Metagenome / Metatranscriptome Family F067850

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F067850
Family Type	Metagenome / Metatranscriptome
Number of Sequences	125
Average Sequence Length	41 residues
Representative Sequence	VVQLQLLDLMIPKECGAVPMDAATRADLIDLMARVLVAVFHEE
Number of Associated Samples	109
Number of Associated Scaffolds	125

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	88.71 %
% of genes near scaffold ends (potentially truncated)	95.20 %
% of genes from short scaffolds (< 2000 bps)	96.80 %
Associated GOLD sequencing projects	104
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.44

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (54.400 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (24.000 % of family members)
Environment Ontology (ENVO)	Unclassified (36.800 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (57.600 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 39.44% β-sheet: 0.00% Coil/Unstructured: 60.56%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.44
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.44
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 125 Family Scaffolds
PF04986	Y2_Tnp	24.00
PF13340	DUF4096	1.60
PF00239	Resolvase	1.60
PF13408	Zn_ribbon_recom	0.80
PF00106	adh_short	0.80
PF13586	DDE_Tnp_1_2	0.80
PF01797	Y1_Tnp	0.80
PF02518	HATPase_c	0.80

COG ID	Name	Functional Category	% Frequency in 125 Family Scaffolds
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	1.60
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	1.60
COG1943	REP element-mobilizing transposase RayT	Mobilome: prophages, transposons [X]	0.80

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	54.40 %
Unclassified	root	N/A	45.60 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	54.40 %
Unclassified	root	N/A	45.60 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	54.40 %
Unclassified	root	N/A	45.60 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.60 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	26.40 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	20.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.60 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	25.60 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	14.40 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.60 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	24.80 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	8.00 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.60 %
Betaproteobacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis	0.80 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.60 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	24.80 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	8.00 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.60 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	0.80 %
Candidatus Accumulibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Candidatus Accumulibacter	0.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.60 %
Edaphobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	24.80 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	8.00 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.60 %
Candidatus Accumulibacter aalborgensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Candidatus Accumulibacter → Candidatus Accumulibacter aalborgensis	0.80 %
Candidatus Solibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	0.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.60 %
Edaphobacter aggregans	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	24.80 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.60 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.80 %
Candidatus Solibacter usitatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	0.80 %
Candidatus Accumulibacter aalborgensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Candidatus Accumulibacter → Candidatus Accumulibacter aalborgensis	0.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.60 %
Edaphobacter aggregans	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	24.80 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.60 %
Bradyrhizobium sp. CCBAU 51753	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCBAU 51753	0.80 %
Candidatus Solibacter usitatus Ellin6076	isolate	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus → Candidatus Solibacter usitatus Ellin6076	0.80 %
Candidatus Accumulibacter aalborgensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Candidatus Accumulibacter → Candidatus Accumulibacter aalborgensis	0.80 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459019\|G14TP7Y01CAVVQ	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	589	Open in IMG/M
3300000793\|AF_2010_repII_A001DRAFT_10132566	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	519	Open in IMG/M
3300000955\|JGI1027J12803_109616225	Not Available	540	Open in IMG/M
3300001171\|JGI12685J13342_100008	Not Available	2948	Open in IMG/M
3300002245\|JGIcombinedJ26739_100706339	Not Available	887	Open in IMG/M
3300004633\|Ga0066395_10603222	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	643	Open in IMG/M
3300005175\|Ga0066673_10777078	Not Available	548	Open in IMG/M
3300005332\|Ga0066388_105231769	All Organisms → cellular organisms → Bacteria	658	Open in IMG/M
3300005363\|Ga0008090_15530998	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	528	Open in IMG/M
3300005468\|Ga0070707_101956791	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	554	Open in IMG/M
3300005561\|Ga0066699_11104388	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	546	Open in IMG/M
3300005598\|Ga0066706_10205543	All Organisms → cellular organisms → Bacteria	1514	Open in IMG/M
3300005602\|Ga0070762_10096351	Not Available	1705	Open in IMG/M
3300005713\|Ga0066905_101803053	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	564	Open in IMG/M
3300005764\|Ga0066903_103729769	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Candidatus Accumulibacter → Candidatus Accumulibacter aalborgensis	819	Open in IMG/M
3300005764\|Ga0066903_105861927	Not Available	645	Open in IMG/M
3300006034\|Ga0066656_10852085	Not Available	583	Open in IMG/M
3300006050\|Ga0075028_100956262	Not Available	530	Open in IMG/M
3300006086\|Ga0075019_10590387	All Organisms → cellular organisms → Bacteria → Proteobacteria	695	Open in IMG/M
3300006237\|Ga0097621_101917372	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	565	Open in IMG/M
3300006797\|Ga0066659_11432822	Not Available	577	Open in IMG/M
3300006881\|Ga0068865_101137545	Not Available	689	Open in IMG/M
3300007258\|Ga0099793_10430691	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	651	Open in IMG/M
3300010043\|Ga0126380_11712071	Not Available	565	Open in IMG/M
3300010047\|Ga0126382_10446969	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1023	Open in IMG/M
3300010047\|Ga0126382_12098772	All Organisms → cellular organisms → Bacteria	541	Open in IMG/M
3300010048\|Ga0126373_10321447	Not Available	1550	Open in IMG/M
3300010048\|Ga0126373_10623229	Not Available	1133	Open in IMG/M
3300010360\|Ga0126372_10530763	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCBAU 51753	1113	Open in IMG/M
3300010376\|Ga0126381_105043195	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	506	Open in IMG/M
3300010398\|Ga0126383_11491617	Not Available	766	Open in IMG/M
3300012948\|Ga0126375_10865891	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	722	Open in IMG/M
3300012986\|Ga0164304_10878541	Not Available	699	Open in IMG/M
3300013297\|Ga0157378_12961268	Not Available	527	Open in IMG/M
3300015374\|Ga0132255_106160096	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	508	Open in IMG/M
3300016270\|Ga0182036_11223400	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	625	Open in IMG/M
3300016319\|Ga0182033_11678987	All Organisms → cellular organisms → Bacteria → Acidobacteria	575	Open in IMG/M
3300016319\|Ga0182033_11733928	Not Available	566	Open in IMG/M
3300016341\|Ga0182035_11624372	Not Available	583	Open in IMG/M
3300016341\|Ga0182035_11625518	Not Available	583	Open in IMG/M
3300016371\|Ga0182034_11689007	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	557	Open in IMG/M
3300016371\|Ga0182034_11711302	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	553	Open in IMG/M
3300016404\|Ga0182037_11338474	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	632	Open in IMG/M
3300016404\|Ga0182037_11498186	Not Available	598	Open in IMG/M
3300016422\|Ga0182039_12078169	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	523	Open in IMG/M
3300017943\|Ga0187819_10064044	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2184	Open in IMG/M
3300017961\|Ga0187778_10427819	All Organisms → cellular organisms → Bacteria	871	Open in IMG/M
3300017970\|Ga0187783_11109558	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	570	Open in IMG/M
3300018062\|Ga0187784_11209806	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	599	Open in IMG/M
3300020580\|Ga0210403_11235822	Not Available	574	Open in IMG/M
3300021407\|Ga0210383_10253493	All Organisms → cellular organisms → Bacteria	1510	Open in IMG/M
3300021477\|Ga0210398_11302403	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	571	Open in IMG/M
3300021560\|Ga0126371_13785853	Not Available	510	Open in IMG/M
3300022711\|Ga0242674_1058984	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	543	Open in IMG/M
3300024176\|Ga0224565_1023356	All Organisms → cellular organisms → Bacteria	680	Open in IMG/M
3300024331\|Ga0247668_1099520	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	589	Open in IMG/M
3300025906\|Ga0207699_11340325	Not Available	529	Open in IMG/M
3300025910\|Ga0207684_11718396	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	505	Open in IMG/M
3300025929\|Ga0207664_11943766	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	511	Open in IMG/M
3300025937\|Ga0207669_11902207	Not Available	508	Open in IMG/M
3300026528\|Ga0209378_1239225	Not Available	577	Open in IMG/M
3300026804\|Ga0207737_114988	Not Available	524	Open in IMG/M
3300026891\|Ga0208889_1010098	Not Available	581	Open in IMG/M
3300026908\|Ga0207787_1014850	Not Available	775	Open in IMG/M
3300027042\|Ga0207766_1006634	Not Available	1407	Open in IMG/M
3300027071\|Ga0209214_1018677	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	881	Open in IMG/M
3300027109\|Ga0208603_1075177	Not Available	500	Open in IMG/M
3300027173\|Ga0208097_1042881	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	526	Open in IMG/M
3300027548\|Ga0209523_1119677	Not Available	544	Open in IMG/M
3300027576\|Ga0209003_1019183	All Organisms → cellular organisms → Bacteria	1098	Open in IMG/M
3300028799\|Ga0307284_10415470	Not Available	548	Open in IMG/M
3300028811\|Ga0307292_10233610	Not Available	761	Open in IMG/M
3300028882\|Ga0302154_10501281	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	577	Open in IMG/M
3300030047\|Ga0302286_10602284	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	559	Open in IMG/M
3300031090\|Ga0265760_10354606	Not Available	525	Open in IMG/M
3300031231\|Ga0170824_127561067	All Organisms → cellular organisms → Bacteria	682	Open in IMG/M
3300031469\|Ga0170819_11957641	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	519	Open in IMG/M
3300031474\|Ga0170818_100382240	Not Available	560	Open in IMG/M
3300031474\|Ga0170818_108190228	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	581	Open in IMG/M
3300031525\|Ga0302326_13655297	Not Available	507	Open in IMG/M
3300031545\|Ga0318541_10867724	Not Available	503	Open in IMG/M
3300031561\|Ga0318528_10671603	All Organisms → cellular organisms → Bacteria → Proteobacteria	555	Open in IMG/M
3300031562\|Ga0310886_10614603	Not Available	669	Open in IMG/M
3300031564\|Ga0318573_10413959	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	724	Open in IMG/M
3300031572\|Ga0318515_10676864	Not Available	546	Open in IMG/M
3300031573\|Ga0310915_10802671	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	662	Open in IMG/M
3300031573\|Ga0310915_10947432	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	602	Open in IMG/M
3300031573\|Ga0310915_11135593	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	542	Open in IMG/M
3300031719\|Ga0306917_10183352	Not Available	1575	Open in IMG/M
3300031719\|Ga0306917_10243548	Not Available	1375	Open in IMG/M
3300031720\|Ga0307469_10478493	Not Available	1085	Open in IMG/M
3300031736\|Ga0318501_10695609	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	560	Open in IMG/M
3300031740\|Ga0307468_100963670	All Organisms → cellular organisms → Bacteria → Proteobacteria	746	Open in IMG/M
3300031747\|Ga0318502_10220446	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1101	Open in IMG/M
3300031754\|Ga0307475_11190734	Not Available	593	Open in IMG/M
3300031778\|Ga0318498_10509582	Not Available	529	Open in IMG/M
3300031797\|Ga0318550_10536891	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	563	Open in IMG/M
3300031833\|Ga0310917_10997125	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	561	Open in IMG/M
3300031835\|Ga0318517_10493823	Not Available	551	Open in IMG/M
3300031845\|Ga0318511_10542671	Not Available	540	Open in IMG/M
3300031859\|Ga0318527_10429443	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	563	Open in IMG/M
3300031860\|Ga0318495_10505057	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	527	Open in IMG/M
3300031879\|Ga0306919_11342853	Not Available	540	Open in IMG/M
3300031890\|Ga0306925_11902435	Not Available	565	Open in IMG/M
3300031893\|Ga0318536_10630076	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	535	Open in IMG/M
3300031910\|Ga0306923_11372327	Not Available	746	Open in IMG/M
3300031910\|Ga0306923_12103230	Not Available	569	Open in IMG/M
3300031912\|Ga0306921_10296479	Not Available	1894	Open in IMG/M
3300031912\|Ga0306921_11169070	All Organisms → cellular organisms → Bacteria → Proteobacteria	858	Open in IMG/M
3300031942\|Ga0310916_11529373	Not Available	543	Open in IMG/M
3300031945\|Ga0310913_11218372	Not Available	523	Open in IMG/M
3300031946\|Ga0310910_11372831	All Organisms → cellular organisms → Bacteria → Proteobacteria	544	Open in IMG/M
3300031962\|Ga0307479_11835526	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	557	Open in IMG/M
3300032001\|Ga0306922_11165001	All Organisms → cellular organisms → Bacteria	786	Open in IMG/M
3300032001\|Ga0306922_11896981	Not Available	584	Open in IMG/M
3300032043\|Ga0318556_10132024	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1282	Open in IMG/M
3300032054\|Ga0318570_10161776	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1004	Open in IMG/M
3300032066\|Ga0318514_10644778	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	563	Open in IMG/M
3300032076\|Ga0306924_12452296	All Organisms → cellular organisms → Bacteria → Proteobacteria	524	Open in IMG/M
3300032828\|Ga0335080_10165578	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus → Candidatus Solibacter usitatus Ellin6076	2444	Open in IMG/M
3300032828\|Ga0335080_10384972	Not Available	1507	Open in IMG/M
3300033158\|Ga0335077_11842673	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	567	Open in IMG/M
3300033289\|Ga0310914_10979879	All Organisms → cellular organisms → Bacteria → Proteobacteria	745	Open in IMG/M
3300033290\|Ga0318519_10788297	Not Available	584	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.20%
Host-Associated	Host-Associated	4.00%
Engineered	Engineered	0.80%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	92.80%
Plants	Host-Associated → Plants	4.00%
Aquatic	Environmental → Aquatic	2.40%
Solid Waste	Engineered → Solid Waste	0.80%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	89.60%
Peat	Environmental → Terrestrial → Peat	2.40%
Sediment	Environmental → Aquatic → Sediment	1.60%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.60%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.60%
Freshwater	Environmental → Aquatic → Freshwater	0.80%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.80%
Roots	Host-Associated → Plants → Roots	0.80%
Grass	Engineered → Solid Waste → Grass	0.80%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	68.00%
Loam	Environmental → Terrestrial → Soil → Loam	16.80%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.80%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	2.40%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.60%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.80%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.80%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.80%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.80%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.80%
Composting	Engineered → Solid Waste → Grass → Composting	0.80%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	48.00%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	13.60%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	12.80%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.80%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.80%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.20%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	2.40%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.60%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.80%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.80%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.80%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.80%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.80%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.80%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.80%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	24.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	16.80%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	8.80%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	6.40%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	5.60%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.80%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	4.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.20%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.20%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.40%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.40%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.40%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.60%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.80%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.80%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.80%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.80%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.80%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.80%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	0.80%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	0.80%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.80%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.80%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.80%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.80%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.80%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.80%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.80%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.80%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459019	Litter degradation MG4	Engineered	Open in IMG/M
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001171	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_M1	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022711	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024176	Spruce litter microbial communities from Bohemian Forest, Czech Republic ? CLU1	Environmental	Open in IMG/M
3300024331	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK09	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026528	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156 (SPAdes)	Environmental	Open in IMG/M
3300026804	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 2 (SPAdes)	Environmental	Open in IMG/M
3300026891	Soil and rhizosphere microbial communities from Laval, Canada - mgLPB (SPAdes)	Environmental	Open in IMG/M
3300026908	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 77 (SPAdes)	Environmental	Open in IMG/M
3300027042	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 68 (SPAdes)	Environmental	Open in IMG/M
3300027071	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027109	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF008 (SPAdes)	Environmental	Open in IMG/M
3300027173	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF036 (SPAdes)	Environmental	Open in IMG/M
3300027548	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027576	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300028799	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123	Environmental	Open in IMG/M
3300028811	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149	Environmental	Open in IMG/M
3300028882	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N2_3	Environmental	Open in IMG/M
3300030047	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_E2_3	Environmental	Open in IMG/M
3300031090	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
4MG_03802610	2170459019	Switchgrass, Maize And Mischanthus Litter	VVQLQLLDLMIPKECGAVPMGAATRADLIDLMARVLVAAFARGGKSQ
AF_2010_repII_A001DRAFT_101325661	3300000793	Forest Soil	VQFQLLDLMIPKECGAVPMDAATRADLIDLMARVLAAVFHEEGR
JGI1027J12803_1096162252	3300000955	Soil	VVVQLQLLDLMIAKEYGAVSMDVATRADLIDLMARVLAV
JGI12685J13342_1000083	3300001171	Forest Soil	VVQLQLLDLMISRECGAVPMDAATRADLIDLMARAIAAVFHEEEEKRK*
JGIcombinedJ26739_1007063391	3300002245	Forest Soil	VVQLQLLDLMISRECSAVPMDAATRAALIDLMARVVVTVLHQEG
Ga0066395_106032221	3300004633	Tropical Forest Soil	VVQLQLRDLMIPKECGAVPMDAATRADLIDLMARVLVAVFSRGGGRSQ*
Ga0066673_107770781	3300005175	Soil	VVQLQLLGLMIPKERGAVPMDAATRAGLIDLMARVLVAVFHEE
Ga0066388_1052317691	3300005332	Tropical Forest Soil	VEAREVAVVQLQLLDLMISRECGAVPMDAATRADLIDLMA
Ga0008090_155309981	3300005363	Tropical Rainforest Soil	MQLQLLDLMVAKQCGAVPMDAAIRADLIDLMARVLVAVFREEGGR
Ga0070707_1019567911	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	LPDAKEVVVLQLQLLDLMIRKETEAVPMDAATRADLIDLMARVL
Ga0066699_111043881	3300005561	Soil	VVQLQFLDLMIPKECGAVPMDAATRADLIDLMARVLVVVFHE
Ga0066706_102055431	3300005598	Soil	VVQLQLLGLMIPKERGAVPMDAATRAGLIDLMARVLVAVF
Ga0070762_100963514	3300005602	Soil	VVQLQLLDLVISRECGAVPMDAATRADLIDLTARVIAAV
Ga0066905_1018030531	3300005713	Tropical Forest Soil	VVQLQFLDLMIPKECGAMPMDAATRADLIDLMARVL
Ga0066903_1037297691	3300005764	Tropical Forest Soil	VVQLQLLDMMIPKECAAPMDAATRADLIDLMARALVAVFH
Ga0066903_1058619272	3300005764	Tropical Forest Soil	VVQLQLLDLVIPKEYAAAPMGAATRANLIDLMARVLV
Ga0066656_108520851	3300006034	Soil	VVQLQLLGLMIPKERGAVPMDAATRAGLIDLMARVLVAVFHEEGG
Ga0075028_1009562621	3300006050	Watersheds	VVQLQLLDLMIPKECGAVPMDAATRADLIDLMARILVAVFH
Ga0075019_105903871	3300006086	Watersheds	VVQLQLLDLMILKECGAAPMDAATRADLIDLMARVLVAVFHEE
Ga0097621_1019173723	3300006237	Miscanthus Rhizosphere	VVQLQFLDLMIPKECDAVPMDAATRADLIDLMARVLVVVFH
Ga0066659_114328221	3300006797	Soil	VVQLQLLDLMISRECGAVPMDAATRADLIDLMARAVAAVFHEEGRR
Ga0068865_1011375451	3300006881	Miscanthus Rhizosphere	VVQLQLLDLMIPNECGAVPMDAATRADLIDLMARVL
Ga0099793_104306912	3300007258	Vadose Zone Soil	LTDAKEVVVVQLQLLDLVIREENEAVPMDAATRADLIDLMARVLVVAFHE*
Ga0126380_117120711	3300010043	Tropical Forest Soil	VVQLQLLDLMIPKECGAVPMDAATRADLIDLMARVLVA
Ga0126382_104469692	3300010047	Tropical Forest Soil	VVQLQLLDLMIPKECGSVPMDAATRADLIDLMARVLVAVFH
Ga0126382_120987722	3300010047	Tropical Forest Soil	VVQLQLLDLMISRECGAVPMDAATRADLIDLMARVI
Ga0126373_103214473	3300010048	Tropical Forest Soil	VVQLQLLGLMIPKECGAVPMEAAARADLIDLMARALIAVF
Ga0126373_106232292	3300010048	Tropical Forest Soil	DSKEVVVVQLQLLDLMIPKECGAVPMDAATRAALGHT*
Ga0126372_105307633	3300010360	Tropical Forest Soil	LADSREVVVVQLQLLDLMIPKECGALPMDAATRADLIDLMARALVA
Ga0126381_1008722671	3300010376	Tropical Forest Soil	LPDIREVVVVQLNFLDLMIRKEGEAVLLDVATRANLIDLMARVLVVV
Ga0126381_1050431951	3300010376	Tropical Forest Soil	MQLQLLDLMIREESEAVLMNAEARAELIDLMACVLAVVFHK
Ga0126383_114916171	3300010398	Tropical Forest Soil	VVQLQLLDLMIPKECGAVPMDAATRADLIDLMARVLVAVFHEE
Ga0126375_108658913	3300012948	Tropical Forest Soil	VVQLQLDLMITKECGAVPMDAATRADLIDLMARVL
Ga0164304_108785411	3300012986	Soil	MQLKFLDLLIRKENEAVPMDAAVRADLIDLMARVLVVIF
Ga0157378_129612681	3300013297	Miscanthus Rhizosphere	VVQLQFLDLMIPKECDAVPMDAATRADLIDLMARVLVVVFHEEG
Ga0132255_1061600961	3300015374	Arabidopsis Rhizosphere	VLADAREVVVVQLELLDLMISRECGAVPMDAATRADLIDLMARAIAAV
Ga0182036_112234002	3300016270	Soil	VVQIQLLDLRMRNENGAVPLDAATRADLIDLMARVLVVVFQAEGGR
Ga0182033_116789871	3300016319	Soil	VVQLQLLGLRIEKESEAVSMDDAAIRSDLIDLMARVLVVVFQAEG
Ga0182033_117339282	3300016319	Soil	VEAREAVVVQLQLLDLMISRECGAVPMDAATRADLIDLTARVIA
Ga0182035_116243723	3300016341	Soil	MQLPLLDPMIAKECGAVPMDAATRADLIDLMARVLVAVFREE
Ga0182035_116255181	3300016341	Soil	VVQLQLLGLRIEKESEAVSMDDAAIRSDLIDLMARVLVVVFQAEGG
Ga0182034_116890072	3300016371	Soil	VAQLQLLDLMISECGAVPMDAATRADLIDLMARALVAVFHEERRR
Ga0182034_117113022	3300016371	Soil	VVQLQLLDLMIRKERDAVSLDAAARVNLIDLMARVVVAVFHEE
Ga0182037_113384742	3300016404	Soil	MQLQFLDLLIAKENGAVPLDAAVRADLIDLMARVLVVVFQE
Ga0182037_114981861	3300016404	Soil	VAQLQLLDLMIPKECGAAPMDAATRADLIDLMARVLVAVF
Ga0182039_120781692	3300016422	Soil	QLLDLMISECGAVPMDAATRADLIDLMARALVAVFHEERRR
Ga0187819_100640445	3300017943	Freshwater Sediment	VVQLQLLDLMIPKECGAVPIDAVTRAHLIDLMARVLVAVFHE
Ga0187778_104278192	3300017961	Tropical Peatland	VVQLQLLDLMIPKECGAVPMDAATRADLIDLMARALVAVFH
Ga0187783_111095583	3300017970	Tropical Peatland	VVQLQLLDLMIQKECGAVPMDAATRADLIDLMARALVAVFHEEGR
Ga0187784_112098062	3300018062	Tropical Peatland	VVQLQLLDLRIRKECRAVPIDATTRADLIDLMARVLM
Ga0210403_112358221	3300020580	Soil	VVQLQLLDLMVRKECDAVSMDAATRADLIDLMARVVVAVFH
Ga0210383_102534931	3300021407	Soil	VVQLRLLDLMVRRERDPVSMDVATRAALIDLMARVVVAVFHGEVGANDRH
Ga0210398_113024031	3300021477	Soil	MVIQLQLLDLMIRKGSGAVSMDAATRADLINLMARVVMAVFHEE
Ga0126371_137858531	3300021560	Tropical Forest Soil	VVQLQLLDLMISRECGAVPMDAATRADLIDLIARVIA
Ga0242674_10589842	3300022711	Soil	VLQLQLQGLMIPKERGAVPIDAATRADVIDLMARILVAVFH
Ga0224565_10233561	3300024176	Plant Litter	VVQLQLLDLMILKECGAAPMDAATRADLIDLMARVL
Ga0247668_10995202	3300024331	Soil	VVQLQLLDLMIRRECDAVSLDAATRVELIGLMARVVVAVFHA
Ga0207699_113403251	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	VVQLQLLDLMIPKECGPVPMDAATRADLIDLMARV
Ga0207684_117183961	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	VVQLQLLDLMISRECGAVPMDAATRADLIDLMARAIAAVFHEEGRR
Ga0207664_119437662	3300025929	Agricultural Soil	VVQLQLLDLMISRECGAVPMDAATRADLIDLIARVIAAVFHEEG
Ga0207669_119022071	3300025937	Miscanthus Rhizosphere	VVQLQLLDLMIPNECGAVPMDAATRADLIDLMARVLGA
Ga0209378_12392251	3300026528	Soil	VVQLQLLDLMISRECGAVPMDAATRADLIDLIARVIAAVF
Ga0207737_1149881	3300026804	Tropical Forest Soil	VVQLQLLDLVISRQCGAVPMDAATRAALIDLMARVLVVVFHE
Ga0208889_10100981	3300026891	Soil	MVQLQLLDLMISRECGAVPMDAATRADLIDLTARVIAAVFHEEG
Ga0207787_10148501	3300026908	Tropical Forest Soil	VVQLQFLDLMIPKECGAVPMDAATRAALIDLMARVLVVVFHE
Ga0207766_10066341	3300027042	Tropical Forest Soil	VVQLQLLDLMISRECGAVPMGAATRADLIDLIARVI
Ga0209214_10186773	3300027071	Forest Soil	VVQLQLLDLMISRECGAVPMDAATRTDLIDLIARVIAVV
Ga0208603_10751772	3300027109	Forest Soil	VVQLQLLDLMIAKECGAVPMDAATRADLIDLMARVL
Ga0208097_10428811	3300027173	Forest Soil	VVQLQLLDLMIAKECGAVPMDAATRADLIDLMARVLVA
Ga0209523_11196771	3300027548	Forest Soil	MQLQLLDLMIPKECGAVPMDAATRIDLIDLMARALVAVFHEEGRR
Ga0209003_10191831	3300027576	Forest Soil	VVQLQLLDLMIPKACGAVPTDAATRTDLIDLMARVLVAVFHEEGGR
Ga0307284_104154701	3300028799	Soil	VVQLQLLDLMIPKECDAVSMDAATRADLINLMARVLVRVFHEEGGS
Ga0307292_102336101	3300028811	Soil	VVQLQLLGLMIPKERGAVPMDAATRAGLIDLMARVLVAVFHEERG
Ga0302154_105012811	3300028882	Bog	VVQLELLDLMIRKGSGAVSMDAATRADLINLMARV
Ga0302286_106022841	3300030047	Fen	VVQLQLLDLMISRECGAVPMDAATRADLIDLTARVIAAVFHEEG
Ga0265760_103546062	3300031090	Soil	VELQLLDLMIPKECGAVPMDAATRAALIDLMARVLVTVFHE
Ga0170824_1275610673	3300031231	Forest Soil	VVQLQLLDLMIPKECGAVPMDAATHADLIDLMARVLAAVFHEEGRR
Ga0170819_119576411	3300031469	Forest Soil	VVQLQLLDLMIPKECGAVPMDAATRADLIDLMARV
Ga0170818_1003822401	3300031474	Forest Soil	VVQLQLLDLMISKECGAVPMDAATRPDLIDLMARVLVAVFH
Ga0170818_1081902282	3300031474	Forest Soil	VVQLQFLDLMIPKECGAVPMDAATRADLIDLMARVLVVVFHEEGG
Ga0302326_136552972	3300031525	Palsa	VVQLQLLDLMISRECGAVPMDAATRADLIDLTARVIAAVFHEEGRR
Ga0318541_108677241	3300031545	Soil	VVQLQLLDLMISRECGAVPLDAATRADLIDLMARVIAEVF
Ga0318528_106716031	3300031561	Soil	VVQLQLLDLMIPKECGAVPIDAATRTDLIDLMARVLVAVFREEGG
Ga0310886_106146031	3300031562	Soil	VVQLQLLDLMIPKECGPVPMDTATRADLIDLMARVLVAVF
Ga0318573_104139592	3300031564	Soil	VVQLQLLDLMISRECGAVPMDAATRADLIDLIARV
Ga0318515_106768641	3300031572	Soil	MQLPLLDPMIAKECGAVPMDAATRADLIDLMARVLVAVFREEGGRAN
Ga0310915_108026711	3300031573	Soil	VVQLQFLDLMIPKECGAVSMDAATRADLIDLMARVLVVV
Ga0310915_109474322	3300031573	Soil	MQLQLLDLLIARENGAVPLDAAVRADLIDLMARVLVV
Ga0310915_111355931	3300031573	Soil	MEVVVVQLQLLDMMIRKERDAVSMDAATRADLIGLMARVVIAV
Ga0306917_101833522	3300031719	Soil	VLADARELVVLQLQLLDLMIPKECGAAPMDAATRADLIDLMARVLVAVFHE
Ga0306917_102435484	3300031719	Soil	VVQLQLLDLMIPKECGGVPMDAATRADLIDLMARVL
Ga0307469_104784932	3300031720	Hardwood Forest Soil	VVQLQLLDLMISRECGAVPKDAATRAELIDLMACAI
Ga0318501_106956093	3300031736	Soil	VVQLQLLDLMIPKECGAVPIDAATRVDLINLMARALV
Ga0307468_1009636701	3300031740	Hardwood Forest Soil	VVQLQLLDLMIPKECGAVAMDAATRADLIDLMARVLVA
Ga0318502_102204463	3300031747	Soil	ARKVVVMQLQLLDLMIPKECGAVPMDAATRANLIDLMARVLGRVVN
Ga0307475_111907341	3300031754	Hardwood Forest Soil	VVQLQLQDLMIPKECGAVPMDAATRADLIDLMARVLVAVFHEE
Ga0318498_105095822	3300031778	Soil	VQLQLLDLMIPKECGAVPMDAAKRADLIDLMARVV
Ga0318550_105368911	3300031797	Soil	VVQLQLLDLMIPKECGVVAIDAATRADLIDLMARVLVAVFREEGG
Ga0310917_109971253	3300031833	Soil	VVQLQLLDLMISRECGAVPMDAATRADLIDLTARVIAAV
Ga0318517_104938231	3300031835	Soil	VVQLQLLDLMISRECGAVPMDAATRADLIDLTARV
Ga0318511_105426712	3300031845	Soil	VVQLQLLGLRIEKESEAVSMDDAAIRSDLIDLMARVLMVVFQKEGERDDDGG
Ga0318527_104294432	3300031859	Soil	VVQLQLLDLMIPKECGVVAIDAATRADLIDLMARVLVAVFREEG
Ga0318495_105050571	3300031860	Soil	VVQLQLLDLMISRECGAAPMDAATRADLIDVMARVVAAVFHE
Ga0306919_113428531	3300031879	Soil	VVQLQLLDLMIRECGAVPMDTATRADLIDLMARALV
Ga0306925_119024351	3300031890	Soil	VVQLQLLDLMISRECGAVPMDAATRADLIDLTARVI
Ga0318536_106300762	3300031893	Soil	VVQLRLLDLMISRECGAVPMDAATRADLIDLMARVI
Ga0306923_113723272	3300031910	Soil	MQLQFLDLLIAKENGAVPLDAAVRADLIDLMARVLVLVF
Ga0306923_121032301	3300031910	Soil	VVQLQLLDLMISRECGAVPMDAATRADLIDLTARVIA
Ga0306921_102964791	3300031912	Soil	VVQLQLLGWRIEKESEAVSMDDAAIRSDLIDLMARVLVVVFQ
Ga0306921_111690701	3300031912	Soil	RKVVVMQLQLLDLMIPKECGAVPMDAATRANLIDLMARVLGRVVN
Ga0310916_115293731	3300031942	Soil	VVQLQLLDLMISECGAVPTDTATRADLIDLMARALVAVFHEERRR
Ga0310913_112183721	3300031945	Soil	VVQLQLLDLMIREECGAVPMDAATRADLIDLIARVI
Ga0310910_113728311	3300031946	Soil	VVQLQFLDLMIPKECGAVSMDAATRADLIDLMARVLVVVFHEEG
Ga0307479_118355263	3300031962	Hardwood Forest Soil	VVQLQLLDLMISRECGAVPMDAATRADLIDLIARVIAAVFNE
Ga0306922_111650011	3300032001	Soil	VVQLHLLGLMIPKECGAVPMDAATRADLIDLMARVLVAVFHEEGGR
Ga0306922_118969811	3300032001	Soil	VVQLQLLDLMIRKESAPVPISAAARGDLIDLMARVLVVVLH
Ga0318556_101320243	3300032043	Soil	VLQLQLLDLMIPKECGAAPMDAATRADLIDLMARVLVAVFH
Ga0318570_101617761	3300032054	Soil	LQLLDLMIPKECGAVPMDAATRANLIDLMARVLGRVVN
Ga0318514_106447782	3300032066	Soil	MQLQLLDLMIPKECGAVPMDAATRANLIDLMARVLVA
Ga0306924_124522962	3300032076	Soil	MQLPLLDPMIAKECGAVPMDAATRADLIDLMARVLVAV
Ga0335080_101655781	3300032828	Soil	MQLEFLDLLIAKENGAVPLDAVVRADLIDLMARVLVVV
Ga0335080_103849724	3300032828	Soil	VVQLQLLDLMISRECGAVPMDAATRADLIDLTARVIATVFHEEGRR
Ga0335077_118426731	3300033158	Soil	VQLQLLDLMIRNESAAMSMDAATRADLIDLMARVLMVVFHEEGGRV
Ga0310914_109798791	3300033289	Soil	VVQLQLLDLMIPKECGAVPVDAATRADLIDLMARVLVV
Ga0318519_107882971	3300033290	Soil	VAQLQLLDLMIPKECGAAPMDAATRADLIDLMARVLVAV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F067850

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences