAGLPAEEGQAKEGAWELFKG
Ga0209402_105557161	3300027847	Marine	IVKEVEAANKSNSQGAANADVQAEKDQAKEGAWELFTG
Ga0209402_108068931	3300027847	Marine	MGELIDVIVKEVEASNQSNSQGAADADVQAEKDQAKEAAWELFTG
Ga0302132_103936562	3300031605	Marine	KEVEASNQSNSQGAADADVQAEKDQAKEGAWELFTG
Ga0302119_101161532	3300031606	Marine	VGELIDVIVKEVEAAHQSNSEGAADADVQAEEDQAKEGAWELFTG
Ga0302119_102963533	3300031606	Marine	VGELIDVIVKEVEASNQSNSQGAPDADVRAEEDQAKEGAWELFTG
Ga0302123_100422175	3300031623	Marine	MVCRLIDVIVKEVEAANQSNRQGAADAGLPAEEGQAKEGAWELFKG
Ga0302123_100909402	3300031623	Marine	VGELIDVIVKEVEAAHQSNSQGAADADVQAEKDQAKEGAWELFTG
Ga0302123_101244423	3300031623	Marine	VGELIYVIVKEVEAANQSNRQDAADAGLPAEEGQAKEGAWELFKG
Ga0302123_102717882	3300031623	Marine	RLIDVIVKEVEAAHQSNSQGATDADVQAEEGQAKEGAWELFTG
Ga0302123_105051052	3300031623	Marine	EDGSPASPVGELIDVIVKEVEAAHQSNSEGAADADIQAEKDQAKEGAWELFTG
Ga0302135_100542401	3300031625	Marine	PVGELIDVIVKEVEAAHQSNSQGAADADVQAEKDQAKEGAWELFTG
Ga0302135_101650642	3300031625	Marine	VGELIEVIVKEVKTAHQSNSQGAADADVQAEKDQAKEGAWELFAG
Ga0302118_100395724	3300031627	Marine	MVCRLIDVIVKEVEAAHQSNSQGATDADVQAEEGQAKEGAWELFTG
Ga0302117_101775031	3300031639	Marine	MDVIVKEVEAANKSNSQGAANADVQAEKDQAKEGAWELFTG
Ga0302133_100310073	3300031646	Marine	MGELIDVIVKEVEASNQSNSQGAADADVQAEKDQAKEGAWELFTG
Ga0302133_102877033	3300031646	Marine	VKEVEAANKSNSQGAANADVQAEKDQAKEGAWELFTG
Ga0302139_100958975	3300031693	Marine	MVCRLIYVIVKEVEAANQSNRQGAADAGLPAEEGQAKE
Ga0302120_101529111	3300031701	Marine	PASPVGELIDVIVKEVEASNQSNSQGAPDADFQAEEDQAKEGAWELFTG
Ga0315328_100140411	3300031757	Seawater	LIDVIVREVEAAKQSNCQGAADAAIQAENDQAKEGAWELFTG
Ga0315328_107014672	3300031757	Seawater	SPASPVGELIDVIVKEVEAANQSNSQGAADADVQAEEDQAKEGAWELFTG
Ga0310123_106767382	3300031802	Marine	IDVIVKEVEASNQSNSQGAADADVQVEEDQAKEGAWELFTG
Ga0310120_104717592	3300031803	Marine	LIDVIVKEVETANQSNSQGTADADVQAEEDQAKEGAWELFTG
Ga0310124_101763044	3300031804	Marine	VGELIYVIVKEVEAANQSNRQGAADAGLPAEEGQAKEG
Ga0310125_1000700713	3300031811	Marine	LTSQPGGRLIDVIVKEVEATNHPDSQGATDADNQAEKDQAKEGASELFTD
Ga0310125_105531171	3300031811	Marine	RLEDGSPASPMGELIDVIVKEVEASNQSNSQGAADADVQAEKDQAKEAAWELFTG
Ga0315319_101263413	3300031861	Seawater	EVETANQSNSEGVADADVQAEEDQAKEGAWELFTG
Ga0315327_100691602	3300032032	Seawater	VGELIDVIVKEVETANQSNSQGATDADVQAEEDQAKEGAWELFTG
Ga0315327_104087902	3300032032	Seawater	REVEAANQSNSQGTADADVQAEEGQAKEGAWELFTG
Ga0315329_100571152	3300032048	Seawater	LIDVIVKEVEAANQSNSQGAPDADVQAEEDQAKEGAWELFTG
Ga0315329_101171614	3300032048	Seawater	GSKEVEAANQSNSQGAADADVQAEEGQAKEGAWELFTG
Ga0315329_102073623	3300032048	Seawater	EVEASNQSNSQGAADADVPAEEDQAKERAWELFTG
Ga0315305_10869581	3300032127	Marine	SPVGEFIDCIVKEVEASHQPDSQGTAHADVPVGEGQAKEGAWVLSTV
Ga0315339_10248354	3300032134	Seawater	VEELIDVIVKEVEASNQSNSQGAADADVQAEKDQAKEGAWELFTG
Ga0315339_10272813	3300032134	Seawater	GELIDVIVKEVEAAHQSNSQGSADADVQAEKDQAKEGAWELFTG
Ga0310345_108844831	3300032278	Seawater	ANRSGSMEVEASNQSNSQGVADADVSAEEGQAKGAAWELFTG
Ga0310345_111520123	3300032278	Seawater	VAELIDVIVKEVDAANQSNSQGAADAEVQAEEGEAKEGAWELFTG
Ga0310345_116936632	3300032278	Seawater	VAELIDVIVKEVETANQSNSQGAADADVQAEEGEAKEGAWELFTG
Ga0310345_117397481	3300032278	Seawater	SPVGELIDVIVKEVEAANQSNSQGATDADVPAEEGQAKEGAWELFAG
Ga0310345_118738061	3300032278	Seawater	SPLGEWIDAIVKKVEAATSNQPISRGAADADVQAEEGQAKEGAWELFTN
Ga0310345_121120313	3300032278	Seawater	DVAVIVKEVEAANQSNSQGAADADVQAEEGQAKEGAWELFTG
Ga0310345_123634791	3300032278	Seawater	PVGELIDVIVKEVEAANQSNSQGAADADVQAEEGPAKERAWELFTG
Ga0315334_100207283	3300032360	Seawater	LIDVIVKEVEAANQSNSQGAADADVQAEEGQAKEGAWELFTG
Ga0315334_101978224	3300032360	Seawater	VGELIDVIVKEVETANQSNSQGATDADVPAEEDQAKEGAWELFTG
Ga0315334_107409951	3300032360	Seawater	PVGELIDVIVKEVEAANQSNSQGAADADVQAEEDQAKEGAWELFTG
Ga0310342_1000230931	3300032820	Seawater	DVIVKEVEAANKSNSQGAADADVQAEEDQAKEGAWELFTG
Ga0310342_1001658151	3300032820	Seawater	ASPVGELIDVIVKEVEASNQSNSQGTADADIQAEADQAKEGARELFTG
Ga0310342_1002597363	3300032820	Seawater	SNQPNSQGATDAEVQAKEGQTKEGVWELFTGQPNFKC
Ga0310342_1003067261	3300032820	Seawater	VVVKEVKAATSDQPHSEGARDTDVQAEEDQAKKGAWELFTG
Ga0310342_1003129311	3300032820	Seawater	VGELIDVIVKEVEAANQSNSQGSTDADVPAEEGQAKEGAWELFTG
Ga0310342_1015155941	3300032820	Seawater	VGELIDIIVKEVETANESNSQGAADADVQVEEGQAKEGAWELFVG
Ga0310342_1036006531	3300032820	Seawater	HGSVINKEVEASASHQSNSQGATNTDVQAEEGQTKEGVWELFTG
Ga0372840_112444_328_456	3300034695	Seawater	LIDVIVKEVEAAHQYNSQGAADAKVPAEEGQAKKGAWELFTG
Ga0372840_232415_3_119	3300034695	Seawater	IVKEVEASHQPNSQGAADTDVQAAEGPAKERAWELFTG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters