Sample 3300001765

Overview

Basic Information
IMG/M Taxon OID	3300001765 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0045862 \| Gp0056367 \| Ga0012997
Sample Name	Sinkhole freshwater microbial communities from Lake Huron, USA - combined 2007-2012
Sequencing Status	Permanent Draft
Sequencing Center	University of Michigan
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	123496144
Sequencing Scaffolds	11
Novel Protein Genes	12
Associated Families	10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea	2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Peniculida → Parameciidae → Paramecium	1
Not Available	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Sinkhole Freshwater Microbial Communities From Lake Huron, Us
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Sinkhole Freshwater → Sinkhole Freshwater Microbial Communities From Lake Huron, Us

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater lake biome → sinkhole → fresh water
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	Middle Island Sinkhole, Lake Huron Michigan, USA
Coordinates	Lat. (^o)	45.19843	Long. (^o)	-83.32721	Alt. (m)	N/A	Depth (m)	23
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F011397	Metagenome / Metatranscriptome	291	Y
F022996	Metagenome	212	Y
F030615	Metagenome	185	Y
F044934	Metagenome / Metatranscriptome	153	Y
F057876	Metagenome / Metatranscriptome	135	Y
F057919	Metagenome / Metatranscriptome	135	Y
F089552	Metagenome	109	Y
F092108	Metagenome / Metatranscriptome	107	Y
F096680	Metagenome / Metatranscriptome	104	Y
F103256	Metagenome	101	Y

Family

Category

Number of Sequences

3D Structure?

F011397

Metagenome / Metatranscriptome

291

F022996

Metagenome

212

F030615

Metagenome

185

F044934

Metagenome / Metatranscriptome

153

F057876

Metagenome / Metatranscriptome

135

F057919

Metagenome / Metatranscriptome

135

F089552

Metagenome

109

F092108

Metagenome / Metatranscriptome

107

F096680

Metagenome / Metatranscriptome

104

F103256

Metagenome

101

Scaffold	Taxonomy	Length	IMG/M Link
MIS_1000127	All Organisms → cellular organisms → Bacteria	42586	Open in IMG/M
MIS_1000445	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea	38030	Open in IMG/M
MIS_1000465	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Peniculida → Parameciidae → Paramecium	38244	Open in IMG/M
MIS_1001013	Not Available	91901	Open in IMG/M
MIS_1001106	Not Available	62208	Open in IMG/M
MIS_1001159	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	35675	Open in IMG/M
MIS_1001238	All Organisms → cellular organisms → Bacteria	72309	Open in IMG/M
MIS_1001318	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea	34026	Open in IMG/M
MIS_1001704	Not Available	25707	Open in IMG/M
MIS_1002039	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	25764	Open in IMG/M
MIS_1005634	All Organisms → cellular organisms → Bacteria	5216	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

MIS_1000127

All Organisms → cellular organisms → Bacteria

42586

Open in IMG/M

MIS_1000445

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea

38030

Open in IMG/M

MIS_1000465

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Peniculida → Parameciidae → Paramecium

38244

Open in IMG/M

MIS_1001013

Not Available

91901

Open in IMG/M

MIS_1001106

Not Available

62208

Open in IMG/M

MIS_1001159

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes

35675

Open in IMG/M

MIS_1001238

All Organisms → cellular organisms → Bacteria

72309

Open in IMG/M

MIS_1001318

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea

34026

Open in IMG/M

MIS_1001704

Not Available

25707

Open in IMG/M

MIS_1002039

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes

25764

Open in IMG/M

MIS_1005634

All Organisms → cellular organisms → Bacteria

5216

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
MIS_1000127	MIS_100012714	F096680	MQTILPSVIFLSMVIIFGVDATRKRRAFLKKHNHN*
MIS_1000445	MIS_100044533	F057919	MHEIFSLFGFFTFLTIAVQILSGVMLSFSLVPEPMLIPLVRDEEDLEDLYTDDFF*
MIS_1000465	MIS_100046555	F044934	MKYSGFGAQDVLLVAVVLAGISTTISFTNLLITRRTLVAPGLRNRRVLIPFITISLLLTLRLLAIVTPILGAAVLMSLMDRH*
MIS_1001013	MIS_100101381	F092108	MGILRISAKCSDLCWTEYTDAKGNKTESDGYVPEGIGISSDGDCGDYVSLDIDMQTGQIQNWKPVSDARVIKAQKSA*
MIS_1001013	MIS_10010139	F011397	MKDFELLKRTYPVSHYERFCDGFDFIRKNSSEEERLEWGINLNDLQRVIKIGEKYIYQVAKEGKEFKTMCLCFKNYEIIRKNIFKLDDE*
MIS_1001106	MIS_100110625	F103256	MDYKKGQLDEILFMVKRGFSYSDVLMMPIHTRRYYVQYMIELENK*
MIS_1001159	MIS_10011594	F030615	MSKKKFRIISYFKNDIAFYETRVKTWLGWVSFTVFYKTEIVHILSEPSVHKSMAYERIKQYCITNGYNEKDIEITEINTSKPKRWILFQRIYSF*
MIS_1001238	MIS_100123819	F057876	MRIRGNRETKVDKANLIEQIKLNKKNHVREYEKAILAYKEEALNQLSKEFKRVENGALDAKLDLITPINNAKNYDKIIEMFEWEVEDYVVLTQAEFNEYVQDETEFARQAKFSNTFYSNSI*
MIS_1001318	MIS_100131824	F057919	MHEIFSLFGFFTFLTIAIQLLSGTMLSFSLVPEPMLIPLIREEEDLEDLYTDDFF*
MIS_1001704	MIS_100170421	F022996	METIEKIDILKIKSDIKEMVELQKFYKNQRKTVKLVGERKLQASDARNKHQSNRENLRAMYAAYGIARGKSFSQIERRYSEENHPLLQYQWKIDKIMEQYKIEVKVESDENRAIA*
MIS_1002039	MIS_10020392	F030615	MSKKKFRIISYIKNDIAFYETRVKTWLGWVSFTVFYKTEILHILSEPSVHKSMAYERIKQYCITNGYNEKDIEITEINTSKPKRWIFFQRIYSF*
MIS_1005634	MIS_10056348	F089552	VNREPTRESERARIEKSFDVFGLSEAHRALILEALDSDAWDWFEDCDGCTAVNELHWPTKYFPPCLRHDFDWATGNGGLTGSKNFYDLQRAYGVPKWRSGLRAGVVTAVWYAWRRWVK*

Scaffold ID

Protein ID

Family

Sequence

MIS_1000127

MIS_100012714

F096680

MQTILPSVIFLSMVIIFGVDATRKRRAFLKKHNHN*

MIS_1000445

MIS_100044533

F057919

MHEIFSLFGFFTFLTIAVQILSGVMLSFSLVPEPMLIPLVRDEEDLEDLYTDDFF*

MIS_1000465

MIS_100046555

F044934

MKYSGFGAQDVLLVAVVLAGISTTISFTNLLITRRTLVAPGLRNRRVLIPFITISLLLTLRLLAIVTPILGAAVLMSLMDRH*

MIS_1001013

MIS_100101381

F092108

MGILRISAKCSDLCWTEYTDAKGNKTESDGYVPEGIGISSDGDCGDYVSLDIDMQTGQIQNWKPVSDARVIKAQKSA*

MIS_1001013

MIS_10010139

F011397

MKDFELLKRTYPVSHYERFCDGFDFIRKNSSEEERLEWGINLNDLQRVIKIGEKYIYQVAKEGKEFKTMCLCFKNYEIIRKNIFKLDDE*

MIS_1001106

MIS_100110625

F103256

MDYKKGQLDEILFMVKRGFSYSDVLMMPIHTRRYYVQYMIELENK*

MIS_1001159

MIS_10011594

F030615

MSKKKFRIISYFKNDIAFYETRVKTWLGWVSFTVFYKTEIVHILSEPSVHKSMAYERIKQYCITNGYNEKDIEITEINTSKPKRWILFQRIYSF*

MIS_1001238

MIS_100123819

F057876

MRIRGNRETKVDKANLIEQIKLNKKNHVREYEKAILAYKEEALNQLSKEFKRVENGALDAKLDLITPINNAKNYDKIIEMFEWEVEDYVVLTQAEFNEYVQDETEFARQAKFSNTFYSNSI*

MIS_1001318

MIS_100131824

F057919

MHEIFSLFGFFTFLTIAIQLLSGTMLSFSLVPEPMLIPLIREEEDLEDLYTDDFF*

MIS_1001704

MIS_100170421

F022996

METIEKIDILKIKSDIKEMVELQKFYKNQRKTVKLVGERKLQASDARNKHQSNRENLRAMYAAYGIARGKSFSQIERRYSEENHPLLQYQWKIDKIMEQYKIEVKVESDENRAIA*

MIS_1002039

MIS_10020392

F030615

MSKKKFRIISYIKNDIAFYETRVKTWLGWVSFTVFYKTEILHILSEPSVHKSMAYERIKQYCITNGYNEKDIEITEINTSKPKRWIFFQRIYSF*

MIS_1005634

MIS_10056348

F089552

VNREPTRESERARIEKSFDVFGLSEAHRALILEALDSDAWDWFEDCDGCTAVNELHWPTKYFPPCLRHDFDWATGNGGLTGSKNFYDLQRAYGVPKWRSGLRAGVVTAVWYAWRRWVK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300001765: Sinkhole freshwater microbial communities from Lake Huron, USA - combined 2007-2012

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences