Sample 3300000715

Overview

Basic Information
IMG/M Taxon OID	3300000715 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0075432 \| Gp0054650 \| Ga0001996
Sample Name	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 73
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	12462193
Sequencing Scaffolds	14
Novel Protein Genes	15
Associated Families	14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2
Not Available	4
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	forest biome → tropical forest → forest soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Luquillo Experimental Forest Soil, Puerto Rico
Coordinates	Lat. (^o)	18.0	Long. (^o)	-65.0	Alt. (m)	N/A	Depth (m)	.1
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F000466	Metagenome / Metatranscriptome	1105	Y
F002911	Metagenome / Metatranscriptome	521	Y
F007624	Metagenome / Metatranscriptome	348	N
F008634	Metagenome / Metatranscriptome	330	Y
F010450	Metagenome / Metatranscriptome	303	Y
F010721	Metagenome / Metatranscriptome	300	Y
F012657	Metagenome	278	Y
F027165	Metagenome	195	Y
F031184	Metagenome	183	Y
F034501	Metagenome	174	Y
F067238	Metagenome / Metatranscriptome	126	Y
F078037	Metagenome	116	N
F091102	Metagenome	107	N
F097461	Metagenome / Metatranscriptome	104	Y

Family

Category

Number of Sequences

3D Structure?

F000466

Metagenome / Metatranscriptome

1105

F002911

Metagenome / Metatranscriptome

521

F007624

Metagenome / Metatranscriptome

348

F008634

Metagenome / Metatranscriptome

330

F010450

Metagenome / Metatranscriptome

303

F010721

Metagenome / Metatranscriptome

300

F012657

Metagenome

278

F027165

Metagenome

195

F031184

Metagenome

183

F034501

Metagenome

174

F067238

Metagenome / Metatranscriptome

126

F078037

Metagenome

116

F091102

Metagenome

107

F097461

Metagenome / Metatranscriptome

104

Scaffold	Taxonomy	Length	IMG/M Link
JGI12409J11926_100191	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2023	Open in IMG/M
JGI12409J11926_100220	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1952	Open in IMG/M
JGI12409J11926_100297	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1779	Open in IMG/M
JGI12409J11926_100849	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1220	Open in IMG/M
JGI12409J11926_101166	Not Available	1063	Open in IMG/M
JGI12409J11926_101498	All Organisms → cellular organisms → Bacteria → Proteobacteria	941	Open in IMG/M
JGI12409J11926_101688	All Organisms → cellular organisms → Bacteria	887	Open in IMG/M
JGI12409J11926_102196	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	785	Open in IMG/M
JGI12409J11926_102288	Not Available	768	Open in IMG/M
JGI12409J11926_102690	Not Available	708	Open in IMG/M
JGI12409J11926_104063	Not Available	578	Open in IMG/M
JGI12409J11926_104507	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	552	Open in IMG/M
JGI12409J11926_105081	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	521	Open in IMG/M
JGI12409J11926_105142	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	519	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

JGI12409J11926_100191

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium

2023

Open in IMG/M

JGI12409J11926_100220

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales

1952

Open in IMG/M

JGI12409J11926_100297

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria

1779

Open in IMG/M

JGI12409J11926_100849

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria

1220

Open in IMG/M

JGI12409J11926_101166

Not Available

1063

Open in IMG/M

JGI12409J11926_101498

All Organisms → cellular organisms → Bacteria → Proteobacteria

941

Open in IMG/M

JGI12409J11926_101688

All Organisms → cellular organisms → Bacteria

887

Open in IMG/M

JGI12409J11926_102196

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium

785

Open in IMG/M

JGI12409J11926_102288

Not Available

768

Open in IMG/M

JGI12409J11926_102690

Not Available

708

Open in IMG/M

JGI12409J11926_104063

Not Available

578

Open in IMG/M

JGI12409J11926_104507

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales

552

Open in IMG/M

JGI12409J11926_105081

All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae

521

Open in IMG/M

JGI12409J11926_105142

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium

519

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
JGI12409J11926_100191	JGI12409J11926_1001911	F007624	ENCDSQRRLRIERFVCPRCGRTLSVLPKNRLPYVAVNTTILESDFDARASGTDPPSCSEKERGCLGRAFERFADRVAPLCALLGQMIRGIKPSVSECWRALRQLDNLEGILLLLGTKFNTSLLADYRCLQPGF*
JGI12409J11926_100220	JGI12409J11926_1002202	F027165	MGYNARNDEIHENLERMRREREAYEDALVIVRQFNARLSAKKTAWFWPTIGAALASKHHWLIIACDACDTVIDLDLTVKRRDADATIRVALNDVRCPRCNGHGRTRIVGLSRYPSI*
JGI12409J11926_100297	JGI12409J11926_1002973	F012657	PVMLAASLHQMAERDDPQVAPETFRLPEAFHDRFREKILLYREANILLVLMDRVNPSRDGRDPLFEPVFWEYERIVFWELPRIFGESFNPDRAARRQSVAVALRDLNVRMHPPIGNRYDFALSWSRNWFAGIGHNEINPATLARFSSFWSSEYTAVQKVLDAAVKTSRRLIDFTFIKRRILNLWSGG*
JGI12409J11926_100849	JGI12409J11926_1008493	F078037	MDAKVSAVILVTAFTASAALAQGPSTEKLKADAQEVVKIISSDSAKAQAYXETIKLGDQMDQAEQNNDSDKAEGLSXKXDELNQKLGPEYLKLGQDLQDIDPNSPDGLELGRTLAALDKLCK*
JGI12409J11926_101166	JGI12409J11926_1011661	F031184	MADLPKIDVVIGNNFGHLPMFIGAEKGYFKRHGVDAKM
JGI12409J11926_101498	JGI12409J11926_1014982	F010450	MNSVPFSRDFVAAGASAYRPRGEPGLAQRGLLRRVVDAIALSHQRAVERDIARVARGLGLGNPDGRLTDEIERRLFEHL
JGI12409J11926_101688	JGI12409J11926_1016881	F010721	YIDTPKGRLSAGFTVPGTADAADVAMQLRERGWAPYKLRLDLEQHAWIAVVIDWKRAA*
JGI12409J11926_102196	JGI12409J11926_1021962	F000466	MAHLLTYMTTPEAWQRWKKLPSQGVVKRDWVPTGRIDFATRFYGNLEDSDQPSEFKLIVEERRIVESITGNENLEIQWRLATLNEAXVVVAQYXKXLSENSLIXSVFDEPASLPPPKRIQKIQESTAA*
JGI12409J11926_102288	JGI12409J11926_1022881	F012657	VNQKGRDLLVCSRDFETKAAASRIIAMAWLKIIEKKRLLSASPVMIAASLHQMAEKYDPQVAPTTLHXPEAVHADFREKVFLYREANVLLALVDRVNPSSDGRDSLFEPVFWEYERIIFRESSDHFGELSDHPILRAARRESVAAALQDLNFRMHPPRVNKWDFAVDWSRNWFAGI
JGI12409J11926_102690	JGI12409J11926_1026901	F091102	NRMKQWKLLPLICGAWVVTWYPSWAIEKRFLEIPGPHDSIVTFDLDTVQIIQPGRFTVVSTEIDNPEVMQFRLNVLEHLRTHCAHAEGKYPAPPELFTLGRPDIAVADIEVAHVSGSKFVRWFYPYLLLSPTLENYEILFCDGESNYFEMRTLIANGSRHKDVYDCRRGLYGMMHDENDPTSALLIVVPEGSYLFDYYVAVCRALTHEEPYLPQKH*
JGI12409J11926_104063	JGI12409J11926_1040631	F034501	MHDTHKQDYLAQAERHIAKAQERIARQKGIIDKLVQAGQETDCATSMLHALETCLHAFE
JGI12409J11926_104507	JGI12409J11926_1045072	F008634	MYGKGPELEIGNATSAILISLLRKLADKDILSNTEIRSLLTEAASDLGPHEYTAPVKGAIGIILDDILPQF
JGI12409J11926_105081	JGI12409J11926_1050811	F002911	VGYVYDDPAVPYKQISQTYWAETAYMVKQRLGISLRITYNSARSGMQPNVNPNDAALLGNASLIQQGIFDPMGLFPSATSNVQFASTQISQVIVPQWIGQSKVYYLFPHKFEGGLVFYYGSYRDYWNPNLNGVLRNFNVYVGRTW*
JGI12409J11926_105142	JGI12409J11926_1051422	F067238	KPLSSKAMVVNVAERWDMISAGMVERGERKQTAAEASKAD*
JGI12409J11926_105203	JGI12409J11926_1052032	F097461	GEPLFVFSAPRYLALCRAMLPERRTGAALGDMHDFSDLLDIGASARGA*

Scaffold ID

Protein ID

Family

Sequence

JGI12409J11926_100191

JGI12409J11926_1001911

F007624

ENCDSQRRLRIERFVCPRCGRTLSVLPKNRLPYVAVNTTILESDFDARASGTDPPSCSEKERGCLGRAFERFADRVAPLCALLGQMIRGIKPSVSECWRALRQLDNLEGILLLLGTKFNTSLLADYRCLQPGF*

JGI12409J11926_100220

JGI12409J11926_1002202

F027165

MGYNARNDEIHENLERMRREREAYEDALVIVRQFNARLSAKKTAWFWPTIGAALASKHHWLIIACDACDTVIDLDLTVKRRDADATIRVALNDVRCPRCNGHGRTRIVGLSRYPSI*

JGI12409J11926_100297

JGI12409J11926_1002973

F012657

PVMLAASLHQMAERDDPQVAPETFRLPEAFHDRFREKILLYREANILLVLMDRVNPSRDGRDPLFEPVFWEYERIVFWELPRIFGESFNPDRAARRQSVAVALRDLNVRMHPPIGNRYDFALSWSRNWFAGIGHNEINPATLARFSSFWSSEYTAVQKVLDAAVKTSRRLIDFTFIKRRILNLWSGG*

JGI12409J11926_100849

JGI12409J11926_1008493

F078037

MDAKVSAVILVTAFTASAALAQGPSTEKLKADAQEVVKIISSDSAKAQAYXETIKLGDQMDQAEQNNDSDKAEGLSXKXDELNQKLGPEYLKLGQDLQDIDPNSPDGLELGRTLAALDKLCK*

JGI12409J11926_101166

JGI12409J11926_1011661

F031184

MADLPKIDVVIGNNFGHLPMFIGAEKGYFKRHGVDAKM

JGI12409J11926_101498

JGI12409J11926_1014982

F010450

MNSVPFSRDFVAAGASAYRPRGEPGLAQRGLLRRVVDAIALSHQRAVERDIARVARGLGLGNPDGRLTDEIERRLFEHL

JGI12409J11926_101688

JGI12409J11926_1016881

F010721

YIDTPKGRLSAGFTVPGTADAADVAMQLRERGWAPYKLRLDLEQHAWIAVVIDWKRAA*

JGI12409J11926_102196

JGI12409J11926_1021962

F000466

MAHLLTYMTTPEAWQRWKKLPSQGVVKRDWVPTGRIDFATRFYGNLEDSDQPSEFKLIVEERRIVESITGNENLEIQWRLATLNEAXVVVAQYXKXLSENSLIXSVFDEPASLPPPKRIQKIQESTAA*

JGI12409J11926_102288

JGI12409J11926_1022881

F012657

VNQKGRDLLVCSRDFETKAAASRIIAMAWLKIIEKKRLLSASPVMIAASLHQMAEKYDPQVAPTTLHXPEAVHADFREKVFLYREANVLLALVDRVNPSSDGRDSLFEPVFWEYERIIFRESSDHFGELSDHPILRAARRESVAAALQDLNFRMHPPRVNKWDFAVDWSRNWFAGI

JGI12409J11926_102690

JGI12409J11926_1026901

F091102

NRMKQWKLLPLICGAWVVTWYPSWAIEKRFLEIPGPHDSIVTFDLDTVQIIQPGRFTVVSTEIDNPEVMQFRLNVLEHLRTHCAHAEGKYPAPPELFTLGRPDIAVADIEVAHVSGSKFVRWFYPYLLLSPTLENYEILFCDGESNYFEMRTLIANGSRHKDVYDCRRGLYGMMHDENDPTSALLIVVPEGSYLFDYYVAVCRALTHEEPYLPQKH*

JGI12409J11926_104063

JGI12409J11926_1040631

F034501

MHDTHKQDYLAQAERHIAKAQERIARQKGIIDKLVQAGQETDCATSMLHALETCLHAFE

JGI12409J11926_104507

JGI12409J11926_1045072

F008634

MYGKGPELEIGNATSAILISLLRKLADKDILSNTEIRSLLTEAASDLGPHEYTAPVKGAIGIILDDILPQF

JGI12409J11926_105081

JGI12409J11926_1050811

F002911

VGYVYDDPAVPYKQISQTYWAETAYMVKQRLGISLRITYNSARSGMQPNVNPNDAALLGNASLIQQGIFDPMGLFPSATSNVQFASTQISQVIVPQWIGQSKVYYLFPHKFEGGLVFYYGSYRDYWNPNLNGVLRNFNVYVGRTW*

JGI12409J11926_105142

JGI12409J11926_1051422

F067238

KPLSSKAMVVNVAERWDMISAGMVERGERKQTAAEASKAD*

JGI12409J11926_105203

JGI12409J11926_1052032

F097461

GEPLFVFSAPRYLALCRAMLPERRTGAALGDMHDFSDLLDIGASARGA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300000715: Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 73

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences