Basic Information | |
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Family ID | F096680 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 104 |
Average Sequence Length | 38 residues |
Representative Sequence | METILPSVIFVSMIVVFGVDATRKRRDFLKKHKRA |
Number of Associated Samples | 79 |
Number of Associated Scaffolds | 104 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 64.42 % |
% of genes near scaffold ends (potentially truncated) | 13.46 % |
% of genes from short scaffolds (< 2000 bps) | 74.04 % |
Associated GOLD sequencing projects | 72 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.49 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (82.692 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen (8.654 % of family members) |
Environment Ontology (ENVO) | Unclassified (19.231 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) (36.538 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Transmembrane (alpha-helical) | Signal Peptide: | Yes | Secondary Structure distribution: | α-helix: 47.62% β-sheet: 0.00% Coil/Unstructured: 52.38% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.49 |
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Visualization |
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All Organisms Unclassified |
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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
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Visualization |
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Freshwater Sediment Wetland Groundwater Sediment Freshwater Lake Sediment Freshwater Sediment Freshwater Freshwater Microbial Mat Anoxic Lake Water Freshwater Lake Sediment Wetland Sediment Freshwater Wetlands Sinkhole Freshwater Groundwater Sinkhole Freshwater Freshwater Estuarine Wetland Saline Water Soil Sediment (Intertidal) Groundwater Sediment Soil Untreated Peat Soil Natural And Restored Wetlands Rice Paddy Soil Deep Subsurface Sediment Fen Peat Soil Activated Sludge Activated Sludge Active Sludge Activated Sludge Wastewater Treatment Plant Wastewater Effluent |
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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Geographical Distribution | |
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Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Protein ID | Sample Taxon ID | Habitat | Sequence |
LWSO_01169240 | 2088090005 | Freshwater Sediment | METILPSVIFVSMVVIFGVDATRKRRDFLKKHKRA |
TB_PC08_66DRAFT_100297381 | 3300000228 | Groundwater | MERIMQTILPSVIFLSIVIVFGVDANRKRRDFLKKRNRA* |
TB_PC08_66DRAFT_100393083 | 3300000228 | Groundwater | METIFPSVLFLSMIIVFSVDATRKRREFLKKHNRA* |
TB_GS10_10DRAFT_100043016 | 3300000230 | Groundwater | METILPSVIFLSMVVVFGVDATRKRREFLKKRNRI* |
TB_GS10_10DRAFT_100974121 | 3300000230 | Groundwater | METILPSVIFVSMIVVFGVDATRKRRDFLKKHKRA* |
TB_FS06_10DRAFT_10173623 | 3300000233 | Groundwater | MQTILPSVIFLSIVIVFGVDANRKRRDFLKKRNRA* |
JGIcombinedJ13530_1046777422 | 3300001213 | Wetland | METIIPSVIFVSLIVVFGVDARQKRRDFLRKQKQA* |
JGIcombinedJ13530_1096392841 | 3300001213 | Wetland | METILPSVIFVSMVVIFGVDATRKRRAFLKKHKRA* |
MIS_100012714 | 3300001765 | Sinkhole Freshwater | MQTILPSVIFLSMVIIFGVDATRKRRAFLKKHNHN* |
MIS_11412242 | 3300002024 | Sinkhole Freshwater | MELIMETILQSVVFVSMIVVFGVDATRKRREFLKKRNRA* |
MIS_1000214017 | 3300002026 | Sinkhole Freshwater | METILPSVIFLSMVVVFGVDATRKRREFLKKHDRA* |
MIS_100266013 | 3300002026 | Sinkhole Freshwater | METILPSVIFLSMVVVFGVDATRKRRDFLKKRNRI* |
MIS_100411645 | 3300002027 | Sinkhole Freshwater | METILPSVIFLSMVVVFGVDASRKRREFLKKRNRI* |
MIS_100574243 | 3300002027 | Sinkhole Freshwater | MGTILPSVIFLSMIVVFSVDAAQKRRAYLKKRKLT* |
MIS_101098673 | 3300002027 | Sinkhole Freshwater | METIFPAFIFVSIVVVFSVDANRKRREFLKKYRSE* |
JGI20214J51088_105279652 | 3300003432 | Wetland | MESIMETILPSVIFLSMIVVFGVDATRKRREFLKKQKRV* |
JGI20214J51650_104083652 | 3300003541 | Wetland | VYHFSIQMESIMETILPSVIFLSMIVVFGVDATRKRREFLKKQKRV* |
Ga0066599_1006146911 | 3300004282 | Freshwater | MESIMETILPSVIFLSMVVVFGVDATRKRREFLKKHNRA* |
Ga0062378_101207552 | 3300004780 | Wetland Sediment | MYHIEHRNGEHMETILPSVIFVSMIVIFGVDATRKRRDFLKKQKRA* |
Ga0071116_10103634 | 3300005077 | Sinkhole | MELSMETILQSVVFVSMIIVFGVDATRKRREFLRKHKRA* |
Ga0073900_101981532 | 3300005659 | Activated Sludge | METILPSVIFLSMVVVFSVDATRKRREFLKKHKSA* |
Ga0074479_103194743 | 3300005829 | Sediment (Intertidal) | METILPSVIFVSMVVVFGLDATRKRRDFLKKNKRA* |
Ga0074479_107405091 | 3300005829 | Sediment (Intertidal) | RNGERMETILPSVIFVSMIVIFGVDATRKRRDFLKKQKNA* |
Ga0074471_108515583 | 3300005831 | Sediment (Intertidal) | MGALVPSVIFLSMVIIFGVDAKRKRRDFLKKQKQA* |
Ga0074471_110529522 | 3300005831 | Sediment (Intertidal) | MQTILPSVIFLSMVVIFGVDASRKRRDFLKKRNRT* |
Ga0075269_101004861 | 3300005905 | Rice Paddy Soil | ETILPSVIFVSMVIVFGVDATRKRRDFLKKHKRA* |
Ga0075156_100453933 | 3300005982 | Wastewater Effluent | METILPSVIFVSMVVIFGVDATRKRRDFLKKIKRA* |
Ga0082021_10166455 | 3300006092 | Wastewater Treatment Plant | METILSSVIFVSMVLVFGVDATRKRRDYLKKRSRN* |
Ga0105044_101936902 | 3300007521 | Freshwater | METILTSVIFVSMVVIFGVDATRKRRDFLKKHKRA* |
Ga0105105_100807101 | 3300009009 | Freshwater Sediment | MESIMQTILPSVIFLSMVIVFGVDATLKRREFLKKNNRV* |
Ga0105105_104625031 | 3300009009 | Freshwater Sediment | MENFMETILPSVIFLSMIVVFGVDATRKRREFLKKNNRA* |
Ga0105105_105578932 | 3300009009 | Freshwater Sediment | MELVMETIVQSVIFISMIVIFGVDASRKRREFLKKQNRS* |
Ga0105105_106416512 | 3300009009 | Freshwater Sediment | MESFMETILPSVIFLSMVVVFGVDATRKRREFLKKRNRT* |
Ga0105105_108494101 | 3300009009 | Freshwater Sediment | MEIIMETILQSVVFVSMIVVFGVDATRKRREFLRKQKRA* |
Ga0105048_1000556410 | 3300009032 | Freshwater | MYHLIIENGAYMETFLPSVIFLSMVVVFSVDATRKRRDFLKKRNRS* |
Ga0105098_105425742 | 3300009081 | Freshwater Sediment | MGTYQMEIIMQTILPSVIFLSMIVVFGVDASRKRRDFLRKQKRA* |
Ga0105047_1000076632 | 3300009083 | Freshwater | METILPSVIFVSIVVVFSIDATRKRRDFLKKHKRA* |
Ga0102851_117934651 | 3300009091 | Freshwater Wetlands | METILPSVIFVSMMIVFGVDATRKRRDFLKKRNRA* |
Ga0115027_106079562 | 3300009131 | Wetland | METILPSVIFVSMIVIFGVDASRKRRDFLKKRKRA* |
Ga0115027_114569901 | 3300009131 | Wetland | METILPSVIFVSMVVIFGVDAAIKRRDFLKKHKRA* |
Ga0115027_114882112 | 3300009131 | Wetland | MEINMETIFQSVVFVSMIIVFGVDATRKRRDFLRKQKRA* |
Ga0115027_117673811 | 3300009131 | Wetland | MERFMETLLPSVIFLSMVIVFGVDASRKRREFLKKQNQT* |
Ga0105091_101321852 | 3300009146 | Freshwater Sediment | MENIMETILPSVIFLSMVVIFGVDATRKRREFLKKRNRA* |
Ga0115028_103683812 | 3300009179 | Wetland | MESIMQTILPSVIFLSMVIVFGVDASRKRRDFLKKNNRV* |
Ga0116204_12702261 | 3300010293 | Anoxic Lake Water | MEIIMETILQSVIFISMIVVFGVDATHKRREFLRKQKRA* |
Ga0137456_11519751 | 3300011428 | Soil | CRNGEYMETILPSVIFVSMIVIFGVDAARKRRDFLKKHKRA* |
Ga0119867_11530302 | 3300012018 | Activated Sludge | METIFPSFLILSMVVVFSVDATRKRREFLNKRKTA* |
Ga0137322_10298182 | 3300012146 | Soil | METILPSVIFVSMVVIFGVDATRKRRDFLKKHKRA* |
Ga0137350_11202701 | 3300012166 | Soil | LKSKINTLMYHGYIEMESVMETILPSVIFVSIIVVFGVDATRKRRDFLKKHKRA* |
Ga0154020_101846352 | 3300012956 | Active Sludge | METILPSVIFLSMVVVISVDATRKRREFLKKHKSA* |
Ga0154020_104522233 | 3300012956 | Active Sludge | YMETILPSVIFLSMVVVFSVDATRKRREFLKKHKSA* |
(restricted) Ga0172368_101051002 | 3300013123 | Freshwater | METILPSVIFLSMIIVFSVDASRKRREFLKKHKRA* |
(restricted) Ga0172368_102648042 | 3300013123 | Freshwater | METILPSVIFLSMIIVFGVDGTRKRREYLKKQKRS* |
(restricted) Ga0172369_103162582 | 3300013125 | Freshwater | ETILPSVIFLSMIIVFSVDASRKRREFLKKHKRA* |
(restricted) Ga0172367_1000030266 | 3300013126 | Freshwater | MGIQMEIIMETILQSVVFVSMIVVFGVDATRKRREFLRKQKRA* |
(restricted) Ga0172373_101172774 | 3300013131 | Freshwater | METLLSPFLFLSMIVVFSVDAQRKRREFLKKHTTA* |
Ga0075358_10205601 | 3300014303 | Natural And Restored Wetlands | MAMEINMETIFQSVIFLSMIVVFGVDATRKRREFLRKQKRA* |
Ga0075358_10608831 | 3300014303 | Natural And Restored Wetlands | RNGERMETILPSVIFVSMIVIFGVDATRKRRDFLKKHKRA* |
Ga0180070_10403412 | 3300015251 | Soil | METILPSVIFVSMVVVFGVDAARKRRDFLKKRDRA* |
Ga0184629_102430792 | 3300018084 | Groundwater Sediment | METIFTSIIFVSMVVVFGVDATRKRRDFLKKNKSA |
Ga0207193_100208416 | 3300020048 | Freshwater Lake Sediment | METILPSVIFLSMVVVFGVDATRKRREFLKKHDRA |
Ga0207193_10282426 | 3300020048 | Freshwater Lake Sediment | METILPSVIFLSMVVVFGVDASRKRREFLKKRNRI |
Ga0163152_100750053 | 3300020213 | Freshwater Microbial Mat | METILTSVIFVSMVVIFGVDATRKRRDFLKKHKRA |
Ga0206227_11304091 | 3300021063 | Deep Subsurface Sediment | METILPSVIFVSMVVVFGVDAARKRRDFLKKRNRA |
Ga0210377_104873952 | 3300021090 | Groundwater Sediment | METILPSVIFLSMIVVFGVDATRKRRDFLKKHKRA |
Ga0210324_12723252 | 3300021333 | Estuarine | METILPSVIFVSMVVVFGLDATRKRRDFLKKNKRA |
(restricted) Ga0233424_100262513 | 3300023208 | Freshwater | MESIFPSVIFLSMIIIFSVDAKRKRRDFLKKNKRA |
(restricted) Ga0233425_1000733716 | 3300024054 | Freshwater | MRIYPLEINMETILQSVVFVSMVIVFGVDATRKRREFLRKQKRA |
Ga0209835_11638902 | 3300025115 | Anoxic Lake Water | MEIIMETILQSVIFISMIVVFGVDATHKRREFLRKQKRA |
Ga0209575_101257362 | 3300027739 | Freshwater | MELIMETILQSVVFVSMIVVFGVDATRKRREFLKKRNRA |
Ga0209288_101075032 | 3300027762 | Freshwater Sediment | METILPSVIFLSMIVVFGVDATRKRREFLKKNNRA |
Ga0209288_102287412 | 3300027762 | Freshwater Sediment | MESFMETILPSVIFLSMVVVFGVDASRKRREFLKKRNRI |
Ga0209277_101279452 | 3300027776 | Wastewater Effluent | METILPSVIFVSMVVIFGVDATRKRRDFLKKIKRA |
Ga0209181_1000037425 | 3300027878 | Freshwater | MYHLIIENGAYMETFLPSVIFLSMVVVFSVDATRKRRDFLKKRNRS |
Ga0208980_100862133 | 3300027887 | Wetland | METILPSVIFVSMIVIFGVDATRKRRDFLKKQKRA |
Ga0209496_101872873 | 3300027890 | Wetland | MYHIEHRNGEHMETILPSVIFVSMIVIFGVDATRKRRDFLKKQKRA |
Ga0209668_106650732 | 3300027899 | Freshwater Lake Sediment | MYHIEHRNGERMETILPSVIFVSIIVIFGVDATRKRRDFLKKQKRA |
Ga0268283_10903542 | 3300028283 | Saline Water | METIIPSVIFLSMVVVFGVDANRKRRDFLKKHKRA |
Ga0302159_100683761 | 3300028646 | Fen | METILPSIIFASIIVVFGVDATRKRRDFLKKHKRF |
Ga0302162_101258512 | 3300028649 | Fen | METILPSVIFVSMVIVFGFDATRKRRDYLKKDKRA |
Ga0302167_100462862 | 3300028676 | Fen | METILPSVIFVSMIVIFGVDATRKRRDFLKKHKRA |
Ga0268298_1000094019 | 3300028804 | Activated Sludge | METIFPSFLFLSMVVVFSVDATRKRREFLKKRKTA |
Ga0268298_100199873 | 3300028804 | Activated Sludge | METLLSPFLFLSMIVVFSVDAKRKRREFLKKHTPA |
Ga0268298_103134781 | 3300028804 | Activated Sludge | METILPSVIFLSMVFVIGVDAARKRRDFLKKNKHAS |
Ga0302293_100465082 | 3300029981 | Fen | METILPSVIFVSMIVVFGVDATRKRRDFLKKNKSA |
Ga0302173_103244721 | 3300030055 | Fen | VSWHCRNGEHMETILPSVIFVSIVVVFGLDATRKRRDFLKKHKRA |
Ga0302212_10850092 | 3300030492 | Fen | METILPSVIFVSMIVVFGVDATRKRRDFLKKNKRA |
Ga0311366_100709871 | 3300030943 | Fen | METILPSVIFVSMVIVFGFDATRKRREFLKKHKRA |
Ga0311364_124097892 | 3300031521 | Fen | EHMETILPSVIFVSIVVVFGLDATRKRRDFLKKHKRA |
Ga0302322_1019577492 | 3300031902 | Fen | CMETILPSIIFASIIVVFGVDATRKRRDFLKKHKRF |
Ga0335397_1000044241 | 3300032420 | Freshwater | METILPSVIFVSIVVVFSIDATRKRRDFLKKHKRA |
Ga0316625_1007466912 | 3300033418 | Soil | MESFMETILPSVIFLSMVVVFGVDATRKRREFLKKRNRV |
Ga0326726_110935062 | 3300033433 | Peat Soil | SEVSSHYRNGERMETILPSVIFVSMVVIFGVDAARKRRDFLKKNKRA |
Ga0316627_1013510692 | 3300033482 | Soil | VRIQMEIIMETILQSVVFVSMIIVFGVDATRKRRDFLRKQKRA |
Ga0316627_1023289572 | 3300033482 | Soil | KHRNGERMETILTSVIFVSIVVVFGVDATRKRRDFLKKHKRA |
Ga0316616_1002195883 | 3300033521 | Soil | MRIYQMEIIMETFFQSVVFVSMIIVFGVDATRKRRDFLRKQKRS |
Ga0316616_1020614562 | 3300033521 | Soil | METILPSMIFVSMIVIFGVDASRKRRDFLKKHKRA |
Ga0316617_1000140305 | 3300033557 | Soil | METILPSVIFVSMVVIFGVDAAIKRRDFLKKHKRA |
Ga0316617_1009496392 | 3300033557 | Soil | METIFQSVVFVSMIIVFGVDATRKRRDFLRKQKRA |
Ga0335027_0554337_169_276 | 3300034101 | Freshwater | METILPSVIFLSMIIVFSLDATRKRREFLKNQKPT |
Ga0370498_042978_872_991 | 3300034155 | Untreated Peat Soil | MESFMETILPSVIFLSMVVVFGVDATRKRRAFLKKRSRI |
Ga0370502_0028104_1424_1531 | 3300034156 | Untreated Peat Soil | METILPSVIFVSMVVIFGLDATRKRRDFLKKHKRA |
Ga0370507_0108154_51_170 | 3300034158 | Untreated Peat Soil | MESFMETILPSVIFLSMVVIFGVDATRKRRAFLKKRSRI |
Ga0370503_0256197_2_127 | 3300034196 | Untreated Peat Soil | YRNGEYMETILPSVIFVSMVVIFGLDATRKRRDFLKKHKRA |
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