NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F026315

Metagenome / Metatranscriptome Family F026315

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F026315
Family Type Metagenome / Metatranscriptome
Number of Sequences 198
Average Sequence Length 44 residues
Representative Sequence MTGSDLIVLAPWIIFAVCLVVLCTRLLRARRSAPRSPSARRRHDD
Number of Associated Samples 149
Number of Associated Scaffolds 198

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 87.88 %
% of genes near scaffold ends (potentially truncated) 24.75 %
% of genes from short scaffolds (< 2000 bps) 79.29 %
Associated GOLD sequencing projects 137
AlphaFold2 3D model prediction Yes
3D model pTM-score0.43

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (63.131 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(18.687 % of family members)
Environment Ontology (ENVO) Unclassified
(29.798 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(53.535 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      
Full Alignment
Alignment of all the sequences in the family.
Sorting
Filter
Selection
Vis.elements
Color scheme
Extras
Export
Help

IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.
1AP72_2010_repI_A10DRAFT_10357332
2JGI11872J12872_1035682
3JGI20208J14878_10269572
4JGI12712J15308_101839941
5JGI12053J15887_104660272
6JGI12627J18819_101931672
7JGIcombinedJ26739_1009863922
8JGIcombinedJ26739_1010806971
9JGIcombinedJ26739_1014722292
10rootH2_100220222
11Ga0062389_1048623801
12Ga0070658_100450043
13Ga0070683_1000323438
14Ga0066388_1022176611
15Ga0070680_1000796396
16Ga0070692_101436802
17Ga0070659_1001861373
18Ga0070709_101271402
19Ga0070709_104759172
20Ga0070714_1000336833
21Ga0070714_1000907954
22Ga0070714_1000912084
23Ga0070714_1011921023
24Ga0070714_1012294632
25Ga0070714_1014132352
26Ga0070713_1005108133
27Ga0070681_101535553
28Ga0070679_1005054504
29Ga0070730_110364041
30Ga0070733_109432991
31Ga0070762_103114741
32Ga0070762_106347881
33Ga0070763_103929153
34Ga0070763_107118332
35Ga0070763_109836092
36Ga0068852_1008811562
37Ga0066903_1083371411
38Ga0066789_100475984
39Ga0066790_105146942
40Ga0070765_1009344772
41Ga0070765_1011751842
42Ga0079221_102956042
43Ga0102924_11519542
44Ga0123355_100789783
45Ga0126384_123864762
46Ga0126382_100282745
47Ga0126373_104003592
48Ga0126373_109329222
49Ga0126373_109620612
50Ga0126370_101533831
51Ga0126378_118972722
52Ga0126378_120473712
53Ga0126377_107904832
54Ga0134125_130692242
55Ga0134128_115829512
56Ga0126381_1001579444
57Ga0126381_1002027274
58Ga0126381_1005011962
59Ga0134126_100281248
60Ga0126383_110468502
61Ga0126383_119510591
62Ga0126357_11011721
63Ga0126346_10583581
64Ga0126344_10508142
65Ga0126347_15355871
66Ga0126350_111204512
67Ga0137392_115191122
68Ga0137385_116078311
69Ga0137413_112022412
70Ga0137416_121074831
71Ga0164301_102933261
72Ga0157369_100555902
73Ga0157372_103275063
74Ga0181537_101705813
75Ga0182024_101055943
76Ga0181525_100765604
77Ga0182037_109135951
78Ga0187812_100014113
79Ga0187809_100124313
80Ga0187809_103718151
81Ga0187847_103521972
82Ga0187855_108382802
83Ga0206356_105074403
84Ga0206349_19746413
85Ga0206355_10406073
86Ga0206352_100191502
87Ga0206354_100045343
88Ga0206354_106767592
89Ga0206353_117709953
90Ga0179592_102066651
91Ga0210395_100051896
92Ga0210395_111044892
93Ga0210395_111860972
94Ga0210395_112818181
95Ga0210401_102175513
96Ga0179596_100366394
97Ga0210396_100555593
98Ga0210396_103344272
99Ga0210396_107568652
100Ga0210396_111836172
101Ga0210388_101100023
102Ga0210388_101445912
103Ga0210388_101998871
104Ga0210385_100047396
105Ga0210397_103607273
106Ga0210397_109372162
107Ga0210389_104640081
108Ga0210387_108226122
109Ga0210386_103886101
110Ga0210386_104060332
111Ga0210386_109438912
112Ga0210386_113862562
113Ga0210394_115240171
114Ga0210384_103199261
115Ga0210390_103610913
116Ga0210398_110183671
117Ga0210398_111218992
118Ga0126371_112989042
119Ga0126371_126478272
120Ga0212123_100190893
121Ga0212123_104498812
122Ga0233357_10024223
123Ga0208356_10232322
124Ga0208586_10765682
125Ga0208586_11127412
126Ga0207692_111444781
127Ga0207699_102517593
128Ga0207660_111881881
129Ga0207649_103133951
130Ga0207694_104163702
131Ga0207700_103612081
132Ga0207664_101839181
133Ga0207664_104716343
134Ga0207665_106750812
135Ga0207674_101410375
136Ga0209890_100102533
137Ga0179593_12234883
138Ga0207943_1025223
139Ga0208488_10501933
140Ga0208994_10146822
141Ga0208994_10495132
142Ga0208987_10157492
143Ga0209218_10627921
144Ga0208985_10041035
145Ga0209115_11384582
146Ga0209178_11464542
147Ga0209177_100257252
148Ga0209112_100074116
149Ga0209166_103876772
150Ga0209380_102727981
151Ga0209380_104505432
152Ga0209624_101819442
153Ga0209006_106564542
154Ga0209006_112746102
155Ga0137415_113654161
156Ga0302232_100224623
157Ga0265338_1000091142
158Ga0311339_101029415
159Ga0302181_100070291
160Ga0311372_100491692
161Ga0311372_119411721
162Ga0307482_12206581
163Ga0265753_10251582
164Ga0302314_111764592
165Ga0170824_1071126282
166Ga0318516_101564722
167Ga0318528_107819391
168Ga0318555_103125711
169Ga0310686_1059802233
170Ga0310686_1105229872
171Ga0310686_1173489858
172Ga0310686_1174021852
173Ga0318496_102844612
174Ga0318496_104351322
175Ga0307476_100152725
176Ga0307476_111325942
177Ga0307474_103056831
178Ga0318502_107590552
179Ga0318550_104411992
180Ga0318520_111059592
181Ga0308174_117638032
182Ga0318507_104069312
183Ga0308173_100777083
184Ga0318525_104585321
185Ga0306920_1008245904
186Ga0335085_100269713
187Ga0335069_107640101
188Ga0335074_100209626
189Ga0335074_100583966
190Ga0335075_100205827
191Ga0335075_103031792
192Ga0335071_120467742
193Ga0335073_107775731
194Ga0310811_105577713
195Ga0310811_111678562
196Ga0316214_10032283
197Ga0334850_066039_563_682
198Ga0370492_0221361_368_505
Powered by MSAViewer


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 45.21%    β-sheet: 0.00%    Coil/Unstructured: 54.79%
Feature Viewer
Position :
0
Zoom :
x 1
+ Add Multiple Variants

Enter the variants

Position

Original

Variant

Get Predictions
Get Predictions

Enter the variants

Position

Original

Variant

51015202530354045MTGSDLIVLAPWIIFAVCLVVLCTRLLRARRSAPRSPSARRRHDDExtracel.Cytopl.Sequenceα-helicesβ-strandsCoilSS Conf. scoreTM segmentsTopol. domains
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.43
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Visualization
All Organisms
Unclassified
63.1%36.9%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts

Associated Scaffolds





 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Peatland
Bog Forest Soil
Bog
Freshwater Sediment
Iron-Sulfur Acid Spring
Soil
Vadose Zone Soil
Terrestrial Soil
Tropical Forest Soil
Surface Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Agricultural Soil
Arctic Peat Soil
Soil
Forest Soil
Soil
Hardwood Forest Soil
Soil
Soil
Untreated Peat Soil
Soil
Permafrost
Tropical Forest Soil
Forest Soil
Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Corn Rhizosphere
Agricultural Soil
Soil
Palsa
Termite Gut
Corn Rhizosphere
Roots
Sugarcane Root And Bulk Soil
Corn Rhizosphere
Corn Rhizosphere
Rhizosphere
Corn Rhizosphere
Boreal Forest Soil
4.0%4.0%8.1%3.5%18.7%4.0%9.6%4.5%4.0%4.0%3.0%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts



Associated Samples


Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
AP72_2010_repI_A10DRAFT_103573323300000651Forest SoilMTGSNLIVAAPWIVFGVCLVVLCIRLLRARRPAHRSPSAKRRHDD*
JGI11872J12872_10356823300000903Forest SoilMTGSDLIVXAPWIIFAICLVVLCARLLRARRSAQR
JGI20208J14878_102695723300001449Arctic Peat SoilMTDSFLIVVAPWIIFGVCLIVLCIRLLRGRRRGERSAGLRRRRDD*
JGI12712J15308_1018399413300001471Forest SoilMTDSFLIVVAPWIIFGVCLTVLCIRLLRARRPGERSSGLRRKRDD*
JGI12053J15887_1046602723300001661Forest SoilMTGSDLIVMAPWIIFAICLVVLCARLLRARRSAQRPPSGRREHDR*
JGI12627J18819_1019316723300001867Forest SoilMTGSDLIVLAPWIIFAICLVVLCARLLRARRSAPRPPSGRREHDR*
JGIcombinedJ26739_10098639223300002245Forest SoilMTESFLIVVAPWIIFGVCLTVLCFRLLRARRPGERSPGLRRRRDD*
JGIcombinedJ26739_10108069713300002245Forest SoilMTENFLIVVAPWIIFGVCLVLLCIRLLRARRPGERSPGLRRRDDD*
JGIcombinedJ26739_10147222923300002245Forest SoilMTGSDLIVLAPWIIXAICLXVLCARLLRARRSAPRPPSGRRGHDR*
rootH2_1002202223300003320Sugarcane Root And Bulk SoilMTGSDLIVVAPWIIFAVCLAVLCFRLRHARRSASRRRQDD*
Ga0062389_10486238013300004092Bog Forest SoilMTESFLIVVAPWIVFGVCLAVLCIRLLRARRPGERSPEPRRRHDD*
Ga0070658_1004500433300005327Corn RhizosphereMTGSDLLVVAPWIIFAICVAVVCARLLRARRSASRPPSARRRHDD*
Ga0070683_10003234383300005329Corn RhizosphereMMTGSDLMVFAPWIIFAVCLAVVCTRLLRARWSAKRPPAAKRRESD*
Ga0066388_10221766113300005332Tropical Forest SoilMTGSDLIVVAPWIVFVVCLTVLCVRLLRARRSAQRPPSAKRRHDD*
Ga0070680_10007963963300005336Corn RhizosphereMTGSDLLVVAPWIIFAICVAVVCARLLRARRSASRPPSARRRDDD*
Ga0070692_1014368023300005345Corn, Switchgrass And Miscanthus RhizosphereMTASDLLVVAPWIIFAICVAVVCARLFRARRSASRPPSARRRDDD*
Ga0070659_10018613733300005366Corn RhizosphereMTGSDLLVVAPWIIFAICVAVVCARLFRARRSASRPPSARRRDDD*
Ga0070709_1012714023300005434Corn, Switchgrass And Miscanthus RhizosphereMTGSDLIVAAPWIVFGVSLAILCVGLLRARRSAHRPPSARRRQDD*
Ga0070709_1047591723300005434Corn, Switchgrass And Miscanthus RhizosphereMTGSDLIVFAPWIIFAICLAVVCTRLLRARWSAKRPPSAKRREGN*
Ga0070714_10003368333300005435Agricultural SoilMTGSDLLVVAPWIIFAICVAVVCARLLRARRSASRRTSARRRHDD*
Ga0070714_10009079543300005435Agricultural SoilMTGSDLIVFAPWIIFAICLAVVCTRLLRARWSAKRPPSAKRR
Ga0070714_10009120843300005435Agricultural SoilMTGSDLIVFAPWIIFAVCLVVVCTRLLRARWSAKRPPSAKRRDGN*
Ga0070714_10119210233300005435Agricultural SoilQMTGNDLLVVGPWIIFGVCLAALCIRLLRARRFGQRPPSAHRKDS*
Ga0070714_10122946323300005435Agricultural SoilMTGSDLIVLAPWIIFAVCLVVLCARLIRARRSAHRPPPGRRGHDR*
Ga0070714_10141323523300005435Agricultural SoilMTGSDLIVVAPWIVFGVSLAILCVGLLRARRSAHRPRSARRRQDD*
Ga0070713_10051081333300005436Corn, Switchgrass And Miscanthus RhizosphereMTGSDLLVVAPWIIFAICVAVLCARLLRARRSASRSRSARRRHDD*
Ga0070681_1015355533300005458Corn RhizosphereMTGSDLMVFAPWIIFAVCLAVVCTRLLRARWSAKRPPAAKRRESD*
Ga0070679_10050545043300005530Corn RhizosphereMTGSDLMVFAPWIIFAVCLAVVCTRLLRAHWSAKRPPAAKRRESD*
Ga0070730_1103640413300005537Surface SoilLIWIAPWLVFALCLAVVCTRLFRARRPVKRPPPAGRREGG*
Ga0070733_1094329913300005541Surface SoilMTGSDLIVVAPWIVFGVCLAVLCVGLLRARRSAHRPPSA
Ga0070762_1031147413300005602SoilGLMTGSDLIVVAPWIVFGVCLAVLCVGLLRARRAAHRPPSARRRRDD*
Ga0070762_1063478813300005602SoilGLMTGSDLIVLAPWIIFAICLVVLCARLLRARRSAQRPPPGRRGHDR*
Ga0070763_1039291533300005610SoilMTGSDLIVVAPWIVFGVCLAVLCVGLLRARRSAHRPPSARRRQDD*
Ga0070763_1071183323300005610SoilMTGSDLIVLAPWIIFAVCLVVLCARLLRARRSAQRPPSGRRGHDR*
Ga0070763_1098360923300005610SoilMTGSDLIVLAPWIIFAICLLVLSARLLRARRSASRPPSGEREDDR*
Ga0068852_10088115623300005616Corn RhizosphereMTASDLLVVAPWIIFAICVAVVCARLLRARRSASRPPSARRRHDD*
Ga0066903_10833714113300005764Tropical Forest SoilMTGSDLIVAAPWIVFSVCLAVLCIRLLRARRLGHRSPCAKRRQDD*
Ga0066789_1004759843300005994SoilMTGSDLIVVAPWIIFAVCLTVLCIRLLCARRSAQRSPSARRGQDG*
Ga0066790_1051469423300005995SoilMTGSDLIVVAPWIIFAVCLAVLCIRLLRARRSAQRSSSARRGQDG*
Ga0070765_10093447723300006176SoilMIDSFLLVVAPWIIFGVCLTVLCIRLLRARRPGQRSAGPRRRHDD*
Ga0070765_10117518423300006176SoilMTGSDLIVLAPWIIFAICLLVLSARLLRARRSASRPPSGGREDDR*
Ga0079221_1029560423300006804Agricultural SoilMTASDLLVVAPWIIFAICVAVVCARLFRARRSASRPPSARRRDD
Ga0102924_115195423300007982Iron-Sulfur Acid SpringMTGSDLIVLAPWIIFAICLLVLSARLFRARRSASRPPSGGREDDR*
Ga0123355_1007897833300009826Termite GutMTGSDLIVLAPWVIFAVCLAVVCTRLLRARWSAKRPPSAKRREGH*
Ga0126384_1238647623300010046Tropical Forest SoilMTGSDLIVVAPWIIFAICVAVLCARLFRARRSSRPRSARRRHDD*
Ga0126382_1002827453300010047Tropical Forest SoilMTGSDLIVVAPWIVFSVCLAVLCIRLLRARRLAHRSPSAKRRHDD*
Ga0126373_1040035923300010048Tropical Forest SoilMTASDLIVAAPWIVFSVCLAVLCIRLLRARRSPSAKRRHDD*
Ga0126373_1093292223300010048Tropical Forest SoilMTGSDLIVVAPWIVFGVCLAVLCVGLHRARRSAHRPPSGRRRQDD*
Ga0126373_1096206123300010048Tropical Forest SoilMTGSDLIVVAPWIIFAIWLVVLCIRLLHARRFAQRSPSARRKHHD*
Ga0126370_1015338313300010358Tropical Forest SoilMTGSDLIVAAPWIVFSVCLAVLCIRLLRARRSPSAKRRHDD*
Ga0126378_1189727223300010361Tropical Forest SoilMTGSDLIVVAPWIVFGVCLAVLCVGLHRARRSAQRPPSGRRRQDD*
Ga0126378_1204737123300010361Tropical Forest SoilMTGSDLIVVAPWIAFVICLALLCIRLLRARRSAQRPPSAKRRHDD*
Ga0126377_1079048323300010362Tropical Forest SoilMTGSDLIVVAPWIVFGICLAVLCIRLLRARRPAHRSPSAKRRHDD*
Ga0134125_1306922423300010371Terrestrial SoilMTGSDLIVLAPWIVFGVCLAVLCTRLLRARRSAPRSPSARRRHDD*
Ga0134128_1158295123300010373Terrestrial SoilMTGSDLIVLAPWIVFGVCLAVLCTRLLRARRSAPRAPSARRRHDD*
Ga0126381_10015794443300010376Tropical Forest SoilMTGSDLIVVVPWIVFVICLAVLCIRLLRARRSGQRPPSAKRRHDD*
Ga0126381_10020272743300010376Tropical Forest SoilMTRNDLIVVAPWIVFVVCLAVLCLRLLRARRSAQRPPSAKRRQDD*
Ga0126381_10050119623300010376Tropical Forest SoilMTGSDLIVVAPWIIFAIVLVVLCIRLLRARRFTRRAPSARRKDHD*
Ga0134126_1002812483300010396Terrestrial SoilMTGSDLIVFAPWIIFAVCLAVVCTRLLRARWSAKRPPSAKRREGN*
Ga0126383_1104685023300010398Tropical Forest SoilMTGSDLIVVAPWIVFSVCLAVLCIRLLRARRPAHRSPCAKRRHDD*
Ga0126383_1195105913300010398Tropical Forest SoilMTGSDLIVAAPWIVFGVCLVVLCIRLLRARRPAHRSPSAKRRHDD*
Ga0126357_110117213300010864Boreal Forest SoilMTESFLIVVAPWIIFGVCLVLLFIRLLRARRPGERSPGLRRRDDD*
