3300000903: Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_O1

Overview

Basic Information

• IMG/M Taxon OID: 3300000903
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0071004 | Gp0053809 | Ga0002412
• Sample Name: Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_O1
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 15360111
• Sequencing Scaffolds: 14
• Novel Protein Genes: 14
• Associated Families: 12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	1
All Organisms → cellular organisms → Bacteria	2
Not Available	6
All Organisms → cellular organisms → Bacteria → Acidobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Russulales → Russulaceae → Russula → Russula griseocarnosa	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Forest Soil Microbial Communities From Multiple Locations In Canada And Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): forest biome → solid layer → forest soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: El Dorado National Forest, Georgetown, California, USA
• Coordinates
  • Lat. (^o): 38.88
  • Long. (^o): -120.64
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018569	Metagenome / Metatranscriptome	234	Y
F018720	Metagenome / Metatranscriptome	233	Y
F026315	Metagenome / Metatranscriptome	198	Y
F031186	Metagenome / Metatranscriptome	183	Y
F036798	Metagenome / Metatranscriptome	169	Y
F039717	Metagenome / Metatranscriptome	163	Y
F056180	Metagenome / Metatranscriptome	138	Y
F060958	Metagenome / Metatranscriptome	132	Y
F061340	Metagenome / Metatranscriptome	132	Y
F082187	Metagenome / Metatranscriptome	113	Y
F098148	Metagenome / Metatranscriptome	104	N
F104839	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI11872J12872_100127	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	2707
JGI11872J12872_101196	All Organisms → cellular organisms → Bacteria	834
JGI11872J12872_101594	Not Available	719
JGI11872J12872_101689	All Organisms → cellular organisms → Bacteria → Acidobacteria	700
JGI11872J12872_101702	Not Available	698
JGI11872J12872_101773	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	684
JGI11872J12872_101929	All Organisms → cellular organisms → Bacteria	659
JGI11872J12872_101948	Not Available	656
JGI11872J12872_102045	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Russulales → Russulaceae → Russula → Russula griseocarnosa	640
JGI11872J12872_102179	All Organisms → cellular organisms → Bacteria → Terrabacteria group	622
JGI11872J12872_102782	Not Available	561
JGI11872J12872_102927	Not Available	550
JGI11872J12872_103226	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	531
JGI11872J12872_103568	Not Available	513

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI11872J12872_100127	JGI11872J12872_1001271	F082187	VVAVDAGPMQIQWWEGAALSRAETVLQGTTHDTVRAEIGYGEKVSQRLWLKKLEEGIGLTAGHRGAERLEGRRVFELEE*
JGI11872J12872_101196	JGI11872J12872_1011962	F098148	RFGVGLTNVQSRLKQLYGDESSLELTGGNGRGCEAIITIPLRSSREDTSPHRR*
JGI11872J12872_101594	JGI11872J12872_1015941	F036798	MSTRSKDPFTASLLMGVALVTTGALLLRQSVQLPNSVDLVQIWPLFVIVLAFAQMVVTVKERHQQGWGLLLAGDWLLANTMTNWTYVQFSVPVLLAGLGLMSIIGGLRDHSGVLDENHRATE*
JGI11872J12872_101689	JGI11872J12872_1016893	F060958	MSAREIQDQKAIALEMMVQQAAHANADVSASPLPGDTISSIKSRRDCTLASKAEHRFYEPVDTSLLPVTRVDAANLI
JGI11872J12872_101702	JGI11872J12872_1017022	F018720	MTESSSVRVGVVAFVAILTVSAGTMLYLFWRFPLTTAIVTLGVLAVLGVLARLARSIDEMKDLDRTEQSI*
JGI11872J12872_101773	JGI11872J12872_1017731	F104839	MQPLTLNAADVSTWVSRMWWPVLRVGGFVLAAPIASEGVVPG
JGI11872J12872_101929	JGI11872J12872_1019293	F056180	GCRTANEVNGHIIHVRQHQIRQLIDIVRGGPSMTYDPHGKTFAKALRAIARA*
JGI11872J12872_101948	JGI11872J12872_1019481	F061340	KDLDNNIKVDMRSG*RHHYIDASNLIEITSFIRLIGEDKIYLIIPLFCTSQSLSLPTLNLSEPFLVNNNSNSSLIIKFIIDQYKSSGFTIEEHTTIIFAFKFKRV*FSDK*
JGI11872J12872_102045	JGI11872J12872_1020452	F061340	MNLTTNQITFLRDVHSSVKVDMTSG*RHHYFDGSISELSTFIKLIEDDKIYLLIPLFAGSKSLSDATLNLSEPFLVDNKSNTNLIIKFIIDQ*NSSAFEKREGTTLSFSFKFKRV*L
JGI11872J12872_102179	JGI11872J12872_1021792	F018569	MAILDEIGASIKQLAEGAGTSVVGIGQRWGAGSGIVLSEGKVLTNA
JGI11872J12872_102782	JGI11872J12872_1027821	F061340	KLMNLTTNQITFLRDVHSSVKVDMTSG*RYHHFDDFTIQELSSFIRIIGDEKIYLLIPLFASSKSLSDATLNLSEPFLVDNESNPALIIKFILDQ*NSSGFSRKQDCLITFSFKFKRV*LSYK*
JGI11872J12872_102927	JGI11872J12872_1029271	F039717	MNPRIARTLVPRLSSGGLMVLVIILAFSFVAIVLIPGLELASELADTSIALKFAGQQQRNPAVIRASLESMHDRLTNRGYVQESLDQLRDASAKLDAGLRVMNAPRPASWFALSGDTGAKGE
JGI11872J12872_103226	JGI11872J12872_1032261	F031186	EGSQVLSLSCNDSKGTGEPCTLAHTDGTERCYACNEIKLPAKELGADRTARDGHPRAATRATPQPQQ*
JGI11872J12872_103568	JGI11872J12872_1035682	F026315	MTGSDLIVXAPWIIFAICLVVLCARLLRARRSAQR