Basic Information | |
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Family ID | F082976 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 113 |
Average Sequence Length | 39 residues |
Representative Sequence | LIEDGKAKRENIHVSFHDLPSTNYAEAGVLVADQKRTP |
Number of Associated Samples | 101 |
Number of Associated Scaffolds | 113 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 5.31 % |
% of genes near scaffold ends (potentially truncated) | 89.38 % |
% of genes from short scaffolds (< 2000 bps) | 87.61 % |
Associated GOLD sequencing projects | 90 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.21 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (80.531 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (28.319 % of family members) |
Environment Ontology (ENVO) | Unclassified (27.434 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (50.442 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 10.61% β-sheet: 0.00% Coil/Unstructured: 89.39% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.21 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Freshwater Sediment Bog Forest Soil Bog Peatland Freshwater Sediment Thermal Springs Watersheds Vadose Zone Soil Tropical Forest Soil Grasslands Soil Surface Soil Peatlands Soil Soil Grasslands Soil Soil Hardwood Forest Soil Soil Soil Tropical Peatland Forest Soil Soil Corn, Switchgrass And Miscanthus Rhizosphere Soil Bog Plant Litter Biofilm Rhizosphere |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
JGI12631J13338_10017351 | 3300001131 | Forest Soil | DGKAKRENIQVTFVDLPATDYAEAGVTVADQKRTP* |
JGI12635J15846_100334236 | 3300001593 | Forest Soil | EDGKAKRENIHVSFHDVPSTNYAEAGVLVVDQKRTP* |
JGI20243J16304_1003761 | 3300001635 | Forest Soil | GRAKRENIQVTFVDLPPTDYAEAGVTVADQKRTP* |
Ga0062385_105068181 | 3300004080 | Bog Forest Soil | ERITLALIEDGRAKRENIQVTFVDLPATDYAEAGVTVADQKRTP* |
Ga0062384_1004370243 | 3300004082 | Bog Forest Soil | TLALIEDGRAKRENIQVTFVDLPPTDYAEAGVTVADQKRTP* |
Ga0062389_1009647523 | 3300004092 | Bog Forest Soil | SVLIEDGRAKRENIHVSFHDLPATNYAEAGVLVADQKRTP* |
Ga0070713_1009650641 | 3300005436 | Corn, Switchgrass And Miscanthus Rhizosphere | ERITQALIEDGRAKRESIQVTFVDLPPTDYAEAGVTVADQKRTP* |
Ga0066697_100420333 | 3300005540 | Soil | LIEDGKAKRENIHVSFHDVPAANYAEAGMLVADQKRTP* |
Ga0070732_103076533 | 3300005542 | Surface Soil | QTLETEGRAKRENIHVAFLDVPKTDYAEGGVTVADQKRVP* |
Ga0066691_104095173 | 3300005586 | Soil | EEGRAKRENIHVAFLDVPATNYAEAGVLVADQKRSP* |
Ga0066654_100375484 | 3300005587 | Soil | LIEDGKAKRENIHVSFHDVPATHYAEAGVLVADQKRRP* |
Ga0070763_101201314 | 3300005610 | Soil | AERITQALIEDGRAKRENIQVTFVDLPPTDYAEAGVTVADQKRTP* |
Ga0070763_101251401 | 3300005610 | Soil | ALIEDGRAKRENIQVTFVDLPPTDYAEAGVTVADQKRTP* |
Ga0070764_105050331 | 3300005712 | Soil | DTLIKEGNAKKENIQVTFVDLPPTDYAEAGVTVADQKRSK* |
Ga0070766_100834643 | 3300005921 | Soil | GRAKRENIHVSFHDVPATNYAEAGVLVADQKRTP* |
Ga0075028_1007789512 | 3300006050 | Watersheds | MGAKRENIHVTFLDVAATNYAEAGVLVVDQKRTP* |
Ga0075019_110882042 | 3300006086 | Watersheds | ITTVLIEDGRAKRENIHVSFHDVPSTDYAEAGVLVVDQKRTP* |
Ga0070765_1007380581 | 3300006176 | Soil | KLAERVTLALIEDGRAKRENIQVTFVDLPPTDYAEAGVTVADQKRTP* |
Ga0070765_1013001952 | 3300006176 | Soil | RITLALIEDGRAKREHIQVTFVDLPPTDYAEAGVTVADQKRTP* |
Ga0099791_100786122 | 3300007255 | Vadose Zone Soil | VLIEDGKAKRENIHVSFHDVPATNYAEGGVLVVDQKRTP* |
Ga0099791_100876412 | 3300007255 | Vadose Zone Soil | EDGKAKRENIHVSFHDLPSTNYAEAGVLVVDQKRTP* |
Ga0099829_117363142 | 3300009038 | Vadose Zone Soil | DGRAKRENIHVAFQDVPATNYAEAGVLVADQKRTP* |
Ga0099830_110891181 | 3300009088 | Vadose Zone Soil | VTRALEEEGRAKRENIHVAFLDVPATNYAEAGVLVADQKRSP* |
Ga0099828_105567333 | 3300009089 | Vadose Zone Soil | VLIEDGKAKRENIHVSFHDLPSANYAEAGVLVVDQKRAP* |
Ga0099827_105802631 | 3300009090 | Vadose Zone Soil | RITQALEEDGRAKRENIHVSFLDVPAANYAEAGVVVADQKRAP* |
Ga0116222_14603492 | 3300009521 | Peatlands Soil | DGKAKRENIHVSFHDVPSTNYAEAGVLVVDQKRTP* |
Ga0116105_12456191 | 3300009624 | Peatland | RITLALIEDGRAKRENIQVTFVDLPPTDYAEAGVTVADQKRTP* |
Ga0116223_106580972 | 3300009839 | Peatlands Soil | LIEEGRAKRENIQVTFVDLPPTDYAEAGVTVADQKRTP* |
Ga0126373_108719642 | 3300010048 | Tropical Forest Soil | VLIEDGKAKRENIHVSFHDVPATDYAEAGVLVADQKRVP* |
Ga0134071_102962532 | 3300010336 | Grasslands Soil | VLIEDGKAKRENIHVSFHDVPATNYAEAGVLVVDQKRAP* |
Ga0134062_105262011 | 3300010337 | Grasslands Soil | EDGRAKRENIHVSFHDVPSTNYAEAGVLVADQKRTP* |
Ga0126378_122331682 | 3300010361 | Tropical Forest Soil | LMEDGKAKRENIHVSFHDVPATNYAEAGVLVVDQKRTP* |
Ga0136847_119345021 | 3300010391 | Freshwater Sediment | EDGRAKLENIQVTFHDLPATDYAEAGVMVADQKRTP* |
Ga0137389_114768061 | 3300012096 | Vadose Zone Soil | VTNVLIEEGKAKRENIHVSFHDLPSTNYAEAGLLVVDQKRSP* |
Ga0137399_103606204 | 3300012203 | Vadose Zone Soil | TNVLIEDGRAKRENIHVSFHDVAPSNYAEAGVLVADQKRTP* |
Ga0137379_102809094 | 3300012209 | Vadose Zone Soil | DGRAKRENIHVSFLAVPAANYAEAGVVVADQKRAP* |
Ga0137378_115338852 | 3300012210 | Vadose Zone Soil | IEDGKAKRENIHVSFHDVASTNYAEAGVLVVDQKRTP* |
Ga0137387_113085701 | 3300012349 | Vadose Zone Soil | GKAKRENIHVTFHDLPSTNYAEAGVLVADQKRTP* |
Ga0137360_109367252 | 3300012361 | Vadose Zone Soil | TQALIEDGRAKRENIQVTFVDLPPTDYAEAGVTVADQKRTA* |
Ga0137361_118308292 | 3300012362 | Vadose Zone Soil | EDGKAKRENIHVSFHDVPATNYAEAGVLVVDQKRAP* |
Ga0137398_102067083 | 3300012683 | Vadose Zone Soil | TAALIEDGKAKRENIHVSFHDLPSTNYAEAGVLVADQKRTP* |
Ga0137359_113067402 | 3300012923 | Vadose Zone Soil | IEDGKARRENIHVSFHDVPATNYAEAGVLVVDQKRTP* |
Ga0137416_115134832 | 3300012927 | Vadose Zone Soil | LIEDGKAKRENIHVSFHDLPSTNYAEAGVLVADQKRTP* |
Ga0137407_107063321 | 3300012930 | Vadose Zone Soil | ILETEGRAKRENMHGAFLAVPATNYAEAGITVADQKRTP* |
Ga0137410_100605615 | 3300012944 | Vadose Zone Soil | EDGKAKRENIHVSFHDVPATNYAEAGVLVVDQKRTP* |
Ga0134078_100389811 | 3300014157 | Grasslands Soil | IEDGKAKRENIHVSFHDVPATNYAEAGVLVVDQKRTP* |
Ga0134078_101138073 | 3300014157 | Grasslands Soil | VLIEDGQAKRENIHVSFHDVPATNYAEAGILVVDQKRTP* |
Ga0181522_108211191 | 3300014657 | Bog | EGRAKKENVHVTFVDLPPSDYAEAGVTVEDQRKKN* |
Ga0137409_100038711 | 3300015245 | Vadose Zone Soil | TSVLIEDGKAKRENIHVSFHDVPATNYAEAGVLVVDQKRIP* |
Ga0137403_106476321 | 3300015264 | Vadose Zone Soil | VLIEDGKAKRENIHVSFHDVPSTNYAEAGVLVVDQKRTP* |
Ga0187802_102512031 | 3300017822 | Freshwater Sediment | ITQALIEDGRAKRENIQVTFVDLPPTDYAEAGVTVADQKRAP |
Ga0187782_110412542 | 3300017975 | Tropical Peatland | IEDGRAKRENIHVAFHDVAATNYAEAGVLVADQKRTP |
Ga0179592_101477703 | 3300020199 | Vadose Zone Soil | VLIEDGRAKRENIHVSFHDVPPSNYAEAGILVADQKRTP |
Ga0210395_102969521 | 3300020582 | Soil | ALIEDGRAKRENIQVTFVDLPPTDYAEAGVTVADQKRTP |
Ga0210405_100307335 | 3300021171 | Soil | LALIEDGRAKRENIQVTFVDLPPTDYAEAGVTVADQKRTP |
Ga0210393_103999742 | 3300021401 | Soil | IAAQITQTLETEGRAKRENIHVAFLDVPKTDYAEGGVTVADQKRVP |
Ga0210385_100866563 | 3300021402 | Soil | AVVEDGRAKKENVHVTFVDLPPSDYAEAGVTVEDQRKKN |
Ga0210397_101623071 | 3300021403 | Soil | RITQALFEDGRAKRENIQVTFVDLPPTDYAEAGVTVADQKRTP |
Ga0210389_100249615 | 3300021404 | Soil | DGRAQRENIQVTFVDLPPTDYAEAGVTVADQKRTP |
Ga0210387_107495421 | 3300021405 | Soil | ERITLALIEDGRAKRENIQVTFVDLPPTDYAEAGVTVADQKRTP |
Ga0210383_108799713 | 3300021407 | Soil | RITQVLIEDGKAKRENIQVTFVDLPATDYAEAGVTVADQKRTP |
Ga0210394_105858033 | 3300021420 | Soil | EDGRAKRENIQVTFVDLPPTDYAEAGVTVADQKRTP |
Ga0210391_110693802 | 3300021433 | Soil | TQVLIEDGKAKRENIQVTFVDLPATDYAEAGVTVADQKRTP |
Ga0210398_107396501 | 3300021477 | Soil | EEGRAKKENVHVTFVDLPPSDYAEAGVTVEDQRKKN |
Ga0242669_10539731 | 3300022528 | Soil | QALIEDGRAKRENIQVTFVDLPPTDYAEAGVTVADQKRTP |
Ga0242660_12551311 | 3300022531 | Soil | LIEDGKAKRENIHVSFHDVPATNYAEAGVLVVDQKHTP |
Ga0242662_102989502 | 3300022533 | Soil | VLVEDGKAKRENIHVSFHDVPPTNYAEAGLLVVDQKRTP |
Ga0212128_107119392 | 3300022563 | Thermal Springs | EDGRAKRENCHVAFVDVPPTDYAEAGVTVADQKRSP |
Ga0137417_13444529 | 3300024330 | Vadose Zone Soil | VLIEDGKAKRENIHVSFHDLPSTNYAEAGVLVADQKRTP |
Ga0137417_14483527 | 3300024330 | Vadose Zone Soil | VLIEDGKAKRENIHVSFHDVPSTNYAEAGVLVVDQKRTP |
Ga0209431_103374912 | 3300025313 | Soil | EDGRAKRENVHVAFLDVPATDYAEAGVTVADQKRSP |
Ga0209640_104502383 | 3300025324 | Soil | LVEDGRAQRGNIHVTFVDVPATDYAEAGVTVADQKRSP |
Ga0208691_10096924 | 3300025612 | Peatland | VLIEDGKAKRENIQVTFVDLPATDYAEAGVTVADQKRTP |
Ga0208691_10430013 | 3300025612 | Peatland | IEDGKAKRENIQVTFVDLPATDYAEAGVTVADQKRTP |
Ga0209235_12099712 | 3300026296 | Grasslands Soil | ALEEDGRARRENIHVSFLDVPAANYAEAGVVVADQKRAP |
Ga0209265_12121152 | 3300026308 | Soil | LIEDGKAKRENIHVSFHDVPATHYAEAGVLVADQKRRP |
Ga0209471_11015363 | 3300026318 | Soil | KALEEEGRAKRENIHVAFLDVPATNYAEAGVLVADQKRSP |
Ga0257168_11128772 | 3300026514 | Soil | RSGKAKRENIHVSFHDLPSTNYAEAGVLVADQKRTP |
Ga0209378_11184403 | 3300026528 | Soil | DGRAKQENIHVAFLDLPSVNYAEAGVLVADQKRTP |
Ga0209648_100053942 | 3300026551 | Grasslands Soil | VLIEDGKAKRENIHVSFHDVPSTNYAEAGVLVADQKRTP |
Ga0209648_108266312 | 3300026551 | Grasslands Soil | IEDGKAKRENIHVSFHDLPSTNYAEAGVLVADQKRTP |
Ga0179593_11496792 | 3300026555 | Vadose Zone Soil | VLIEDGKAKREHIHSVVHDVPSTNYAEAGVLVADQKKHA |
Ga0209735_11362522 | 3300027562 | Forest Soil | ALIEDGRAKRENVQVTFVDLPPTDYAEAGVTVADQKRTP |
Ga0209076_10210014 | 3300027643 | Vadose Zone Soil | LEEEGRAKRENIHVAFLDVPATNYAEAGVLVADQKRSP |
Ga0209117_10100751 | 3300027645 | Forest Soil | VLVEDGKAKRENIHVSFHDLPSTNYAEAGVLVADQKRTP |
Ga0209388_10352921 | 3300027655 | Vadose Zone Soil | EDGKAKRENIHVSFHDLPSTNYAEAGVLVVDQKRTP |
Ga0209388_11544762 | 3300027655 | Vadose Zone Soil | VLIEDGKAKRENIHVSFHDVPATNYTEAGVLVVDQKRTP |
Ga0208981_10936052 | 3300027669 | Forest Soil | DGKAKRENTHVSFHDVPSTNYAEAGVLVVDQKRTP |
Ga0209248_101234981 | 3300027729 | Bog Forest Soil | DGRAKREDIQVTFVDLPPTDYAEAGVTVADQKRTP |
Ga0209139_100368574 | 3300027795 | Bog Forest Soil | ITQVLIEDGKAKRENIQVTFVDLPATDYAEAGVTVADQKRTP |
Ga0209773_102553932 | 3300027829 | Bog Forest Soil | AERITLALIEDGRAKRENIQVTFVDLPPTDYAEAGVTVADQKRTP |
Ga0209180_105365862 | 3300027846 | Vadose Zone Soil | EPVTKALEEEGRAKRENIHVAFLDVPATNYAEAGVPVADQKRSP |
Ga0209517_106765572 | 3300027854 | Peatlands Soil | IEEGRAKRENIQVTFVDLPPTDYAEAGVTVADQKRTP |
Ga0209166_103002963 | 3300027857 | Surface Soil | IEDGRAKRENIHVAFHDVPATNYAEAGVLVADQKRTP |
Ga0209701_102354573 | 3300027862 | Vadose Zone Soil | VLIEDGKAKRENIHVSFHDVPSTNYAEAGVLVMDQKRMP |
Ga0209701_102456873 | 3300027862 | Vadose Zone Soil | AVLIEDGRAKRENIHVSFHDVPATDYAEAGVLVVDQKRSP |
Ga0209283_100923614 | 3300027875 | Vadose Zone Soil | LIEDGKAKRENIHVSFHDVPSTNYAEAGVLVVDQKRTP |
Ga0209283_108573201 | 3300027875 | Vadose Zone Soil | GVLMEDGRAKRENIHVAFQDVPATNYAEAGVLVADQKRTP |
Ga0265319_12197771 | 3300028563 | Rhizosphere | VTQALIEDGRAKRENIQVTFVDLPPTDYAEAGVTVADQKRTT |
Ga0222748_11009311 | 3300029701 | Soil | LIEDGRAKRENIQVTFVDLPPTDYAEAGVTVADQKRTQ |
Ga0302275_102694303 | 3300030518 | Bog | ITNALIEDGKAKRENIQVTFVDLPPTDYSEAGVTVEDQRKRA |
Ga0247727_108094671 | 3300031576 | Biofilm | VEEGRAKREHVHVAFLDVPATDYAEAGVTVADQKQSP |
Ga0307477_105418512 | 3300031753 | Hardwood Forest Soil | VTQALVEDGRAKRENIHVAFVDLPPTDYAEAGVTVAEQKRTP |
Ga0307475_113352551 | 3300031754 | Hardwood Forest Soil | ALIEDGRAKRENIQVTFVDLPPTDYAEAGVTVADQKRIP |
Ga0307478_116590792 | 3300031823 | Hardwood Forest Soil | LIEDGRAKRENIQVTFVDLPPTDYAEAGVTVADQKRTP |
Ga0214473_117391271 | 3300031949 | Soil | RVTQALIEDGRAKLENIQVTFHDLPATDYAEAGVMVADQKRTP |
Ga0311301_125964122 | 3300032160 | Peatlands Soil | AERITQALIEDGRAKRENIQVTFVDLPPTDYAEAGVTVADQKRAP |
Ga0307471_1014020243 | 3300032180 | Hardwood Forest Soil | DGKAKRENIHVSFHDVPATNYAEAGVLVVDQKRAP |
Ga0307471_1018642442 | 3300032180 | Hardwood Forest Soil | MEDGRAKRENIHVTFHDLPPASYAEAGVLVVDQKRTP |
Ga0307471_1042086711 | 3300032180 | Hardwood Forest Soil | IEDGRAKRENIHVTFVDLPPTDYAEAGVPVADQKRAP |
Ga0348332_135180812 | 3300032515 | Plant Litter | VLIEDGKAKRENIHVSFHDVPPTNYAEAGVLVVDQKRTP |
Ga0335079_117721431 | 3300032783 | Soil | ERVTDTLIAEGAAKREHIQITFVDLPPTDYAEGGVTVADQKRVK |
Ga0335080_104687433 | 3300032828 | Soil | TLIAEGAAKREHIQITFVDLPPTDYAEGGVTVADQKRVK |
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