Ga0126346_105835813300010865Boreal Forest SoilMTGSDLIVLAPWIIFGVCLVVLCTSLFRARRSPSAKRKHED*
Ga0126344_105081423300010866Boreal Forest SoilMTGSDLIVLAPWIIFAICLVVLCARLVRARRSTQRPPSGRRGHDR*
Ga0126347_153558713300010867Boreal Forest SoilMTGSDLIVVAPWIIFAVCLTVLCIRLLRARRSAQRSSSARRGQDG*
Ga0126350_1112045123300010880Boreal Forest SoilMTGSDLIVLAPWIIFAICLVVLCARLVRARRSAQRPPSGRRGHDR*
Ga0137392_1151911223300011269Vadose Zone SoilMTGSDLIVLAPWIIFAICLVVLCARLLRARRSAQRPPPGRRGHDR*
Ga0137385_1160783113300012359Vadose Zone SoilTGSDLIVMAPWIIFAICLVVLGTRLLRARRSASRPPSARRRHDD*
Ga0137413_1120224123300012924Vadose Zone SoilMTGSDLIVLAPWIIFGICVVVLCTRLFRARRSASRSSSARRRHDD*
Ga0137416_1210748313300012927Vadose Zone SoilAGLMTGSDLIVLAPWIIFAICLVVLCARLLRARRSAQRPPPDRRGHDR*
Ga0164301_1029332613300012960SoilTTERQHRTGTMTGSDLMVFAPWIIFAVCLAVVCTRLLRARWSAKRPPAAKRRESD*
Ga0157369_1005559023300013105Corn RhizosphereMTGSDLLVVGPWIIFGVCLAALCIRLLRARRTGQRPPSAQRKDS*
Ga0157372_1032750633300013307Corn RhizosphereMTGSDLLVVAPWIIFAICVAVLCARLLRARRSASRPPSARRRHDD*
Ga0181537_1017058133300014201BogMTGSDLIVLAPWIIFAVCLLVLCTRLLRARRPAPRSPSAKRKHDD*
Ga0182024_1010559433300014501PermafrostMTGSDLIVVAPWIIFAVCLAVLCIRLLCARRSAQRSPSARRGQDG*
Ga0181525_1007656043300014654BogMTGSDLIVLAPWIIFAVCLLVLCTRLLRARRSAPRSPSAKRKHDD*
Ga0182037_1091359513300016404SoilMTGSDLIVVVPWIVFSVCLAVLCIRLIRARRPAHRSPCAKRRDDG
Ga0187812_1000141133300017821Freshwater SedimentMTGSDLIVVTPWVIFGVCLAVLCVRLIRARRSAQRPPSARQDHDE
Ga0187809_1001243133300017937Freshwater SedimentMTGSDLIVVAPWIVFGVCLAVLCVGLLRARRSAHRPPSARRRQDD
Ga0187809_1037181513300017937Freshwater SedimentMTGSDLIVLAPWIIFGVCLAVLCTRLLRARRSAPRSPSARRRHDD
Ga0187847_1035219723300017948PeatlandMTGSDLIVAVPWIVFAICLVVLCASLIRGRRSGRR
Ga0187855_1083828023300018038PeatlandMNGSDLIVAAPWIVFAVCLAVLCICLLRARRSAKRPPSARR
Ga0206356_1050744033300020070Corn, Switchgrass And Miscanthus RhizosphereMTGSDLIVVAPWIIFAICVAVLCARLLRARRSASRPRSARRRH
Ga0206349_197464133300020075Corn, Switchgrass And Miscanthus RhizosphereMMTGSDLMVFAPWIIFAVCLAVVCTRLLRARWSAKRPPAAKRRESD
Ga0206355_104060733300020076Corn, Switchgrass And Miscanthus RhizosphereMTGSDLMVFAPWIIFAVCLAVVCTRLLRARWSAKRPPAAKRRESD
Ga0206352_1001915023300020078Corn, Switchgrass And Miscanthus RhizospherePLAPQHKAGTMTGSDLLVVAPWIIFAICVAVVCARLLRARRSASRPPSARRRHDD
Ga0206354_1000453433300020081Corn, Switchgrass And Miscanthus RhizosphereMVFAPWIIFAVCLAVVCTRLLRARWSAKRPPAAKRRESD
Ga0206354_1067675923300020081Corn, Switchgrass And Miscanthus RhizosphereMTGSDLLVVAPWIIFAICVAVVCARLFRARRSASRPPSARRRHDD
Ga0206353_1177099533300020082Corn, Switchgrass And Miscanthus RhizosphereMTGSDLLVVAPWIIFAICVAVVCARLLRARRSASRPPSARRRHDD
Ga0179592_1020666513300020199Vadose Zone SoilMTGSDLIVLAPWIIFAICLVVLCARLLRARRSAQRPPPGRRGHDR
Ga0210395_1000518963300020582SoilMTGSDLIVVAPWVIFGVCLAVLCVRLIRARRSAQRPPPARQDHDD
Ga0210395_1110448923300020582SoilLAPWIIFAVCLLVLCTRLLRDRRSDRRPPGARGPHDD
Ga0210395_1118609723300020582SoilMNGSDLIVLAPWIIFAVCLVVLCARLLRARRSAPRPPSGRRRHDR
