3300001171: Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_M1

Overview

Basic Information

• IMG/M Taxon OID: 3300001171
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0071004 | Gp0055410 | Ga0002904
• Sample Name: Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_M1
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 9372384
• Sequencing Scaffolds: 17
• Novel Protein Genes: 18
• Associated Families: 18

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	5
All Organisms → cellular organisms → Bacteria	4
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Russulales → Russulaceae → Russula	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Magnetospirillum → unclassified Magnetospirillum → Magnetospirillum sp. SS-4	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N3	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium tianshanense	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Forest Soil Microbial Communities From Multiple Locations In Canada And Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): forest biome → land → forest soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Davy Crockett National Forest, Groveton, Texas, USA
• Coordinates
  • Lat. (^o): 31.11
  • Long. (^o): -95.15
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001356	Metagenome / Metatranscriptome	716	Y
F003226	Metagenome / Metatranscriptome	499	Y
F007280	Metagenome / Metatranscriptome	354	Y
F011345	Metagenome / Metatranscriptome	292	Y
F011941	Metagenome / Metatranscriptome	285	Y
F015918	Metagenome / Metatranscriptome	251	Y
F016713	Metagenome / Metatranscriptome	245	Y
F018629	Metagenome / Metatranscriptome	234	Y
F025553	Metagenome / Metatranscriptome	201	Y
F030179	Metagenome / Metatranscriptome	186	Y
F035372	Metagenome	172	Y
F061340	Metagenome / Metatranscriptome	132	Y
F062229	Metagenome / Metatranscriptome	131	Y
F067850	Metagenome / Metatranscriptome	125	Y
F070195	Metagenome / Metatranscriptome	123	Y
F080456	Metagenome / Metatranscriptome	115	Y
F092648	Metagenome / Metatranscriptome	107	Y
F095914	Metagenome	105	N

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI12685J13342_100008	Not Available	2948
JGI12685J13342_100106	All Organisms → cellular organisms → Bacteria	1746
JGI12685J13342_100156	All Organisms → cellular organisms → Bacteria	1577
JGI12685J13342_100181	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Russulales → Russulaceae → Russula	1499
JGI12685J13342_100263	All Organisms → cellular organisms → Bacteria	1338
JGI12685J13342_100370	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1151
JGI12685J13342_100442	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Magnetospirillum → unclassified Magnetospirillum → Magnetospirillum sp. SS-4	1030
JGI12685J13342_100718	All Organisms → cellular organisms → Bacteria	795
JGI12685J13342_100778	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N3	758
JGI12685J13342_100844	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium tianshanense	734
JGI12685J13342_100978	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	678
JGI12685J13342_101417	Not Available	578
JGI12685J13342_101453	Not Available	572
JGI12685J13342_101513	Not Available	564
JGI12685J13342_101661	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	541
JGI12685J13342_101820	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	520
JGI12685J13342_101950	Not Available	506

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI12685J13342_100008	JGI12685J13342_1000083	F067850	VVQLQLLDLMISRECGAVPMDAATRADLIDLMARAIAAVFHEEEEKRK*
JGI12685J13342_100106	JGI12685J13342_1001061	F025553	MKPVSWDKQLGLASPLETAASQSGKIKSPSNKEAGLDVSHHALVSREGRGENFFLDILFYRMSVI
JGI12685J13342_100156	JGI12685J13342_1001563	F018629	MGTDKKTQIRIIKXGMAGSIPESKAVSEERQKKDAMADLICSVSGWVAEFKRRRRPDPRITFQTQFKEA*
JGI12685J13342_100181	JGI12685J13342_1001811	F061340	MNLSRNQISFLRDIPSNIKIDMTSG*RYHYFDGSFIEISNFIKKIGDDKIYLLIPLFRSSKSLSKATLNLSEPFLVDNKSNSTLIIKFILEQ*NSSGFTLKSDTILSYSFKFKRV*LS*
JGI12685J13342_100263	JGI12685J13342_1002632	F030179	LIDTTITAGASRVASGLLCVHAIAITPAGSMELVRSSLSIASGLPRETVRSAPAIVFSGPAQRSLTLWPARSRSRQATLYTESSDSFVASAAVSIATGWSEPVPGRELHPLSPALFTAHYFNNY
JGI12685J13342_100370	JGI12685J13342_1003702	F011345	MRRRFDNQLMLDLVPTKRRLLLGTAPEGLLQALADLLLEALGKQNNGIPAEREACDAPQDHA*
JGI12685J13342_100442	JGI12685J13342_1004421	F070195	MTFPRTLTVIVLNLSPADSDASTGTARPINRSNLQCRPFLPRRLTHLRRIDLDHRSRAQTSRFPLERSNQDPTSS
JGI12685J13342_100718	JGI12685J13342_1007183	F011941	MAESRQNRDAFQIQVSYSFDRLLEPKLARAYEILVPCREHPVGVRVKELDDEDGGNLRKG
JGI12685J13342_100778	JGI12685J13342_1007781	F092648	MCCTPTLRWLIVLTXPPRYRCPLNXLPASRLLPPRSGLERSDFV
JGI12685J13342_100844	JGI12685J13342_1008441	F035372	LEHDDELDAAGFEPSSDLHHFAKARMEPIADVGISRLFVGTM*
JGI12685J13342_100978	JGI12685J13342_1009781	F001356	MAKEQKTKRPGSTARYRRVDVAALDRGRRGKHHELMAGILEELRNAPLGAALEIPLSEVGVGLANLRSAVHRAFSGKGITIETLADDSNFYVWKKDASTK*
JGI12685J13342_101417	JGI12685J13342_1014171	F095914	MSTEAPKGKGEESEPLASRGLTIRSKLLVFTTGIGFLILAALTVTAFFLSAVALRSARLDGFRSLLTSLSQSINTFFADQRRDITAQSELQTIRYAVTELSSGYEHLLEDLDAAGFKADAAFLSQVRQNLQEAYEKGPMADLRALNQPVTGFDEFA
JGI12685J13342_101453	JGI12685J13342_1014531	F015918	ISEVVKDFEQSLENLRPSTRRVYVAGARAAIRAARLELWQSPSATELLASLGKSPTEKRARISPFLDFLGDGEPKELVSDEDSAALQNWVIQRIAKQTRSAKNPSIATRRDSGLIAALCAAPARGTPRKWPENCLKIDGREVLLWDAAIEEPCFALPLRFWHAWRERLARPDQRRLYRKSLRWSQSRLLF
JGI12685J13342_101513	JGI12685J13342_1015131	F080456	MTPILAKVLAVENQAXQYKVIVRIGLAKYRGSFNTLTFGENKPSIGFCHEGRLELVYYKDPGLKAGQRFPLWTIQ*
JGI12685J13342_101661	JGI12685J13342_1016611	F003226	MSQQLYVKTTVCSEYQRLLEESQSAMEIWNEHRSEFCQFRFIRREAGDELLRLQAKYARAYTALQNHERDCSLCQLVSRIEGRDSENSSDTLFDND
JGI12685J13342_101820	JGI12685J13342_1018201	F062229	LLLPGIVALLLFLVFTYLYEQSRQPYFRAWQLGWGAYSLHFGLDAWNIFHEPSAWVYLASSLLIVFMALCLFVSTRLMRERFRVRWYDLVLAIAGVALTVWSLLHHMVHGVFHNEVAVPPHIRLELGTAALLLYCSLRFYLYAHQRSSLAFRMLALALALWGGLMAVGQLVSP
JGI12685J13342_101935	JGI12685J13342_1019353	F007280	GKLDNIGGETLLVLTTARDLALRRAMLPERRTGATLGDMQLRSDLLNAGTATRGA*
JGI12685J13342_101950	JGI12685J13342_1019501	F016713	MKKYLIVVSASFWITAGAALAQQFTTTPRVPPQAGVPRPLVEQNSNSSWFKKFQAAPNKLQLLNPAAPRQYGSGEQVVVADPLDPKQRPRFVRLLSIAF*