3300001635: Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF009

Overview

Basic Information

• IMG/M Taxon OID: 3300001635
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0085736 | Gp0057260 | Ga0003848
• Sample Name: Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF009
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 15401296
• Sequencing Scaffolds: 6
• Novel Protein Genes: 7
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → cellular organisms → Bacteria → Acidobacteria	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura flavalba	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): forest biome → land → forest soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Harvard Forest LTER, Petersham, MA, USA
• Coordinates
  • Lat. (^o): 42.532967
  • Long. (^o): -72.209488
  • Alt. (m): N/A
  • Depth (m): 0 to .1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034659	Metagenome / Metatranscriptome	174	Y
F049817	Metagenome / Metatranscriptome	146	Y
F050728	Metagenome / Metatranscriptome	145	Y
F056775	Metagenome / Metatranscriptome	137	Y
F061685	Metagenome / Metatranscriptome	131	Y
F072617	Metagenome / Metatranscriptome	121	Y
F082976	Metagenome / Metatranscriptome	113	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI20243J16304_100376	Not Available	724
JGI20243J16304_100846	All Organisms → cellular organisms → Bacteria → Acidobacteria	613
JGI20243J16304_101842	Not Available	525
JGI20243J16304_102054	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura flavalba	514
JGI20243J16304_102281	All Organisms → cellular organisms → Bacteria → Acidobacteria	503
JGI20243J16304_102293	Not Available	502

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI20243J16304_100376	JGI20243J16304_1003761	F082976	GRAKRENIQVTFVDLPPTDYAEAGVTVADQKRTP*
JGI20243J16304_100846	JGI20243J16304_1008461	F034659	AESVPGAWSIFRGISEQKATGLGAVAGGLTNSAFSPAFWVLTLLFFVLFFAASRLGNKILRVFLFWIPTLTVSVLGTAFVALLTYVFMHFRHG*
JGI20243J16304_101157	JGI20243J16304_1011572	F050728	SDKLAEVEGKLRGTNVPTMEQALVVPAARLRRPEI*
JGI20243J16304_101842	JGI20243J16304_1018421	F056775	WEDGGGVTHRFQIGYDPDDAEARLFLEGIELHVRFRLETFDADADASRTKGPTGEEL*
JGI20243J16304_102054	JGI20243J16304_1020541	F072617	QGITLTSGGGNTVKATVSLGPLSATAVAEVTQSGSNTINVKVINAAGIPSDVLGNLANFSFSIPKLPPGVSIQSISVTQQGVMVTISGTHTTLSQNS*
JGI20243J16304_102281	JGI20243J16304_1022811	F061685	LLSAHCATHQLRLRFSTEDLARFGQRDILRKSVQSAAALSEFYSSIEKKIPAIEAGGESAPQVTDEQIAEAVKRVSVYFKEQREHYLASAVPLSNHEKALMWPFFSAALLDRVRIVELRGARVPNPPFYEEYKALGFVNLPEVTHMHSLTFLDVVVFNEKMSERALF
JGI20243J16304_102293	JGI20243J16304_1022931	F049817	GLQREREERYRKDRESWRARLRQYQGARQLPTSARDGWWSLDDGDEYDEMCRWPVISDDFVRGPPPAEAWESA*