Basic Information | |
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Family ID | F097461 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 104 |
Average Sequence Length | 49 residues |
Representative Sequence | FFVGTAPRHLALRRAVLPERRTGAALGDMHDFSDLLDTGAATRGA |
Number of Associated Samples | 100 |
Number of Associated Scaffolds | 104 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 0.00 % |
% of genes near scaffold ends (potentially truncated) | 0.00 % |
% of genes from short scaffolds (< 2000 bps) | 0.00 % |
Associated GOLD sequencing projects | 95 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.27 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (100.000 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil (9.615 % of family members) |
Environment Ontology (ENVO) | Unclassified (17.308 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (47.115 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 45.21% β-sheet: 0.00% Coil/Unstructured: 54.79% |
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Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.27 |
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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
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Visualization |
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Freshwater Sediment Freshwater Lake Sediment Freshwater Freshwater Lake Sediment Freshwater Sediment Bog Forest Soil Peatland Freshwater Sediment Polar Desert Sand Salt Marsh Natural And Restored Wetlands Groundwater Sediment Watersheds Soil Soil Vadose Zone Soil Terrestrial Soil Glacier Forefield Soil Peatlands Soil Soil Soil Arctic Peat Soil Forest Soil Soil Soil Soil Natural And Restored Wetlands Tropical Peatland Bog Forest Soil Permafrost Soil Permafrost Tropical Forest Soil Forest Soil Corn, Switchgrass And Miscanthus Rhizosphere Corn Rhizosphere Switchgrass Rhizosphere Fen Arabidopsis Rhizosphere Avena Fatua Rhizosphere Miscanthus Rhizosphere Populus Rhizosphere Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Corn Rhizosphere Miscanthus Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere |
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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Geographical Distribution | |
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Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Protein ID | Sample Taxon ID | Habitat | Sequence |
JGI12377J11919_1011131 | 3300000678 | Tropical Forest Soil | VLAGQCDNVGGEPLFVFSAPRYLALCRAMLPERRTGAALGDMHDFSDLLDIGASARGA* |
JGI12370J11904_1011171 | 3300000681 | Tropical Forest Soil | AVLAGQCDNVGGEPLFVFSAPRYLALCRAMLPERRTGAALGDMHDFSDLLDIGASARGA* |
JGI12295J11885_1025452 | 3300000707 | Tropical Forest Soil | VAAVLAGQCDNVGGEPLFVXSAPRYLALCRAMLPERRTGAALGDMHDFSDLLDIGASARGA* |
JGI12409J11926_1052032 | 3300000715 | Tropical Forest Soil | GEPLFVFSAPRYLALCRAMLPERRTGAALGDMHDFSDLLDIGASARGA* |
JGI12408J11912_10164992 | 3300000733 | Tropical Forest Soil | VAAVLAGQCDNVGGEPLFVFSAPRYLALCRAMLPERRTGAALGDMHDFSDLLDIGASARGA* |
JGI24139J26690_10624721 | 3300002162 | Arctic Peat Soil | NNVGGEPLFVITAPRDLALCRAMLPERRTGAALGDMHDFYNLLDTGAAARGA* |
Ga0007429J51699_10208562 | 3300003579 | Avena Fatua Rhizosphere | CDGVGSEPLFVFTAPRYLALRRTVLSERRTGAPLGDMHDRLDLLDTGATTRGA* |
Ga0055432_102236861 | 3300004022 | Natural And Restored Wetlands | GRQLFFVITAPRYLALRRAMLPERRTGAALGDMHDLSDLLDTGAATRGA* |
Ga0066815_101093851 | 3300005164 | Soil | APRHLALRRAVLPERRTGAALGDMHDLSDLLDTGTATRGA* |
Ga0070683_1011771383 | 3300005329 | Corn Rhizosphere | FFVGTAPRHLALRRAVLPERRTGAALGDMHDFSDLLDTGAATRGA* |
Ga0070703_104614982 | 3300005406 | Corn, Switchgrass And Miscanthus Rhizosphere | EPLFVFTAPRYLALRRTVLSERRTGAPLGDMHDRLDLLDTGATTRGA* |
Ga0070711_1006885922 | 3300005439 | Corn, Switchgrass And Miscanthus Rhizosphere | LAPSPLELALRRAVLPERRTGATLGHMQVFTNVLNAGATTRGA* |
Ga0070686_1010989253 | 3300005544 | Switchgrass Rhizosphere | FFVGTAPRHLALRRAVLPERRASTALGDMHDFFDVLDTGAAACGA* |
Ga0068870_111606041 | 3300005840 | Miscanthus Rhizosphere | GTAPRHLALRRAVLPERRASTALGYMHDFFDVLDTGAAACGA* |
Ga0075023_1003732793 | 3300006041 | Watersheds | HLALRRAVLPERRTGTALGDMHDFFDLLDTGAAACGAQ* |
Ga0075024_1008884863 | 3300006047 | Watersheds | LALRRAVLPERRTDTTLGDMQLPLHMLNAGATTRGA* |
Ga0075019_111615751 | 3300006086 | Watersheds | CNNVGGEPLFVITAPRYLALCRAMLPERRTGAALGDMHDFYNLLDTGASARGA* |
Ga0075021_110326172 | 3300006354 | Watersheds | PRHLALCRAVLPERRTDTTLGDMQLLSYMLNAGATTRGA* |
Ga0068865_1019782482 | 3300006881 | Miscanthus Rhizosphere | APRHLALRRAVLPERRASTALGYMHDFFDVLDTGAAACGA* |
Ga0075419_109807372 | 3300006969 | Populus Rhizosphere | RYLALRRAVLSERRTGAALGDMHDRLDLLDTGATTRGA* |
Ga0105250_106046501 | 3300009092 | Switchgrass Rhizosphere | LFVCTAPRYLALRRAVLSERRTGTALGDMHDFFDLLDTRAAACGAQ* |
Ga0105104_102102332 | 3300009168 | Freshwater Sediment | MQLFVFTAPRYLALRRTVLSERRTGAPLGDMHDRLDLLDTGATTRGA* |
Ga0105242_119213051 | 3300009176 | Miscanthus Rhizosphere | LALRRAVLPERRTGTALGDMHDFFDLLDTGAAACGAQ* |
Ga0116108_11636801 | 3300009519 | Peatland | RDGIGGEPLFVITAPRYLALRRAVLPERRTSAALGDMHDFSDLLDTRAATRGA* |
Ga0116214_12694733 | 3300009520 | Peatlands Soil | ALRRAVLPERRTGAALGDMQMRSDLLDTGAATRGA* |
Ga0116214_13217293 | 3300009520 | Peatlands Soil | LALRRAVLPERRTGAALGDMQMRSDLLDTGAPTRGA* |
Ga0116137_11708641 | 3300009549 | Peatland | APRYLALRRAVLPERRTSATLGDMHDFSDLLDTGAATRGA* |
Ga0105855_11235783 | 3300009649 | Permafrost Soil | GVCCQTFLVIAAPRYLALRRAVLPERRTGATLGDMHDFFDLLDTGAAARGA* |
Ga0116224_104256691 | 3300009683 | Peatlands Soil | DGIGGEPLFVITAPRYLALRRAVLPERRTSAALGNMHDFSDLLDTGAATRGA* |
Ga0074044_108203432 | 3300010343 | Bog Forest Soil | VFTAPRCLALRRAVLPERRTGAALGDMQMRSDLLDTGAPTRGA* |
Ga0105239_130026603 | 3300010375 | Corn Rhizosphere | FFVGTAPRHLALRRAVLPERRASTALGYMHDFFDVLDTGAAACGA* |
Ga0136449_1013571733 | 3300010379 | Peatlands Soil | LPGQCDGVGGEPLFVFTAPRYLALRRAVLPERRTGAALGDMHDFSYLLDTGAATRGA* |
Ga0136449_1042529822 | 3300010379 | Peatlands Soil | LFVITAPRDLALCRAMLPERRTGAALGDMHDFYNLLDTGAAARGA* |
Ga0136847_118221422 | 3300010391 | Freshwater Sediment | ALRRAMLPERRTSAALGDMQVMADMLDTGTAARGA* |
Ga0134126_1002939010 | 3300010396 | Terrestrial Soil | LPGKFDDVGGEPLFVCTAPRYLALRRAVLPERRTGATLGDMHGFSDLLDTGAATRGA* |
Ga0138560_11621062 | 3300011083 | Peatlands Soil | VGGELLLVFTAPRCLALRRAVLPERRTGAALGDMQMRSDLLDTGAATRGA* |
Ga0137382_103982581 | 3300012200 | Vadose Zone Soil | HLALRRAVLPERRTDTTLGDMQLPSHMLNAGATTRGA* |
Ga0137376_117626562 | 3300012208 | Vadose Zone Soil | GSEPLFVFTAPRYLALRRTVLSERHTGAPLGDMHDRLDLLDTGATTRGA* |
Ga0150985_1052885871 | 3300012212 | Avena Fatua Rhizosphere | QPFFVGTAPRHLALRRAVLPERRTGAALGDMHNFFDLLDARAAACGAQ* |
Ga0136612_103508312 | 3300012680 | Polar Desert Sand | LPGQGDQVGGQPLFVGTAPRHLALRRAVLPERRTGAALGDMHDFFDLLDTRAAACGAQ* |
Ga0157289_102562193 | 3300012903 | Soil | LRRAVLSERRTGAALGDMHDRLDLLDTGATTRGA* |
Ga0157296_103886272 | 3300012905 | Soil | LPGQGNEVGGQPFFVMTAPRDLALRRAVLPERRTGAALGEKQLRSDLLNAGAATRGA* |
Ga0157308_102593672 | 3300012910 | Soil | GDLAIAVAAVLPGQGDEVGGQSFFVGTAPRHLALRRAVLPERRASTALGDMHDFFDVLDTGAAACGA* |
Ga0157297_103937062 | 3300012914 | Soil | FFVGTAPRHLALRRAVLPERRTGTALGDMHDFFDLLDTRAAACGAQ* |
Ga0164298_108005581 | 3300012955 | Soil | EVGGQSFFVGTAPRHLALRRAVLPERRASTALGDMHDFFDVLDTGAAACGA* |
Ga0164298_109521941 | 3300012955 | Soil | VGGQSFFVGTAPRHLALRRAVLPERRTGAALGDLQTLSNMIDAGAPAGGA* |
Ga0157375_125039551 | 3300013308 | Miscanthus Rhizosphere | VFTAPRYLALRRTVLSERRTGAPLGDMHDRLDLLDTGATTRGA* |
Ga0075327_13324781 | 3300014272 | Natural And Restored Wetlands | QLFFVITAPRDLALRRAMLPERRTGAALGDMHDLSDLLDTGAATRGA* |
Ga0075340_10650901 | 3300014304 | Natural And Restored Wetlands | GGEPLFVGTAPRYLALCRAVLPERRADPALGDMHDLSDLLDTGAATRGA* |
Ga0182024_129620421 | 3300014501 | Permafrost | RNNVGGEQLFVITAPRDLALCRAMLPERRTGAALGDMHDFYNLLDTGAAARGA* |
Ga0167651_11078091 | 3300015190 | Glacier Forefield Soil | GNEVGSQPFFVGTAPRHLALRRAVLPERRTSTALGDMHDFFDLLDTGAAACGAQ* |
Ga0132257_1014750601 | 3300015373 | Arabidopsis Rhizosphere | VGGEPLFVFTAPRYLALRRAVLSERRTGAPLGDMHDRLDLLDTGATTRGA* |
Ga0132255_1028073752 | 3300015374 | Arabidopsis Rhizosphere | YLALRRAVLSERRTGAALGDMHDRLDLLDTGATTRGA* |
Ga0132255_1048620161 | 3300015374 | Arabidopsis Rhizosphere | DEVGGQSFFVGTAPRHLALRRAVLPERRTSTALGDMHDFFDVLDTGAAACGA* |
Ga0182038_108460631 | 3300016445 | Soil | ARDFALRRAVLPERRTGATFGNMQLRADLLNAGAATRGA |
Ga0187803_104693002 | 3300017934 | Freshwater Sediment | LAITVAAVLPGKCNNVGGEPLFVITAPRYLALRRAMLPERRTGAALGDMHDFYDLPDTGASARGA |
Ga0187819_106285722 | 3300017943 | Freshwater Sediment | DLALRRAVLPERRTGVTLGHMQVLTNVLNAGATTRGA |
Ga0190266_109805972 | 3300017965 | Soil | AVAAVLPGQGNEVGSQPFFVGAAPRHLALRRAVLPERRTSTALGDMHDVFNLLDTGAAACGAQ |
Ga0187780_113096581 | 3300017973 | Tropical Peatland | LALRRAVLPERRTSATLGDMHDFSDLLDTGAATRGA |
Ga0187784_100871817 | 3300018062 | Tropical Peatland | LALRRAVLPERRTGAALGDIHDLSDLLDTGTAARGA |
Ga0184617_12258851 | 3300018066 | Groundwater Sediment | FFVGAAPRHLALRRAVLPERRTSTALGDMHDFFDLLDTGAAACGAQ |
Ga0194111_108942571 | 3300020083 | Freshwater Lake | AIAAIQPGQRKGVGGEPLFVITAPRDLALCRAVLPERRTGATLGDMQDFTDLLDTGAATRGA |
Ga0194131_101301931 | 3300020193 | Freshwater Lake | QQTGDLAIAIAAIQPGQRKGVGGEPLFVITAPRDLALCRAVLPERRTGATLGDMQDFTDLLDTGAATRGA |
Ga0247788_11198872 | 3300022901 | Soil | AAVLPGQGDEVGGQSFFVGTAPRHLALRRAVLPERRASTALGYMHDFFDVLDTGAAACGA |
Ga0247800_11347962 | 3300023263 | Soil | AVAAVLPGQGNEVGGQPFFVGAAPRHLALRRAVLSERRTSTALGDMHDFFDLLDIGAAACGAQ |
Ga0207928_10755931 | 3300025494 | Arctic Peat Soil | DLALCRAMLPERRTGAALGDMHDFYNLLDTGAAARGA |
Ga0209014_100178781 | 3300025857 | Arctic Peat Soil | LALRRAVLPERRTSAALGDMQMISDMLDAGTATRGAQ |
Ga0209585_104619192 | 3300025891 | Arctic Peat Soil | AAVLAGQRNNVGGEQLFVITAPRDLALCRAMLPERRTGAALGDMHDFYNLLDTGAAARGA |
Ga0207680_112314362 | 3300025903 | Switchgrass Rhizosphere | AAVLPGQGDEVGGQSFFVGTAPRHLALRRAVLPERRASTALGDMHDFFDVLDTGAAACGA |
Ga0207669_116205712 | 3300025937 | Miscanthus Rhizosphere | DLAIAVAAVLPGQGDEVGGQSFFVGTAPRHLALRRAVLPERRASTALGDMHDFFDVLDTGAAACGA |
Ga0207668_120935923 | 3300025972 | Switchgrass Rhizosphere | DGVGSEPLFVFTAPRYLALRRTVLSERRTGAALGDRHDRLDLLDTGATTRGA |
Ga0208540_10439352 | 3300026059 | Natural And Restored Wetlands | PVAAVLPGQCDEVGRQLFFVITAPRYLALRRAMLPERRTGAALGDMHDLSDLLDTGAATRGA |
Ga0209847_10802231 | 3300026276 | Permafrost Soil | AAVLAGQRNNVGGEPLFVITAPRDLALCRAMLPERRTGAALGDMHDFYNLLDTGAAARGA |
Ga0207742_1050333 | 3300026800 | Tropical Forest Soil | GMAACAFSALVGGEPLFVFSAPRYLALCRAMLPERRTGAALGDMHDFSDLLDIGASARGA |
Ga0207760_1195811 | 3300026845 | Tropical Forest Soil | LVGGEPLFVFSAPRYLALCRAMLPERRTGAALGDMHDFSDLLDIGASARGA |
Ga0207787_10310672 | 3300026908 | Tropical Forest Soil | AGQCDNVGGEPLFVFSAPRYLALCRAMLPERRTGAALGDMHDFSDLLDIGASARGA |
Ga0207858_10280763 | 3300026909 | Tropical Forest Soil | RYLALRRAVLPERHTSAALGDRHDFYDLLDTGAATRGA |
Ga0207776_10164391 | 3300027035 | Tropical Forest Soil | VGGEPLFVFSAPRYLALCRAMLPERRTGAALGDMHDFSDLLDIGASARGA |
Ga0207467_10069261 | 3300027036 | Soil | VLPGQGDEVGGQSFFVGTAPRHLALRRAVLPERRASTALGDMHDFFDVLDTGAAACGA |
Ga0207601_1124451 | 3300027461 | Soil | LFIGTAPRHLALRRAVLPERRTGTALGDMHDFFDLLDTRAAACGAQ |
Ga0208993_11003872 | 3300027480 | Forest Soil | VGGEPLFVFTAPRYLALRRAVLSERRTGAALGDMHDRLDLLDTGATTRGA |
Ga0208199_11258351 | 3300027497 | Peatlands Soil | AAVLPGKLDDVGGELLFVFTAPRCLALRRAVLPERRTGAALGDMQMRSDLLDTGAPTRGA |
(restricted) Ga0247833_13308711 | 3300027730 | Freshwater | SNDIGGEPLFIVTAPRDLALCRAMLPERHTGAALGDMHDLYNLLDTGASARGA |
Ga0209040_104928591 | 3300027824 | Bog Forest Soil | PRHLALCRAVLPERRTGAALGDMHDLSDLLDTGTATRGA |
Ga0209048_110010151 | 3300027902 | Freshwater Lake Sediment | ISAPRYLALRRAVLPERRTGAALGDMHDFYDLLDTGAAARGA |
Ga0209583_103896061 | 3300027910 | Watersheds | GDEVGGQPFFVGTAPRHLALRRAVLPERRTGTALGDMHDFFDLLDTGAAACGAQ |
Ga0209069_105646341 | 3300027915 | Watersheds | AIAVAAVESSQCDHIGGETFFVISAPRDLALCRAVLPERRTGAALGDMQDFSDLLDTGAAARGA |
Ga0247821_112813732 | 3300028596 | Soil | PRRLALRRAVLPERRTGTALGDMHDFFDLLDTRAAACGAQ |
Ga0311337_109249381 | 3300030000 | Fen | AVAAVLSGQCDQIGRQLIFVVAAPRYLALCRAVLPERRTSAALGDIHGGLDMLDTGAATRGAQ |
Ga0310039_100705941 | 3300030706 | Peatlands Soil | LALRRAVLPERRTGAALGDMQMRSDLLDTGAATRGA |
Ga0170834_1035726231 | 3300031057 | Forest Soil | VVTAPRCLALRRAVLPERRTSAALGDMQMRSDLLDTGAATRGA |
Ga0307440_11640561 | 3300031367 | Salt Marsh | PRYLALRRAVLPERRTSAALGDMHDFYDLLDTGASARGA |
Ga0170819_131940832 | 3300031469 | Forest Soil | GVGSEPLFVFTAPRYLALRRTVLSERRTGAPLGDMHDRLDLLDTGATTRGA |
Ga0307419_102032551 | 3300031537 | Salt Marsh | VFVSTAPRDLALCRAMLPERRTGTALGDMHDLSDLLDTSAATRGA |
Ga0316579_102468052 | 3300031691 | Rhizosphere | QCDEIGRQLFFVITAPRYLALRRAMLPERRTGAALGDMHDLSDLLDTGAATRGA |
Ga0310686_1123845731 | 3300031708 | Soil | PRYLALRRAVLPERRTGAALGDLHDCSDLLDTGAATRGA |
Ga0306917_113906561 | 3300031719 | Soil | FALRRAVLPERRTGATFGNMQLRADLLNAGAATRGA |
Ga0308175_1032641511 | 3300031938 | Soil | EVGGQPFFVGTAPRHLALRRAVLPERRASTALGDMHDFFDVLDAAAAARGAQ |
Ga0311301_111917793 | 3300032160 | Peatlands Soil | LPGQCDGVGGEPLFVFTAPRYLALRRAVLPERRTGAALGDMHDFSYLLDTGAATRGA |
Ga0315276_126125541 | 3300032177 | Sediment | DVGGQPLLVFTAPRHLALRRAMLPERRTSAALGDMQVMSDVLDTGAATRGA |
Ga0335082_116383591 | 3300032782 | Soil | LSGQGNEVGSQPFFVGTAPRHLALRRAVLPERRASTALGDMHDFFDVLYTGAAACGAQ |
Ga0247829_111864681 | 3300033550 | Soil | AAVLSGQRDGIGDEPFFVITAPRYLALGRAVLPERRTGAALGDMHDFSDLLDTGAATRGA |
Ga0370545_110003_446_607 | 3300034643 | Soil | CDGVGSEPLFVFTAPRYLALRRTVLSERRTGAPLGDRHDRLDLLDTGATTRGA |
Ga0370548_088956_3_170 | 3300034644 | Soil | GQCDGVGSEPLFVFTAPRYLALRRTVLSERRTGAPLGDMHDRLDLLDTGATTRGA |
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