Ga0210395_1128181813300020582SoilSDLIVLAPWIIFAVCLVVLCARLLRARRSAQRPPPGRRRHDR
Ga0210401_1021755133300020583SoilMTGSDLIVLAPWIIFAVCLVVLCARLLRARRSAQRPPPGRRRHDR
Ga0179596_1003663943300021086Vadose Zone SoilMTGSDLIILAPWIIFAICVAVLCTRLLRARRSASRSP
Ga0210396_1005555933300021180SoilMNGSDLIVLAPWIIFAVCLAVLCTRLLRARRSASRSRSAKRKHDD
Ga0210396_1033442723300021180SoilMTGSDLIVLAPWIIFAICLVVLCTSLLRARRSASRRPSAKRRHDDKTLR
Ga0210396_1075686523300021180SoilMIDSFLLVVAPWIIFGVCLILLCIRLLCARRTGDRSPELRRSR
Ga0210396_1118361723300021180SoilMNGSDLIVLAPWIIFAICLVVLCARLLRARRSAPRPPSGRRRHDR
Ga0210388_1011000233300021181SoilMTGSDLIVLAPWIIFAVCLVVLCASLFRARRSAPRSPSARRRHDD
Ga0210388_1014459123300021181SoilMTGSDLIVLAPWIIFAVCLVVLCARLLRARRSAPRPPSGRRGHDR
Ga0210388_1019988713300021181SoilMTGSDLIVLAPWIIFAICLLVLSARLLRARRSASRPPPGRREDDR
Ga0210385_1000473963300021402SoilMTGSDLMVLAPWIIFAVCLLVLCTRLLRDRRSDRRPPGARGPHDD
Ga0210397_1036072733300021403SoilMTGSDLIVIAPWIIFAIWLVVLCVRLLRARRFARQAPSARRRNHD
Ga0210397_1093721623300021403SoilMTGSDLIVLAPWIIFAICLVVLCARLLRARRSAPRPPSGRRGHDR
Ga0210389_1046400813300021404SoilMNGSDLIVLTPWIIFAVCLAVLCARLLRARRSASRSSSAKRKHDDNSA
Ga0210387_1082261223300021405SoilMTENFLIVVAPWIIFGVCLVLLCIRLLRARRPGERSPGLRRRDDD
Ga0210386_1038861013300021406SoilGSDLIVVVPWIIFAVCLVVLCVSLIRARRSAPRSPSARRRHRD
Ga0210386_1040603323300021406SoilMTGSDLIVLAPWIIFAICLVVLCARLLRARRSAPRPPSRRRGHDR
Ga0210386_1094389123300021406SoilMTGSDLIVLAPWIIFAICLVVLCTRLLRARRPAPRSRSARRRRDD
Ga0210386_1138625623300021406SoilMTGSDLIVLAPWIIFAMCLLVLCTRLLLARRSAPRPRSARRRHGD
Ga0210394_1152401713300021420SoilMTDSFLLVVAPWIIFGVCLILLCIRLLCARRTGDRSPEPRR
Ga0210384_1031992613300021432SoilMTGSDLIVMAPWLIFAIWLVVLCIRLLRARRFARRAPSARRRNHD
Ga0210390_1036109133300021474SoilAGLMTGSDLIVLAPWIIFAICLLVLCTRLLRARRSAPRSPSAKRKHDD
Ga0210398_1101836713300021477SoilLIVLAPWLIFAVCLAVLCTRLLRARRSAPRSPSARRKHD
Ga0210398_1112189923300021477SoilMTGSDLIVLAPWIIFAICLLVLCTRLLRARRSAPRSPSAKRKHDD
Ga0126371_1129890423300021560Tropical Forest SoilMTGSDLIVVAPWIIFAIWLVVLCIRLLHARRFAQRSPSARRKHHD
Ga0126371_1264782723300021560Tropical Forest SoilMTGSDLIVVAPWIIFAILLVVLCIRLLRARRFTRRAESARRK
Ga0212123_1001908933300022557Iron-Sulfur Acid SpringMTGSDLIVLAPWIVFGVCLVVLCACLFRARRSAPRPPSRRRGHDR
Ga0212123_1044988123300022557Iron-Sulfur Acid SpringMTGSDLIVLAPWIIFAICLLVLSARLFRARRSASRPPSGGREDDR
Ga0233357_100242233300023056SoilMTGSDLIVLAPWIIFAICLVVLCARLLRARRSAQRPPPDRRGHDR
Ga0208356_102323223300025504Arctic Peat SoilMTDSFLIVVAPWIIFGVCLIVLCIRLLRGRRRGERSAGLRRRRDD
Ga0208586_107656823300025588Arctic Peat SoilMTESFLIVVAPWIIFGVCLTVLCIRLLRARRPGERSPGLRRRRDD
Ga0208586_111274123300025588Arctic Peat SoilMTRSDLIVVAPWIIFAVCLAVLCIRLLRARRSAQRSSSARRGQDG
Ga0207692_1114447813300025898Corn, Switchgrass And Miscanthus RhizosphereGDLIVFAPWIIFAVCLVVVCTRLLRARWSAKRPPSAKRRDGN
Ga0207699_1025175933300025906Corn, Switchgrass And Miscanthus RhizosphereMTGSDLIVFAPWIIFAICLAVVCTRLLRARWSAKRPPSAKRREGN
Ga0207660_1118818813300025917Corn RhizosphereMTGSDLMVFAPWIIFAVCLAVVCTRLLRARWSAKRPPAAK
Ga0207649_1031339513300025920Corn RhizosphereMTASDLLVVAPWIIFAICVAVVCARLLRARRSASRPPSARRRDDD
Ga0207694_1041637023300025924Corn RhizosphereMTGSDLLVVAPWIIFAICVAVVCARLFRARRSASRPPSARRRDDD
Ga0207700_1036120813300025928Corn, Switchgrass And Miscanthus RhizosphereIVFAPWIIFAICLAVVCTRLLRARWSAKRPPSAKRREGN
Ga0207664_1018391813300025929Agricultural SoilMTGSDLIVFAPWIIFAVCLVVVCTRLLRARWSAKRPPSAKRRDGN
Ga0207664_1047163433300025929Agricultural SoilMTGSDLIVVAPWIVFGVSLAILCVGLLRARRSAHRPRSARRRQDD
Ga0207665_1067508123300025939Corn, Switchgrass And Miscanthus RhizosphereMTGSDLIVFAPWIIFAICLAVVCTRLLRARWSAKRPPSAKRRDGN
Ga0207674_1014103753300026116Corn RhizosphereMTASDLLVVAPWIIFAICVAVVCARLLRARRSASRPPSARRRHDD
Ga0209890_1001025333300026291SoilMTGSDLIVVAPWIIFAVCLTVLCIRLLCARRSAQRSPSARRGQDG
Ga0179593_122348833300026555Vadose Zone SoilMTGSDLIVLAPWIIFAICLLVLSARLLRARRSASRPPSGRREDDR
Ga0207943_10252233300027089Forest SoilMTDSFLLVVAPWIIFGVCLILLCIRLLCARRAGDRSPELRRSPD
Ga0208488_105019333300027110Forest SoilKAGLMTGSDLIVLAPWIIFAICLLVLCTRLLRARRSAPRSPSAKRKHDD
Ga0208994_101468223300027164Forest SoilMTGSDLIVMAPWIIFAICLVVLCARLLRARRSAQRPPSGRREHDR
Ga0208994_104951323300027164Forest SoilMTESFLIVVAPWIIFGVCLAVLCVRLLRARRPGERSPGLRRRDDD
Ga0208987_101574923300027496Forest SoilMNGSDLIVLAPWIIFAICLVVLCARLLRARRSAPRPPSGRREHDR
Ga0209218_106279213300027505Forest SoilMTDSFLLVVAPWIIFGVCLILLCIRLLCARRTGDRSPEPPRRRDDEP
Ga0208985_100410353300027528Forest SoilMTGSDLIVLAPWIIFAVCLVVVCTRLLRARWSAKRPPSANRREGD
Ga0209115_113845823300027567Forest SoilMTENFLIVVAPWIIFGVCLVLLCIRLLCARRPGERSPGLRRRDDD
Ga0209178_114645423300027725Agricultural SoilMTASDLLVVAPWIIFAICVAVVCARLFRARRSASRPP
Ga0209177_1002572523300027775Agricultural SoilMTASDLLVVAPWIIFAICVAVVCARLFRARRSASRPPSARRRDDD
Ga0209112_1000741163300027817Forest SoilMTGSDLIVLAPWIIFAVCLVVLCTRLLRARRPAPRSRSVRRRRDD
Ga0209166_1038767723300027857Surface SoilMTESFLIVVAPWIIFGVCLTAVCILLLRARRPGERSPGLRRRRDD
Ga0209380_1027279813300027889SoilMTGSDLIVLAPWIIFAICLLVLCTRLLRARRSAPRSPS
Ga0209380_1045054323300027889SoilMTGSDLIVLAPWIIFAICLVVLCARLIRARRSASRPPSGRRGHDR
Ga0209624_1018194423300027895Forest SoilMTGSDLIVLAPWIIFAICLLVLCARLLRARRSAPRPPSGRRGHDR
Ga0209006_1065645423300027908Forest SoilMTGSDLIVVVPWIIFAVCLVVLCVSLIRARRSAPRSPSARRRHHD
Ga0209006_1127461023300027908Forest SoilMTDSFLIVVAPWIIFGVCLTVLCIRLLRARRPGERSSGLRRKRDD
Ga0137415_1136541613300028536Vadose Zone SoilLIVMAPWIIFAICLVVLCARLLRARRSAQRPPPGRRGHDR
Ga0302232_1002246233300028789PalsaMTTSFLIVAAPWIIFGVCLTVLCLRLLRARRPGDRSPGLRRRRDD
Ga0265338_10000911423300028800RhizosphereMTGSDLILVAPWIIFAVCLAVLCARLLRARRTARGRPARRRR
Ga0311339_1010294153300029999PalsaMTGSDLMVVAPWIIFAVCLTALCIRLLRARRSAQRSSSARRGKTANPS
Ga0302181_1000702913300030056PalsaMNGSDLIVAAPWIVFAVCLAVLYICLLRARRSARRRPSARREKDR
Ga0311372_1004916923300030520PalsaMTGSDLIVLAPWIIFAVCLVVLCASLFRARRPAPRSKPARRRRR
Ga0311372_1194117213300030520PalsaMTDSFLIVVAPWIIFGVCLTVLCIRLLRARRSGERSAGP
Ga0307482_122065813300030730Hardwood Forest SoilRSIRQGLMTGSDLIVVAPWIVFGVCLAVLCVGLLRARRSAHRPRSARRRQDD
Ga0265753_102515823300030862SoilMTGSDLIVVAPWIVFGVCLAVLCVGLLRARRSAHRPPSAR
Ga0302314_1117645923300030906PalsaMTASFLIVVAPWIIFGVCLALLCIRLLRARRPGKRSSALRRRDDD
Ga0170824_10711262823300031231Forest SoilMTGSDLIVVAPWIIFAVCLVVLCVSLIRARRSAPRSRSAKRRHDD
Ga0318516_1015647223300031543SoilMTGSDLIVVVPWIVFSVCLAVLCIRLIRARRPAHRSPCAKRRDDD
Ga0318528_1078193913300031561SoilMTGSDLIVVVPWIVFSVCLAVLCIRLIRARRPAHRSPCA
Ga0318555_1031257113300031640SoilMTGSDLIVVVPWIVFSVCLAVLCIRLIRARRPAHR
Ga0310686_10598022333300031708SoilMNGSDLIVLAPWIIFAICLVVLCARLLRARRSAPRPPSGRRGHDR
Ga0310686_11052298723300031708SoilMTDSFLIVVAPWIIFGVCLTVLCIRLLRARRSGERSAGPRRRRGD
Ga0310686_11734898583300031708SoilMTGSDLMVLAPWIIFAVCLVVLCVSLLCARRSGRR
Ga0310686_11740218523300031708SoilMTGSDLIVVVPWIIFAVCLVVLCVSLVRARRSAPRSPSAKRRHHD
Ga0318496_1028446123300031713SoilMTGSDLIVVAPWIVFSVCLAVLCIRLIRARRPAHRSPCAKRRDDD
Ga0318496_1043513223300031713SoilMTGSDLIVLAPWIVFAVCLVVLCARLLRARRSAQRPPSGRRGHDR
Ga0307476_1001527253300031715Hardwood Forest SoilMTGSDLIVVAPWIVFGVCLAVLCVGLLRARRSAHRPRSARRRQDD
Ga0307476_1113259423300031715Hardwood Forest SoilMTESFLIVVVPWIIFGVCLTVLCIRLLRARRPGQRSAGLRRRHDD
Ga0307474_1030568313300031718Hardwood Forest SoilIVVAPWIILAVCLVVLCFRLRHSRRPRPRSPFVRRRDDD
Ga0318502_1075905523300031747SoilMTGSDLIVVAPWIIFAVWLVVLCIRLLRARRFAQRSPSARRRHHD
Ga0318550_1044119923300031797SoilMTGSDLIVVAPWIIFGVCLAVLCIRLLRARRPAHRSP
Ga0318520_1110595923300031897SoilMTGSDLIVVVPWIVFSVCLAVICIRLIRARRPAHRSPCAKRRDDD
Ga0308174_1176380323300031939SoilMTGSDLIVFAPWIIFAVCLAVVCTRLLRARWSAKRPPPAKRREGN
Ga0318507_1040693123300032025SoilMTGSDLIVVVPWIVFGVCLVVLCIRLLRARRSPHRSPCAKRRHDD
Ga0308173_1007770833300032074SoilMTGSDLIVFAPWIIFAVCLAVVCTRLLRARWSAKRPPSAKRREGNLGR
Ga0318525_1045853213300032089SoilAGLMTGSDLIVVAPWIVFGVCLAVLCVGLHRARRSAQRPPSARRRQDD
Ga0306920_10082459043300032261SoilQGRMTGSDLIVVAPWIIFGVCLAVLCIRLLRARRPAQRSPSARRRQDD
Ga0335085_1002697133300032770SoilMTGSDLIVVAPWIVFGVCLAVLCVGLLRARRAAHRPPSARRRQDD
Ga0335069_1076401013300032893SoilGSDLMVAAPWIVFAVCLAVLGIRLLRARRPARRSPAARRRHDGQTPG
Ga0335074_1002096263300032895SoilMVAAPWIIFGVSLAVLCIRLLRARRPAPRSPSARRRHDD
Ga0335074_1005839663300032895SoilMTGSDLIVVAPWIVFGVCLAVLCVGLLRARRSAHRPPSVRRRHDD
Ga0335075_1002058273300032896SoilMTGSDLIVMAPWIIFAVCLVVLCARLLRARRSARRPPSGRREHDR
Ga0335075_1030317923300032896SoilMTESILLVVAPWIIFGVCLGLLCIRLLRARRPGARSPGLRRRHDD
Ga0335071_1204677423300032897SoilMTGSDLIVLAPWIIFAVCLVVLCTRLLRARRSAPRSPSARRRHDD
Ga0335073_1077757313300033134SoilMTGSDLIVVAPWIVFGVCLAVLCVGLLRARRSAHRPPSARRR
Ga0310811_1055777133300033475SoilMTGSDLIVFAPWIIFAVCLAVVCTRLLRARWSAKRPPSAKRREGN
Ga0310811_1116785623300033475SoilMTGSDLIVVAPWIIFAICVAVLCARLFRARRSASRSRSARRRHDD
Ga0316214_100322833300033545RootsMTGSDLIVLAPWIIFAICLLVLCTRLLRARRPAPRSPSAKRKHDD
Ga0334850_066039_563_6823300033828SoilMTTSFLIVAAPWIIFGVCLTVLCLRLLRARRPGDRSPGLR
Ga0370492_0221361_368_5053300034282Untreated Peat SoilMAGSDLMVVAPWIIFAVCLAVLCIRLLSARRSAQRSSSARRRQDG


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.