Metagenome / Metatranscriptome Family F067238

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F067238
Family Type	Metagenome / Metatranscriptome
Number of Sequences	126
Average Sequence Length	47 residues
Representative Sequence	SSHRKLLSSKAMVVSVAERRDKIPAGTVERGERKRTAAEVSKAD
Number of Associated Samples	111
Number of Associated Scaffolds	126

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	18.55 %
% of genes near scaffold ends (potentially truncated)	70.63 %
% of genes from short scaffolds (< 2000 bps)	86.51 %
Associated GOLD sequencing projects	108
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.18

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (81.746 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil (9.524 % of family members)
Environment Ontology (ENVO)	Unclassified (24.603 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (57.937 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 0.00% Coil/Unstructured: 100.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.18
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.18
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 126 Family Scaffolds
PF00078	RVT_1	13.49
PF08388	GIIM	7.14
PF02566	OsmC	2.38
PF02371	Transposase_20	2.38
PF00202	Aminotran_3	1.59
PF13185	GAF_2	1.59
PF00248	Aldo_ket_red	0.79
PF02733	Dak1	0.79
PF00672	HAMP	0.79
PF01135	PCMT	0.79
PF03721	UDPG_MGDP_dh_N	0.79
PF02735	Ku	0.79
PF13751	DDE_Tnp_1_6	0.79
PF02861	Clp_N	0.79
PF07690	MFS_1	0.79
PF09351	DUF1993	0.79
PF04545	Sigma70_r4	0.79
PF01464	SLT	0.79
PF00144	Beta-lactamase	0.79
PF00589	Phage_integrase	0.79
PF01048	PNP_UDP_1	0.79
PF00211	Guanylate_cyc	0.79
PF01209	Ubie_methyltran	0.79
PF13602	ADH_zinc_N_2	0.79
PF14833	NAD_binding_11	0.79
PF13458	Peripla_BP_6	0.79
PF00497	SBP_bac_3	0.79
PF00891	Methyltransf_2	0.79
PF00106	adh_short	0.79
PF03401	TctC	0.79
PF13408	Zn_ribbon_recom	0.79

COG ID	Name	Functional Category	% Frequency in 126 Family Scaffolds
COG3547	Transposase	Mobilome: prophages, transposons [X]	2.38
COG1764	Organic hydroperoxide reductase OsmC/OhrA	Defense mechanisms [V]	2.38
COG1765	Uncharacterized OsmC-related protein	General function prediction only [R]	2.38
COG2226	Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG	Coenzyme transport and metabolism [H]	1.59
COG1893	Ketopantoate reductase	Coenzyme transport and metabolism [H]	0.79
COG4122	tRNA 5-hydroxyU34 O-methylase TrmR/YrrM	Translation, ribosomal structure and biogenesis [J]	0.79
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.79
COG2820	Uridine phosphorylase	Nucleotide transport and metabolism [F]	0.79
COG2519	tRNA A58 N-methylase Trm61	Translation, ribosomal structure and biogenesis [J]	0.79
COG2518	Protein-L-isoaspartate O-methyltransferase	Posttranslational modification, protein turnover, chaperones [O]	0.79
COG2376	Dihydroxyacetone kinase	Carbohydrate transport and metabolism [G]	0.79
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.79
COG2227	2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase	Coenzyme transport and metabolism [H]	0.79
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.79
COG0240	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	0.79
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.79
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.79
COG1273	Non-homologous end joining protein Ku, dsDNA break repair	Replication, recombination and repair [L]	0.79
COG1250	3-hydroxyacyl-CoA dehydrogenase	Lipid transport and metabolism [I]	0.79
COG1004	UDP-glucose 6-dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	0.79
COG0813	Purine-nucleoside phosphorylase	Nucleotide transport and metabolism [F]	0.79
COG0775	Nucleoside phosphorylase/nucleosidase, includes 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase MtnN and futalosine hydrolase MqnB	Nucleotide transport and metabolism [F]	0.79
COG0677	UDP-N-acetyl-D-mannosaminuronate dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	0.79
COG0542	ATP-dependent Clp protease, ATP-binding subunit ClpA	Posttranslational modification, protein turnover, chaperones [O]	0.79

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	81.75 %
Unclassified	root	N/A	18.25 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	81.75 %
Unclassified	root	N/A	18.25 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	81.75 %
Unclassified	root	N/A	18.25 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	74.60 %
Unclassified	root	N/A	18.25 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	64.29 %
Unclassified	root	N/A	18.25 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	32.54 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	20.63 %
Unclassified	root	N/A	18.25 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	20.63 %
Unclassified	root	N/A	18.25 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	10.32 %
Methylocystaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae	0.79 %
Beijerinckiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	0.79 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.79 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	20.63 %
