3300001769: Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Shallow Background Supr60

Overview

Basic Information

• IMG/M Taxon OID: 3300001769
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0094242 | Gp0056359 | Ga0012999
• Sample Name: Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Shallow Background Supr60
• Sequencing Status: Permanent Draft
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 109162239
• Sequencing Scaffolds: 21
• Novel Protein Genes: 22
• Associated Families: 22

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia	1
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
Not Available	10
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1
All Organisms → cellular organisms → Archaea	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Hydrothermal Vent Plume Microbial Communities From The Cayman Rise, Cayman Islands
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Cayman Rise, Cayman Islands

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine hydrothermal vent biome → marine hydrothermal plume → hydrothermal fluid
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Shallow Background, Mid Cayman Rise
• Coordinates
  • Lat. (^o): 18.35
  • Long. (^o): -81.85
  • Alt. (m): N/A
  • Depth (m): 2000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001487	Metagenome	686	Y
F003507	Metagenome / Metatranscriptome	482	Y
F006552	Metagenome	370	Y
F007532	Metagenome / Metatranscriptome	349	Y
F007606	Metagenome / Metatranscriptome	348	Y
F012464	Metagenome / Metatranscriptome	280	Y
F033215	Metagenome / Metatranscriptome	178	Y
F034189	Metagenome / Metatranscriptome	175	Y
F047723	Metagenome	149	Y
F050430	Metagenome / Metatranscriptome	145	N
F054935	Metagenome / Metatranscriptome	139	N
F058220	Metagenome / Metatranscriptome	135	N
F064726	Metagenome / Metatranscriptome	128	Y
F069480	Metagenome	124	N
F079195	Metagenome	116	Y
F080654	Metagenome / Metatranscriptome	115	N
F084703	Metagenome / Metatranscriptome	112	Y
F089571	Metagenome	109	N
F092215	Metagenome / Metatranscriptome	107	N
F096028	Metagenome	105	Y
F099440	Metagenome / Metatranscriptome	103	N
F101336	Metagenome / Metatranscriptome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
supr60_1001404	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia	11550
supr60_1003335	All Organisms → cellular organisms → Bacteria	4167
supr60_1003572	All Organisms → cellular organisms → Bacteria	5741
supr60_1003904	All Organisms → cellular organisms → Bacteria → Proteobacteria	3779
supr60_1006287	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	2770
supr60_1008418	Not Available	2267
supr60_1010822	Not Available	1896
supr60_1011074	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1866
supr60_1011421	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	1826
supr60_1015377	Not Available	1470
supr60_1020992	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	1160
supr60_1028392	All Organisms → cellular organisms → Bacteria	908
supr60_1030041	Not Available	866
supr60_1038814	Not Available	693
supr60_1041183	Not Available	657
supr60_1041959	Not Available	645
supr60_1043413	Not Available	625
supr60_1045855	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	591
supr60_1049355	Not Available	547
supr60_1049705	All Organisms → cellular organisms → Archaea	543
supr60_1063861	Not Available	572

Sequences

Scaffold ID	Protein ID	Family	Sequence
supr60_1001404	supr60_10014048	F089571	MFIIYLDKENERKMLKNIIVIVFSVLFLVVPASSQHVQQKYAITDKDEKVILNDNGTWEYAEEDKQNYYYKKVPPKTYNYEFKSQTWEERLEQAAHEYWRIRAHAELEQLGIPVTRYDPTTSDVPLYLKLEGGRIRTDLDSFTPLARGEVIDISGLWDPDKGDNPTLKIQGKLFLQITMKLDDQKKLFSQYNQRNYIPIPDDFQRILEFRDSLDVISLGMHDYNRDNTHIWPGIPHSFLYAPPGSYYDPNNPPIIHGDGFPYIQRGHLTLSRREIPMTNSVYDNLLKRIDNLEGHGPIKIRYDMGKGIIETVTFEEVWLKINPYNGDPTHILKKVSLKKFE*
supr60_1003335	supr60_10033357	F096028	HITISVDFRVDWASFELIDGDFHSHSFGGSVKGNDSMLEEN*
supr60_1003572	supr60_10035725	F092215	MGAFLMSQTPNDIALAETFHHSEDISGIRQGAGLIQLTEAHYAPFVDDDYCPLAGPALLVPKVIRLADLALGMEVGQLGVGKAAQRCAPSTVGRNCVAAYAQNLSIIILEPLVFLPERGRLRGSTRCEVEYVERKNNYLLALVVGQGNVPIGGGKFEIGGYIANFCRHIPAFIK*
supr60_1003904	supr60_10039042	F064726	MTATQKDSTATANNKRKFRSPNRVLARSFRLARDKWKQKYMELRANLKSARQLATERGTSRDLWRAEYDAANQRAIQAEALAQQRLDKLEQLRSEHQELKKKRI*
supr60_1006287	supr60_10062872	F054935	MKRRTFLKYTSLISTAVFLPLTQLFGAKPKPKNPFTTFDFNLPLQGSPFRKNCDSLDNYNDISFKAMMEDIVHYRTPAKLRDKLILGIKTEDD*
supr60_1008418	supr60_10084181	F058220	DTLVLYDSHTGVHPYGVRHGEPWHPNQPLVDALLETEHPVFVWSGGGAWYAEIIADKLGLDFPCLDKDEIAFELIQEGDVVIDDQDLGGRRTHNPFEWPETKGRLNPNQL*
supr60_1010822	supr60_10108226	F069480	MYILELCKDVKRVEGNAGQILDEAPKNKPYNTMKTDFFSVFKLVVFL*
supr60_1011074	supr60_10110741	F084703	VLPSSHLRGMFSTAVPRFLPDKLEPLGLSLSGQLRVAS*
supr60_1011421	supr60_10114212	F047723	AALNAPSANNLLKVLGSLKATKKASAKRPVPKKIAINMSLT*
supr60_1015377	supr60_10153773	F050430	LKENIIVGIKIVGMLFFLIVLITTLILPGGVDTLANLFQ*
supr60_1020992	supr60_10209922	F003507	ALMYACGIQDVQADVHQAHFVLPEVLCRFRSRLDDALMEELLQIQATAALDAGLVSPEHLVVDTYASEQGSQRVTDATTLYKAKKSRRNSTKRR*
supr60_1028392	supr60_10283922	F034189	MTTKLVKWASNDGQIIKSGLSDGRRAKFLPSVVGFAYDWLRIEGHLGNVG*
supr60_1030041	supr60_10300411	F080654	LETVVAEVISEETAESEPVGKTDLEERQNLWNKIHKFDPEASAMDYYDNSEWDLEKMRSDLKVLLEKEKFGR*
supr60_1038814	supr60_10388142	F101336	NSFIPTKTALAGEPSLTSVDPFVSKGTAKTSLCGNSTQPTY*
supr60_1041183	supr60_10411831	F079195	MIGLLIFGLVVLSTICLWILIEERKSWKFLVWFIPILLVVVTSTYVT
supr60_1041959	supr60_10419592	F012464	VSSPTVTEADPLAEPDVAMIEIDPVATEVTNPADETVATAVFVDDHVTVAPGIVAPSASVTVGVSVAVSANEENERLVGDSVTEDAT*VTVTEADPLAEPDVAMI
supr60_1043413	supr60_10434132	F007606	MKWKFIIVMVVALVLSGCAKNVADKNNDLGSGDKSNLPVTLASLIEHAEYCKAIYDSGGDQKDEVAFEVKQDNGISIIIIRGTANESNVQSDIDVRLVSDARTGI
supr60_1045855	supr60_10458551	F099440	VQLIKLKNQVLNGAKLIDGNGRKIMVCGFHNTEQEKYIENFSQWTCNLLASCIIYVD*
supr60_1049355	supr60_10493552	F007532	MKDKNKAIIDYVIRWLDSNIDEPPPEGVQEDSANLKEKINLALDPKTTAQNINDGDF*
supr60_1049355	supr60_10493553	F001487	MKKFTIEVSHASAGQLQTIAAELKIMANSWEKFGPRISINGQAVQPPALRMTPTEE
supr60_1049705	supr60_10497052	F006552	YPTVWEATPKVEIPLLISPVLKIKSSRINPVANIPKPIPIAKKAIDILNNVGLPVFLNPIYEIVPITRPTKSPTKFRIISRKNSNYADSATVLNKVSEQVF*
supr60_1063861	supr60_10638611	F033215	LVCKLAKLSATVLERDALSVVNEMLVVLEPLQVPATAKLPPRLRVVFEVLNEAPLANVAPIGRLRVPPVEEKERVPAVALIPPLRDKSALPVTIFSPAASRVTGCATLRLDILSSSVKAKLAKSSVPTDREALSSIVEFAAKRRVVELSGSTPLKSCTPATSRMPPESVSALAFVVNVVFFVFSVAPVSD