Unclassified	root	N/A	18.25 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	9.52 %
Methylosinus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylosinus	0.79 %
Methylocapsa	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa	0.79 %
Rhizobium/Agrobacterium group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group	0.79 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	20.63 %
Unclassified	root	N/A	18.25 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	1.59 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1.59 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	0.79 %
Methylocapsa palsarum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → Methylocapsa palsarum	0.79 %
unclassified Methylosinus	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylosinus → unclassified Methylosinus	0.79 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	20.63 %
Unclassified	root	N/A	18.25 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	1.59 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1.59 %
Methylosinus sp. Ce-a6	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylosinus → unclassified Methylosinus → Methylosinus sp. Ce-a6	0.79 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	0.79 %
Methylocapsa palsarum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → Methylocapsa palsarum	0.79 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090014\|GPIPI_17093106	All Organisms → cellular organisms → Bacteria → Proteobacteria	1155	Open in IMG/M
2170459002\|FZY7DQ102JT4B1	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	544	Open in IMG/M
3300000651\|AP72_2010_repI_A10DRAFT_1041636	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	598	Open in IMG/M
3300000705\|JGI12455J11871_104548	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	523	Open in IMG/M
3300000715\|JGI12409J11926_105142	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	519	Open in IMG/M
3300000837\|AP72_2010_repI_A100DRAFT_1007719	Not Available	1522	Open in IMG/M
3300001179\|JGI12660J13575_103630	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	514	Open in IMG/M
3300001407\|JGI20192J14887_1003436	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2265	Open in IMG/M
3300001593\|JGI12635J15846_10371474	All Organisms → cellular organisms → Bacteria → Proteobacteria	871	Open in IMG/M
3300001620\|JGI20266J16349_10422	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	529	Open in IMG/M
3300001622\|JGI20252J16333_100351	Not Available	949	Open in IMG/M
3300001636\|JGI20236J16297_101475	All Organisms → cellular organisms → Bacteria → Proteobacteria	648	Open in IMG/M
3300001641\|JGI20238J16299_100484	Not Available	1203	Open in IMG/M
3300001645\|JGI20270J16353_100458	All Organisms → cellular organisms → Bacteria → Proteobacteria	946	Open in IMG/M
3300002245\|JGIcombinedJ26739_100376664	Not Available	1299	Open in IMG/M
3300003224\|JGI26344J46810_1001841	Not Available	1454	Open in IMG/M
3300004067\|Ga0055485_10024573	Not Available	1203	Open in IMG/M
3300004071\|Ga0055486_10006383	Not Available	1623	Open in IMG/M
3300004465\|Ga0068944_1143903	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	512	Open in IMG/M
3300004468\|Ga0068977_1282928	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	524	Open in IMG/M
3300004471\|Ga0068965_1295548	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	533	Open in IMG/M
3300004618\|Ga0068963_1407803	All Organisms → cellular organisms → Bacteria	698	Open in IMG/M
3300004633\|Ga0066395_10086963	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1477	Open in IMG/M
3300004633\|Ga0066395_10611606	Not Available	639	Open in IMG/M
3300004633\|Ga0066395_10739661	All Organisms → cellular organisms → Bacteria	586	Open in IMG/M
3300005173\|Ga0066822_1003393	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	829	Open in IMG/M
3300005332\|Ga0066388_103403689	All Organisms → cellular organisms → Bacteria → Proteobacteria	812	Open in IMG/M
3300005332\|Ga0066388_104545270	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	706	Open in IMG/M
3300005332\|Ga0066388_104598723	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	702	Open in IMG/M
3300005332\|Ga0066388_106926557	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	570	Open in IMG/M
3300005334\|Ga0068869_100183335	All Organisms → cellular organisms → Bacteria → Proteobacteria	1642	Open in IMG/M
3300005337\|Ga0070682_100171148	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1509	Open in IMG/M
3300005347\|Ga0070668_100497626	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1055	Open in IMG/M
3300005356\|Ga0070674_101824708	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	552	Open in IMG/M
3300005435\|Ga0070714_100325308	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1439	Open in IMG/M
3300005437\|Ga0070710_10441216	All Organisms → cellular organisms → Bacteria	880	Open in IMG/M
3300005439\|Ga0070711_100650523	All Organisms → cellular organisms → Bacteria → Proteobacteria	884	Open in IMG/M
3300005439\|Ga0070711_101203011	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	655	Open in IMG/M
3300005439\|Ga0070711_101327753	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	624	Open in IMG/M
3300005445\|Ga0070708_100888768	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	837	Open in IMG/M
3300005468\|Ga0070707_100662496	All Organisms → cellular organisms → Bacteria	1006	Open in IMG/M
3300005468\|Ga0070707_101095223	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	762	Open in IMG/M
3300005536\|Ga0070697_100964097	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	758	Open in IMG/M
3300005544\|Ga0070686_100019878	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3967	Open in IMG/M
3300005554\|Ga0066661_10151345	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1419	Open in IMG/M
3300005556\|Ga0066707_10469590	All Organisms → cellular organisms → Bacteria	816	Open in IMG/M
3300005561\|Ga0066699_10404702	Not Available	976	Open in IMG/M
3300005602\|Ga0070762_10136123	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1457	Open in IMG/M
3300005713\|Ga0066905_100150212	All Organisms → cellular organisms → Bacteria → Proteobacteria	1676	Open in IMG/M
3300005719\|Ga0068861_100148913	Not Available	1918	Open in IMG/M
3300005764\|Ga0066903_102298125	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1041	Open in IMG/M
3300005980\|Ga0066798_10025509	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1993	Open in IMG/M
3300006028\|Ga0070717_10521088	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1075	Open in IMG/M
3300006041\|Ga0075023_100427845	All Organisms → cellular organisms → Bacteria → Proteobacteria	579	Open in IMG/M
3300006046\|Ga0066652_100157329	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1912	Open in IMG/M
3300006052\|Ga0075029_100157676	Not Available	1398	Open in IMG/M
3300006102\|Ga0075015_100044354	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2080	Open in IMG/M
3300006102\|Ga0075015_100201960	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1059	Open in IMG/M
3300006102\|Ga0075015_100836720	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	555	Open in IMG/M
3300006354\|Ga0075021_10095325	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1763	Open in IMG/M
3300006578\|Ga0074059_12066856	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	682	Open in IMG/M
3300006800\|Ga0066660_11402522	Not Available	547	Open in IMG/M
3300006845\|Ga0075421_101239441	Not Available	829	Open in IMG/M
3300006846\|Ga0075430_100088595	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2590	Open in IMG/M
3300006880\|Ga0075429_100160545	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1968	Open in IMG/M
3300006893\|Ga0073928_11069744	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	547	Open in IMG/M
3300006904\|Ga0075424_102151530	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	587	Open in IMG/M
3300007076\|Ga0075435_101211616	All Organisms → cellular organisms → Bacteria → Proteobacteria	660	Open in IMG/M
3300009518\|Ga0116128_1110142	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	807	Open in IMG/M
3300009525\|Ga0116220_10136851	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1048	Open in IMG/M
3300009631\|Ga0116115_1121937	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	664	Open in IMG/M
3300009808\|Ga0105071_1073144	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	587	Open in IMG/M
3300009817\|Ga0105062_1076146	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylosinus → unclassified Methylosinus → Methylosinus sp. Ce-a6	641	Open in IMG/M
3300010048\|Ga0126373_11632313	Not Available	709	Open in IMG/M
3300010366\|Ga0126379_10555973	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1228	Open in IMG/M
3300010373\|Ga0134128_12062143	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	628	Open in IMG/M
3300012209\|Ga0137379_10249889	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1686	Open in IMG/M
3300012685\|Ga0137397_11100856	All Organisms → cellular organisms → Bacteria	579	Open in IMG/M
3300012929\|Ga0137404_10395046	All Organisms → cellular organisms → Bacteria → Proteobacteria	1218	Open in IMG/M
3300012944\|Ga0137410_10203341	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1535	Open in IMG/M
3300012971\|Ga0126369_12634597	All Organisms → cellular organisms → Bacteria	587	Open in IMG/M
3300014165\|Ga0181523_10077023	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2024	Open in IMG/M
3300015051\|Ga0137414_1192535	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6377	Open in IMG/M
3300016319\|Ga0182033_10395012	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1167	Open in IMG/M
3300016371\|Ga0182034_10160106	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1701	Open in IMG/M
3300016387\|Ga0182040_10047321	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2651	Open in IMG/M
3300016387\|Ga0182040_10825331	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	765	Open in IMG/M
3300016422\|Ga0182039_10513144	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1037	Open in IMG/M
3300017931\|Ga0187877_1104583	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1179	Open in IMG/M
3300017937\|Ga0187809_10092056	Not Available	1009	Open in IMG/M
3300017972\|Ga0187781_10045654	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3015	Open in IMG/M
3300017972\|Ga0187781_10289481	Not Available	1162	Open in IMG/M
3300017975\|Ga0187782_10030880	All Organisms → cellular organisms → Bacteria → Proteobacteria	3893	Open in IMG/M
3300018058\|Ga0187766_10435987	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	872	Open in IMG/M
3300019786\|Ga0182025_1019645	All Organisms → cellular organisms → Bacteria	1092	Open in IMG/M
3300019786\|Ga0182025_1208483	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2272	Open in IMG/M
3300020579\|Ga0210407_10792575	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	731	Open in IMG/M
3300021168\|Ga0210406_11309477	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	521	Open in IMG/M
3300021404\|Ga0210389_11529222	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	507	Open in IMG/M
3300021420\|Ga0210394_11772214	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	515	Open in IMG/M
3300021475\|Ga0210392_10361440	Not Available	1052	Open in IMG/M
3300021476\|Ga0187846_10283118	All Organisms → cellular organisms → Bacteria → Proteobacteria	686	Open in IMG/M
3300021560\|Ga0126371_13427595	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	535	Open in IMG/M
3300022727\|Ga0224567_103908	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	543	Open in IMG/M
3300022731\|Ga0224563_1018814	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	603	Open in IMG/M
3300025905\|Ga0207685_10219618	Not Available	903	Open in IMG/M
3300025916\|Ga0207663_11501374	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	543	Open in IMG/M
3300026920\|Ga0208575_1001622	All Organisms → cellular organisms → Bacteria	2723	Open in IMG/M
3300027063\|Ga0207762_1041923	Not Available	680	Open in IMG/M
3300027842\|Ga0209580_10649720	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	522	Open in IMG/M
3300028536\|Ga0137415_10111222	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2587	Open in IMG/M
3300031719\|Ga0306917_10281227	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1282	Open in IMG/M
3300031724\|Ga0318500_10396425	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	686	Open in IMG/M
3300031771\|Ga0318546_10127527	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1697	Open in IMG/M
3300031879\|Ga0306919_11149957	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → Methylocapsa palsarum	591	Open in IMG/M
3300031912\|Ga0306921_10031754	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5895	Open in IMG/M
3300031912\|Ga0306921_10282410	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1944	Open in IMG/M
3300031941\|Ga0310912_10811633	Not Available	722	Open in IMG/M
3300031942\|Ga0310916_10268522	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1440	Open in IMG/M
3300031945\|Ga0310913_10096585	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1993	Open in IMG/M
3300031954\|Ga0306926_10200086	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2479	Open in IMG/M
3300032076\|Ga0306924_10021815	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	6812	Open in IMG/M
3300032076\|Ga0306924_11164430	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	836	Open in IMG/M
3300032516\|Ga0315273_10358834	Not Available	1970	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	92.86%
Host-Associated	Host-Associated	7.14%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	79.37%
Aquatic	Environmental → Aquatic	13.49%
Plants	Host-Associated → Plants	7.14%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	77.78%
Freshwater	Environmental → Aquatic → Freshwater	6.35%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.56%
Sediment	Environmental → Aquatic → Sediment	4.76%
Marine	Environmental → Aquatic → Marine	1.59%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.59%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.79%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.79%
Cave	Environmental → Terrestrial → Cave	0.79%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	42.06%
Loam	Environmental → Terrestrial → Soil → Loam	28.57%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	5.56%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	5.56%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.76%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.97%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.59%
Sand	Environmental → Terrestrial → Soil → Sand	1.59%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.59%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.59%
Lake	Environmental → Aquatic → Freshwater → Lake	0.79%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.79%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.79%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.79%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	19.05%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	17.46%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	16.67%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	11.11%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.56%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.76%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.97%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	3.17%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.17%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	2.38%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.59%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	1.59%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	1.59%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.59%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.59%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.79%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.79%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.79%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.79%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.79%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.79%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.52%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	9.52%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	8.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	7.94%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	6.35%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	4.76%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.76%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	4.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.76%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.97%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.17%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	3.17%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	1.59%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	1.59%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	1.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.59%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.59%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	1.59%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.59%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	1.59%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.79%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.79%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.79%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.79%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.79%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.79%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.79%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.79%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.79%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.79%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.79%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.79%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.79%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.79%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	0.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.79%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.79%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.79%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
2170459002	Grass soil microbial communities from Rothamsted Park, UK - March 2009 direct MP BIO 1O1 lysis 0-21 cm	Environmental	Open in IMG/M
3300000651	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A10	Environmental	Open in IMG/M
3300000705	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 55	Environmental	Open in IMG/M
3300000715	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 73	Environmental	Open in IMG/M
3300000837	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A100	Environmental	Open in IMG/M
3300001179	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M3	Environmental	Open in IMG/M
3300001407	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210 shallow-092012	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300001620	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF032	Environmental	Open in IMG/M
3300001622	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF018	Environmental	Open in IMG/M
3300001636	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF002	Environmental	Open in IMG/M
3300001641	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF004	Environmental	Open in IMG/M
3300001645	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF036	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300003224	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM3	Environmental	Open in IMG/M
3300004067	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushMan_ThreeSqA_D2	Environmental	Open in IMG/M
3300004071	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushMan_ThreeSqB_D2	Environmental	Open in IMG/M
3300004465	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 32 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004468	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 74 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004471	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 57 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004618	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 55 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005173	Soil and rhizosphere microbial communities from Laval, Canada - mgHMA	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005980	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil leachate replicate DNA2013-203	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006041	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300006578	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009518	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_150	Environmental	Open in IMG/M
3300009525	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG	Environmental	Open in IMG/M
3300009631	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_100	Environmental	Open in IMG/M
3300009808	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N2_40_50	Environmental	Open in IMG/M
3300009817	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_10_20	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300014165	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG	Environmental	Open in IMG/M
3300015051	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017931	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_100	Environmental	Open in IMG/M
3300017937	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4	Environmental	Open in IMG/M
3300017938	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_150	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300019786	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (PacBio error correction)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021476	Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022727	Spruce litter microbial communities from Bohemian Forest, Czech Republic ? CLU3	Environmental	Open in IMG/M
3300022731	Soil microbial communities from Bohemian Forest, Czech Republic ? CSU4	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026920	Forest soil microbial communities from Willamette National Forest, Oregon, USA, amended with Nitrogen - NN397 (SPAdes)	Environmental	Open in IMG/M
3300027063	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 37 (SPAdes)	Environmental	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032516	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_0	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPIPI_00518790	2088090014	Soil	LISSHRKLLSSKAMVVNVAESRDMIPIGKVDRGERKRTAVEVSKAD
E1_02188060	2170459002	Grass Soil	HRKPLRSKAVVASVAETPGQDSGRHGRERRAKRTAAEVSKAV
AP72_2010_repI_A10DRAFT_10416363	3300000651	Forest Soil	QVSSHRKLLSSRAMVVSVAERRDLIPAGEVERGERKRTADDVSKAD*
JGI12455J11871_1045481	3300000705	Tropical Forest Soil	RKPLSSKAMVVNVAETWDMISAGMVERGERKQTAAEASKAD*
JGI12409J11926_1051422	3300000715	Tropical Forest Soil	KPLSSKAMVVNVAERWDMISAGMVERGERKQTAAEASKAD*
AP72_2010_repI_A100DRAFT_10077191	3300000837	Forest Soil	FGDQESIPSHRGLLRPKSVVVSVAETPGAIPAGTVERGERKQTAAEVSKAD*
JGI12660J13575_1036301	3300001179	Forest Soil	KAMVVNVAESRNKISAGMIERGERKRTADDVSKAD*
JGI20192J14887_10034361	3300001407	Arctic Peat Soil	MKEGPEVGNQVLISSHRKLLWSKATVVNVAEKPDKILAGMIERGERKRTAVEVSKAD*
JGI12635J15846_103714741	3300001593	Forest Soil	FGFSNQVLISSHRKLLSLRAMVVALRKNRDLIPAGTVGRGERKQTVDDVSKAV*
JGI20266J16349_104221	3300001620	Forest Soil	RKLLSSKAMVVNVAETRDMIPAGTIERGERKRTVDEVSKSD*
JGI20252J16333_1003512	3300001622	Forest Soil	RKLLLSKAMVVSVAETAGEIPSGKVERGERKQTADDVSKAD*
JGI20236J16297_1014751	3300001636	Forest Soil	SKAMVVSVAETAGMIPSGKVERGERKQTADDVSKSD*
JGI20238J16299_1004842	3300001641	Forest Soil	AMVVSVAETAGEIPSGKVERGERKQTADDVSKAD*
JGI20270J16353_1004582	3300001645	Forest Soil	VQVSSHRELLSSRAMVVSVAERRDMIPAGKVERGERKRTVDEVSKAD*
JGIcombinedJ26739_1003766641	3300002245	Forest Soil	MKEAPEAGSQVLASSHRKLLRTKAAVVSVAERRDKIPAGKVERGERKRTVDEVSKAD*
JGI26344J46810_10018412	3300003224	Bog Forest Soil	IPSHRKPLWSKAVVVSVAERRDQIPAGTVERGERKRTAAEVSKAD*
Ga0055485_100245731	3300004067	Natural And Restored Wetlands	SHRKLLRSKAVVVSVAERRDKIPAGTVERGERKRTAAEVSKAD*
Ga0055486_100063832	3300004071	Natural And Restored Wetlands	SHRKLLRSKAVVVSVAETPGKIPAGTVERGERKRTAAEVSKAD*
Ga0068944_11439032	3300004465	Peatlands Soil	GNQVLISSHRKLLRSKATVVNVAEKRDVIPSGKVEGGERKRTAVEASKAD*
Ga0068977_12829282	3300004468	Peatlands Soil	GNQVLISSHRKLLWSKAMVVSVAETSDEIPAGKVERGERKRTVDEVSKAD*
Ga0068965_12955481	3300004471	Peatlands Soil	GNQVLISSHRKLLWSKATVVNVAEKRDVIPSGKVEGGERKRTAVEASKAD*
Ga0068963_14078031	3300004618	Peatlands Soil	MKEGPGFGSQVLIPSHRKLLRSNAVVVSVADAGTMILAGKVERGERKRTADEVSKAD*
Ga0066395_100869631	3300004633	Tropical Forest Soil	FGFGNQVLIPSHRKLLRLNVVVVSVADAGTMIPAGKVERGERKQTVDEVSKAD*
Ga0066395_106116062	3300004633	Tropical Forest Soil	NQVLISSHRKLLRSRAVVVSVAERRDEIPAGKVERGERKRTAAEVSKAV*
Ga0066395_107396611	3300004633	Tropical Forest Soil	QVLISNHRKLLWSKARVVNVAEKAGQDPAGMVERGERKRTAAEVSKAA*
Ga0066822_10033932	3300005173	Soil	FEVGNQVLISSHRKLLLSKAMVVSVAETAGEIPSGKVERGERKQTADDVSKAD*
Ga0066388_1034036892	3300005332	Tropical Forest Soil	QVLISSHRKLLWSKAPVVNVAEKLGTIPSGMVEGGERKRTAGEVSKAV*
Ga0066388_1045452702	3300005332	Tropical Forest Soil	EIGSQVQVSSHRKLLSSRAMVVSIAERRDLIPAGEVERGDRKRTVDEVSKAD*
Ga0066388_1045987231	3300005332	Tropical Forest Soil	EFGNQVLISSHRKLLRSKAVVVSVAERRDMIPAGMVERGERKQTAAEVSKSD*
Ga0066388_1069265571	3300005332	Tropical Forest Soil	QVLISSHRKLLSSKAMVVNVAETWDMIPAGTVERGERKRTVDELSKAV*
Ga0068869_1001833351	3300005334	Miscanthus Rhizosphere	KLLRSRAVVVSVAAKLGKSPGGKVERGERKQTVDEVSKAD*
Ga0070682_1001711482	3300005337	Corn Rhizosphere	FGNQVLISSHRKLLRSKAVVVSVAETPDEIPAGKVERGERKRTAAEVSKAD*
Ga0070668_1004976261	3300005347	Switchgrass Rhizosphere	ISSHRKLLLSKAMVVSVAETAGEIPSGKVERGERKQTADDVSKAD*
Ga0070674_1018247082	3300005356	Miscanthus Rhizosphere	ISSHRKLLLSKAMVVSVAETAGHDPVGKVERGERKQTADDVSKSD*
Ga0070714_1003253083	3300005435	Agricultural Soil	MKEGPSGFGNQVLISSHCKLLRSKAVVVNVAEKVGTTIPAGMVERGERKRTAAEASKFS*
Ga0070710_104412161	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	ERLWSKATVVSVADVGAMIPAGKIERGERKRTASEASKAD*
Ga0070711_1006505233	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	HRKLLRSKAVVVNVAEKVGTTIPAGMVERGERKRTAAEASKFS*
Ga0070711_1012030111	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MKEDPEFGDQEPISSHRKLLRAKAVVVSVAETPGKISAGTVERGERKRTAAEVSK
Ga0070711_1013277531	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	EFGNQVLISSHRKLLRSNVVVVSVAETPAMIPAGKVERGERKRTVDEVSKAV*
Ga0070708_1008887681	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	VLISSHRKLLSSKAMVVSVAEKSGHPAGKVERGERKRTVDEVLKAD*
Ga0070707_1006624963	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MKEGPEAGSQVQVSSHRELLSSRAMVVSVAERRDLIPAGKVERGERKRTVDEVSKAD*
Ga0070707_1010952234	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	RKLLSSKAMVVNVAEKRDMISAGKVERGERKRTADEVSKAD*
Ga0070697_1009640972	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	SHRKLLSSKAMVVNVAETPGKIPAGEVERGERKQTVDEVSKAD*
Ga0070686_1000198786	3300005544	Switchgrass Rhizosphere	FGNQVLISSHRKLLRSKAVVVSVAETPDEIPAGTVERGERKRTAAEVSKGD*
Ga0066661_101513452	3300005554	Soil	MKEGPEVGNQVLISSRRKLLSSKAMVVNVAEKPDKISAGTVERGERKQTADEVSKAD*
Ga0066707_104695902	3300005556	Soil	MKEGFEVGNQVLISSHRKLLLSKAMVVNVAEKRDKIPTGKVERGERKRTAAEVSKAD*
Ga0066699_104047022	3300005561	Soil	PISSHRKLLWSKAMVVSVAERRDKILAGMVERGERKRTAAEVSKAD*
Ga0070762_101361232	3300005602	Soil	MKEDPEVGNQVLISSHRKLLLSKAMVVSVAETAGEIPSGKVERGERKQTADDVSKAD*
Ga0066905_1001502121	3300005713	Tropical Forest Soil	LRSKAVVVSVAVKLGPKVQDGKVERGERKRTAAEVSKSD*
Ga0068861_1001489132	3300005719	Switchgrass Rhizosphere	SHRKLLRSKAVVVSVAETPDEIPAGKVERGERKRTAAEVSKAD*
Ga0066903_1022981253	3300005764	Tropical Forest Soil	MKEGPLGGNQVLISSHRKLLRLNAVVVSVAETLTMIPAGKVERGERKQTVDEVSKAD*
Ga0066798_100255092	3300005980	Soil	VPISSRRKLLSSKAMVVNVAETRDKIPTGTIERGERKRTAVEVSKSD*
Ga0070717_105210882	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	EFGDQEPISSHRKLLRAKAVVVSVAERRDKISAGTVERGERKRTAAEVSKAD*
Ga0075023_1004278452	3300006041	Watersheds	FGNQVLISSHRKLLSSKATVVNVAERRDMILAGMVERGERKRTAAEASKSD*
Ga0066652_1001573292	3300006046	Soil	ISSHRKLLSSKAMVVSVAETPGQDSGGTVERGERKRTAAEVSKAD*
Ga0075029_1001576761	3300006052	Watersheds	SSHRKLLSSKAMVVSVAERRDKIPAGTVERGERKRTAAEVSKAD*
Ga0075015_1000443543	3300006102	Watersheds	QVLISSHRKLLWSKAVVVSVAETPGKIPAGKVERGERKRTAAEVSKAD*
Ga0075015_1002019603	3300006102	Watersheds	MKEGPGFGSQVLIPSHRKLLRSKAVVVSVADAGTMILAGKVERGERKRTADEVSKAD*
Ga0075015_1008367202	3300006102	Watersheds	VSSHRKLLWSKAMVVSVAENRNEIPAGKIERGERKQTVGEVSKAD*
Ga0075021_100953251	3300006354	Watersheds	RKLLSSKATVVNVAETRDMISAGMVERGERKRTAAEASKSD*
Ga0074059_120668562	3300006578	Soil	EPISSHRKLLWSKAVVVSVAERRDEIPAGTVERGERKRTAAEVSKAD*
Ga0066660_114025221	3300006800	Soil	LLSSRAMVVSVAETRDLIPAGKVERGERKRTANEVSKAD*
Ga0075421_1012394412	3300006845	Populus Rhizosphere	SRCKLLRSKAVVVSVAVKVRTSSPAGEIEGGERKRTAAEASKAD*
Ga0075430_1000885954	3300006846	Populus Rhizosphere	GDQEPISSHRKLLRSKAVVVSIAETPDEIPAGTVERDERKRTAAEVSKSD*
Ga0075429_1001605451	3300006880	Populus Rhizosphere	MKEGPEVGSQVQVSSHRELLSSRAMVVSVAETRDLIPAGKVERGERKRTADDVSKAD*
Ga0073928_110697441	3300006893	Iron-Sulfur Acid Spring	LLWSKAMVVSVAENRNEIPAGKIERGERKQTVGEVSKAD*
Ga0075424_1021515302	3300006904	Populus Rhizosphere	DQEPISSHRKLLRAKAVVVSVAERRDKIPAGTVERGERKRTAAEVSKAD*
Ga0075435_1012116162	3300007076	Populus Rhizosphere	MKEGPSSFGDQEPISSHRKLLRPKAVVVSVAERRDKISAGTVERDERKRTAAEVSKAD*
Ga0116128_11101421	3300009518	Peatland	VLVSSHRKLLWSKATVVSVAENRNEIPAGKIERGERKRTVGEVSKAD*
Ga0116220_101368512	3300009525	Peatlands Soil	VLVSSHRKLLWSKAMVVSVAENRNEIPAGKIERGERKQTVGEVSKSD*
Ga0116115_11219371	3300009631	Peatland	VLVSSHRKLLWSKATAVSVAENRNEIPAGKIERGERKRTVGEVSKAD*
Ga0105071_10731442	3300009808	Groundwater Sand	MLVSVAEKPGQRFPAGTVEKGERKQTADEVSKAD*
Ga0105062_10761462	3300009817	Groundwater Sand	VPIPSHRKLLRSKAVVVSVAENARTMIPAGMVERGERKRTAAEVSKAD*
Ga0126373_116323131	3300010048	Tropical Forest Soil	VPFEAGSEVQVSSHRKLLLLRAMVVRLRKRRDLIPAGKVERSERKQTADEVSKAD*
Ga0126379_105559733	3300010366	Tropical Forest Soil	CKLLRSKAVVVSVAVKLGPKVQDGKVERGERKRTAAEVSKSD*
Ga0134128_120621431	3300010373	Terrestrial Soil	VLISSHRKLLSSKAMVVSVAETLGQDSGTGKVERGERKRTVDE
Ga0136449_1001100791	3300010379	Peatlands Soil	MVVNVAEKVGTMIPAGKIERGERKQTASEASKSD*
Ga0137379_102498891	3300012209	Vadose Zone Soil	VLTLSHHKLLSSKAMVVTLRKRRDKIPAGKVERGERKQTVDEV
Ga0137397_111008561	3300012685	Vadose Zone Soil	LISSHRKLLSSKAMVVNVAESRDMIPIGKVDRGERKRTAVEVSKAD*
Ga0137404_103950462	3300012929	Vadose Zone Soil	MLLSSKAMVVNVAESRDMIPIGKVDRGERKRTAVEVSKAD*
Ga0137410_102033413	3300012944	Vadose Zone Soil	LISSHRKLLSSKAMVVNVAESRDMIPIGKVDSGERKRTAVEVSKAD*
Ga0126369_126345972	3300012971	Tropical Forest Soil	LLSPKATVVNVAEASGIGYRHGMVERGERKRTAAEASKAD*
Ga0181523_100770232	3300014165	Bog	PFEVGNQVLVSSHRKLLWSKATVVSVAENRNEIPAGKIERGERKRTVGEVSKAD*
Ga0137414_11925358	3300015051	Vadose Zone Soil	VLIPSHRKLLSFKSGMVVSVAETPDEIPAGKVERGERKRTVDEVSKAIGRCQTGG*
Ga0182033_103950121	3300016319	Soil	SHRKLLRSKAVVVSVAETSGHDPPAGMVERGKRKRTAAEVSKSD
Ga0182034_101601062	3300016371	Soil	VQVSSHRKLLRAKAVVVSVAETPGPDSAGTVERGERKRTAAEVSKAD
Ga0182040_100473211	3300016387	Soil	NQVLISSHRKLLRSKAVVVSVAETSGHDPPAGMVERGKRKRTAAEVSKSD
Ga0182040_108253311	3300016387	Soil	SKLLLSKATVVSVAERRDRIPAGTVERGERKRTADEVSKRD
Ga0182039_105131441	3300016422	Soil	LLSSKAMVVSVAEKSGRDPVRHGMVERGERKRTTAEVSKSA
Ga0187877_11045832	3300017931	Peatland	VLVSSHRKLLWSKATVVSVAENRNEIPAGKIERGERKRTVGEVSKAD
Ga0187809_100920561	3300017937	Freshwater Sediment	SSHRKLLWSKAMVVSVAENRNEIPAGKIERGERKQTVGEVSKAD
Ga0187854_101812281	3300017938	Peatland	WSKAMVVSVAENRNEIPAGKIERGERKRTVGEVSKAD
Ga0187781_100456543	3300017972	Tropical Peatland	GVGNQVLISSHRKLLRSKAVVVSVAERRDEIPAGKVERGERKRTAAEVSKTD
Ga0187781_102894813	3300017972	Tropical Peatland	VLISSHRKLLWSKAMVVSVAESRDLIPSGKVERGERKRSIDEVS
Ga0187782_100308803	3300017975	Tropical Peatland	VLISSHRKLLRSKAVVVSVAERRDEIPAGKVERGERKRTAAEVSKTD
Ga0187766_104359873	3300018058	Tropical Peatland	ISSHRKLLWSKTTVVNVAESRDMISPGTVERGERKRTAAEASK
Ga0182025_10196452	3300019786	Permafrost	VLVSSHRKLLWSKATVVSVAENRNEIPAGKIVRGERKRTVGEVSKA
Ga0182025_12084831	3300019786	Permafrost	MTLRGRQSVLVSSHRKLLWSKATVVSVAENRNEIPAGKIERGERKRTVGEVSKAD
Ga0210407_107925752	3300020579	Soil	LATCCATTFEVGNQVLISSHCKLLSSKAMVVSVAERREEIPAGTVERGERKQTVDEVSKALR
Ga0210406_113094772	3300021168	Soil	RKLLRAKAVVVSVAETPGQDFGRHGRERRTAAEVSKAD
Ga0210389_115292221	3300021404	Soil	VLISSHRKLLSSKATVVNVAEKSGWIWTGVIEGGERKRTADEVSKGD
Ga0210394_117722141	3300021420	Soil	NQWLISSHCKLLSSKAMVVSVAERREEIPAGTVERGERKQTVDEVSKALR
Ga0210392_103614401	3300021475	Soil	RGRQSGLISSHRKLLSSKAMVVNVAEKVGTGPTGKVERGERKRTAAEVSKSD
Ga0187846_102831182	3300021476	Biofilm	VSSHRKLLSSRAMVVSVAETSDLIPAGKVERGERKRTADEVSKAD
Ga0126371_134275951	3300021560	Tropical Forest Soil	KATVVNVAEASGIGFRHGMVERGERKRTAAEASKAD
Ga0224567_1039081	3300022727	Plant Litter	LVSSHRKLLWSKATVVSVAENRNEIPAGKIERGERKRTVGEVSKAD
Ga0224563_10188141	3300022731	Soil	FEVGNQVLVSSHRKLLWSKATVVSVAENRNEIPAGKIERGERKRTVGEVSKAD
Ga0207685_102196182	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	VLNSSHRKLLSSKAMVVSVAETPGQDSGTGKVERGERKRTVDEVSKAD
Ga0207663_115013741	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	HRKLLRSKAVVVNVAEKVGTTIPAGMVERGERKRTAAEASKFS
Ga0208575_10016225	3300026920	Soil	VLISSHRKLLSSKAMVGALRKRRDEIPAGKVERGERKQTVDEVSKAD
Ga0207762_10419231	3300027063	Tropical Forest Soil	SHRKLLWSKAMVVSVAESWDMIPSGKVERGERKRSIGEVSKAD
Ga0209580_106497202	3300027842	Surface Soil	KLLRPKSVVVSVAERRDKIPAGTVERGERKQTADEVSKAD
Ga0137415_101112222	3300028536	Vadose Zone Soil	VLISSHRKLLWSKATVVNVAEKSEQISVGVIERGERKRTAVEVSKAD
Ga0306917_102812273	3300031719	Soil	VLISSPRKLLSSKATVVNVAEKRDMISTGVVEGGERKRTAAEVSKAD
Ga0318500_103964252	3300031724	Soil	QVLISSHRKLLRSKAVVVSVAETSGHDPPAGMVERGKRKRTAAEVSKSD
Ga0318546_101275271	3300031771	Soil	VLISSYRKLLLSKAMVVNIAKTSGQDSDNERGERKQTAAEVSKAD
Ga0306919_111499571	3300031879	Soil	VLIPSHRKPLRSKAVVVSVADTAGTMILAGTVEKGERKRTADEVSKGD
Ga0306921_100317541	3300031912	Soil	RCKLLSSTAMVVSVAVNVGRISRAGKVERGERKRTVDELSKAV
Ga0306921_102824101	3300031912	Soil	GDQEPISSHRKLLRAKAVVVSVAETPGPDSAGTVERGERKRTAAEVSKAD
Ga0310912_108116332	3300031941	Soil	SHRKLLRSKAVVVSVADQDKILAGKVERGERKRTAAEVSKAD
Ga0310916_102685221	3300031942	Soil	KLLRSKAVVVSVAETSGHDPPAGMVERGKRKRTAAEVSKSD
Ga0310913_100965853	3300031945	Soil	KLLRAKAVVVSVAETPGPDSAGTVERGERKRTAAEVSKAD
Ga0306926_102000861	3300031954	Soil	VQVSSHRELLSSRAMVVSVAETSGLIPAGTVERGERKRTADEVSKAD
Ga0306924_100218151	3300032076	Soil	QEPISSHRKLLRAKAVVVSVAETPGPDSAGTVERGERKRTAAEVSKAD
Ga0306924_111644301	3300032076	Soil	KAVVVSVAVKLGPKVQDGKVERGERKRTAAEVSKSD
Ga0315273_103588343	3300032516	Sediment	KLLLSKATVVNVAENAGPMSPAGMIERGERKRTVDEVSKAFR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F067238

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences