Metagenome / Metatranscriptome Family F097461

Basic Information
Family ID	F097461
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	49 residues
Representative Sequence	FFVGTAPRHLALRRAVLPERRTGAALGDMHDFSDLLDTGAATRGA
Number of Associated Samples	100
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	0.00 %
% of genes from short scaffolds (< 2000 bps)	0.00 %
Associated GOLD sequencing projects	95
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.27

Most Common Taxonomy
Group	Unclassified (100.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil (9.615 % of family members)
Environment Ontology (ENVO)	Unclassified (17.308 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (47.115 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 45.21% β-sheet: 0.00% Coil/Unstructured: 54.79%
Feature Viewer

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Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF01527	HTH_Tnp_1	90.38
PF13276	HTH_21	1.92
PF03401	TctC	0.96
PF01548	DEDD_Tnp_IS110	0.96
PF07883	Cupin_2	0.96
PF13340	DUF4096	0.96
PF00665	rve	0.96
PF01609	DDE_Tnp_1	0.96
PF02738	MoCoBD_1	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG2801	Transposase InsO and inactivated derivatives	Mobilome: prophages, transposons [X]	0.96
COG2826	Transposase and inactivated derivatives, IS30 family	Mobilome: prophages, transposons [X]	0.96
COG3039	Transposase and inactivated derivatives, IS5 family	Mobilome: prophages, transposons [X]	0.96
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.96
COG3293	Transposase	Mobilome: prophages, transposons [X]	0.96
COG3316	Transposase (or an inactivated derivative), DDE domain	Mobilome: prophages, transposons [X]	0.96
COG3385	IS4 transposase InsG	Mobilome: prophages, transposons [X]	0.96
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.96
COG4584	Transposase	Mobilome: prophages, transposons [X]	0.96
COG5421	Transposase	Mobilome: prophages, transposons [X]	0.96
COG5433	Predicted transposase YbfD/YdcC associated with H repeats	Mobilome: prophages, transposons [X]	0.96
COG5659	SRSO17 transposase	Mobilome: prophages, transposons [X]	0.96

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	100.00 %

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	84.62%
Host-Associated	Host-Associated	15.38%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	62.50%
Aquatic	Environmental → Aquatic	22.12%
Plants	Host-Associated → Plants	15.38%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	61.54%
Freshwater	Environmental → Aquatic → Freshwater	12.50%
Rhizosphere	Host-Associated → Plants → Rhizosphere	8.65%
Sediment	Environmental → Aquatic → Sediment	6.73%
Rhizoplane	Host-Associated → Plants → Rhizoplane	6.73%
Marine	Environmental → Aquatic → Marine	2.88%
Peat	Environmental → Terrestrial → Peat	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	37.50%
Loam	Environmental → Terrestrial → Soil → Loam	14.42%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	9.62%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	6.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.77%
Lake	Environmental → Aquatic → Freshwater → Lake	4.81%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	4.81%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.81%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.88%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	1.92%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.92%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.96%
Lentic	Environmental → Aquatic → Freshwater → Lentic	0.96%
Ice	Environmental → Aquatic → Freshwater → Ice	0.96%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.96%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	23.08%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	10.58%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	6.73%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	6.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.77%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.81%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.85%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	3.85%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.85%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.85%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	2.88%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.88%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	2.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.88%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	1.92%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.92%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.92%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	1.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.92%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.96%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.96%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.96%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	0.96%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.96%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	9.62%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	9.62%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	8.65%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	5.77%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	3.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.88%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	2.88%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.88%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	1.92%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	1.92%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.92%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	1.92%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.92%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.92%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.92%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	1.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.92%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	1.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.92%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.96%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	0.96%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	0.96%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.96%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Sediment	0.96%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.96%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	0.96%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.96%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.96%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.96%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.96%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.96%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.96%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.96%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.96%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.96%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.96%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.96%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.96%

Visualization

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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000678	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 46	Environmental	Open in IMG/M
3300000681	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 48	Environmental	Open in IMG/M
3300000707	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 39	Environmental	Open in IMG/M
3300000715	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 73	Environmental	Open in IMG/M
3300000733	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 80	Environmental	Open in IMG/M
3300002162	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 002-21A	Environmental	Open in IMG/M
3300003579	Grassland soil microbial communities from Hopland, California, USA - Sample H4_Rhizo_45 (Metagenome Metatranscriptome, Counting Only)	Host-Associated	Open in IMG/M
3300004022	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqA_D1	Environmental	Open in IMG/M
3300005164	Soil and rhizosphere microbial communities from Laval, Canada - mgLAC	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300006041	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014	Environmental	Open in IMG/M
3300006047	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300009092	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG	Host-Associated	Open in IMG/M
3300009168	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009519	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_150	Environmental	Open in IMG/M
3300009520	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG	Environmental	Open in IMG/M
3300009549	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_100	Environmental	Open in IMG/M
3300009649	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-059	Environmental	Open in IMG/M
3300009683	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010391	Freshwater sediment microbial communities from Lake Superior, USA - Station SU-17. Combined Assembly of Gp0155404, Gp0155335, Gp0155336, Gp0155336, Gp0155403, Gp0155406	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300011083	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 45 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012680	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ224A (23.06)	Environmental	Open in IMG/M
3300012903	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S134-311R-1	Environmental	Open in IMG/M
3300012905	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S013-104B-2	Environmental	Open in IMG/M
3300012910	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S198-509B-2	Environmental	Open in IMG/M
3300012914	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S028-104C-2	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014272	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_CattailB_D1	Environmental	Open in IMG/M
3300014304	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushMan_ThreeSqA_D1	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300015190	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-4a, rock/ice/stream interface)	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017934	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_3	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018066	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1	Environmental	Open in IMG/M
3300020083	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015033 Kigoma Deep Cast 300m	Environmental	Open in IMG/M
3300020193	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015053 Kigoma Offshore 120m	Environmental	Open in IMG/M
3300022901	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S156-409C-4	Environmental	Open in IMG/M
3300023263	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S092-311B-6	Environmental	Open in IMG/M
3300025494	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025857	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0002-212 (SPAdes)	Environmental	Open in IMG/M
3300025891	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost154B-one (SPAdes)	Environmental	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026059	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_TuleA_D1 (SPAdes)	Environmental	Open in IMG/M
3300026276	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-060 (SPAdes)	Environmental	Open in IMG/M
3300026800	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 43 (SPAdes)	Environmental	Open in IMG/M
3300026845	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 24 (SPAdes)	Environmental	Open in IMG/M
3300026908	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 77 (SPAdes)	Environmental	Open in IMG/M
3300026909	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 23 (SPAdes)	Environmental	Open in IMG/M
3300027035	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 30 (SPAdes)	Environmental	Open in IMG/M
3300027036	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G07A5-10 (SPAdes)	Environmental	Open in IMG/M
3300027461	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-ROWE15-E (SPAdes)	Environmental	Open in IMG/M
3300027480	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_M3 (SPAdes)	Environmental	Open in IMG/M
3300027497	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG (SPAdes)	Environmental	Open in IMG/M
3300027730 (restricted)	Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_8m	Environmental	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027902	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - CRP12 CR (SPAdes)	Environmental	Open in IMG/M
3300027910	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300028596	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glycerol_Day14	Environmental	Open in IMG/M
3300030000	I_Fen_N3 coassembly	Environmental	Open in IMG/M
3300030706	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG (v2)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031367	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1604-10	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031537	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1602-30	Environmental	Open in IMG/M
3300031691	Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA	Host-Associated	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032177	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_0	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M
3300034643	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_120 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034644	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_123 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12377J11919_1011131	3300000678	Tropical Forest Soil	VLAGQCDNVGGEPLFVFSAPRYLALCRAMLPERRTGAALGDMHDFSDLLDIGASARGA*
JGI12370J11904_1011171	3300000681	Tropical Forest Soil	AVLAGQCDNVGGEPLFVFSAPRYLALCRAMLPERRTGAALGDMHDFSDLLDIGASARGA*
JGI12295J11885_1025452	3300000707	Tropical Forest Soil	VAAVLAGQCDNVGGEPLFVXSAPRYLALCRAMLPERRTGAALGDMHDFSDLLDIGASARGA*
JGI12409J11926_1052032	3300000715	Tropical Forest Soil	GEPLFVFSAPRYLALCRAMLPERRTGAALGDMHDFSDLLDIGASARGA*
JGI12408J11912_10164992	3300000733	Tropical Forest Soil	VAAVLAGQCDNVGGEPLFVFSAPRYLALCRAMLPERRTGAALGDMHDFSDLLDIGASARGA*
JGI24139J26690_10624721	3300002162	Arctic Peat Soil	NNVGGEPLFVITAPRDLALCRAMLPERRTGAALGDMHDFYNLLDTGAAARGA*
Ga0007429J51699_10208562	3300003579	Avena Fatua Rhizosphere	CDGVGSEPLFVFTAPRYLALRRTVLSERRTGAPLGDMHDRLDLLDTGATTRGA*
Ga0055432_102236861	3300004022	Natural And Restored Wetlands	GRQLFFVITAPRYLALRRAMLPERRTGAALGDMHDLSDLLDTGAATRGA*
Ga0066815_101093851	3300005164	Soil	APRHLALRRAVLPERRTGAALGDMHDLSDLLDTGTATRGA*
Ga0070683_1011771383	3300005329	Corn Rhizosphere	FFVGTAPRHLALRRAVLPERRTGAALGDMHDFSDLLDTGAATRGA*
Ga0070703_104614982	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	EPLFVFTAPRYLALRRTVLSERRTGAPLGDMHDRLDLLDTGATTRGA*
Ga0070711_1006885922	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	LAPSPLELALRRAVLPERRTGATLGHMQVFTNVLNAGATTRGA*
Ga0070686_1010989253	3300005544	Switchgrass Rhizosphere	FFVGTAPRHLALRRAVLPERRASTALGDMHDFFDVLDTGAAACGA*
Ga0068870_111606041	3300005840	Miscanthus Rhizosphere	GTAPRHLALRRAVLPERRASTALGYMHDFFDVLDTGAAACGA*
Ga0075023_1003732793	3300006041	Watersheds	HLALRRAVLPERRTGTALGDMHDFFDLLDTGAAACGAQ*
Ga0075024_1008884863	3300006047	Watersheds	LALRRAVLPERRTDTTLGDMQLPLHMLNAGATTRGA*
Ga0075019_111615751	3300006086	Watersheds	CNNVGGEPLFVITAPRYLALCRAMLPERRTGAALGDMHDFYNLLDTGASARGA*
Ga0075021_110326172	3300006354	Watersheds	PRHLALCRAVLPERRTDTTLGDMQLLSYMLNAGATTRGA*
Ga0068865_1019782482	3300006881	Miscanthus Rhizosphere	APRHLALRRAVLPERRASTALGYMHDFFDVLDTGAAACGA*
Ga0075419_109807372	3300006969	Populus Rhizosphere	RYLALRRAVLSERRTGAALGDMHDRLDLLDTGATTRGA*
Ga0105250_106046501	3300009092	Switchgrass Rhizosphere	LFVCTAPRYLALRRAVLSERRTGTALGDMHDFFDLLDTRAAACGAQ*
Ga0105104_102102332	3300009168	Freshwater Sediment	MQLFVFTAPRYLALRRTVLSERRTGAPLGDMHDRLDLLDTGATTRGA*
Ga0105242_119213051	3300009176	Miscanthus Rhizosphere	LALRRAVLPERRTGTALGDMHDFFDLLDTGAAACGAQ*
Ga0116108_11636801	3300009519	Peatland	RDGIGGEPLFVITAPRYLALRRAVLPERRTSAALGDMHDFSDLLDTRAATRGA*
Ga0116214_12694733	3300009520	Peatlands Soil	ALRRAVLPERRTGAALGDMQMRSDLLDTGAATRGA*
Ga0116214_13217293	3300009520	Peatlands Soil	LALRRAVLPERRTGAALGDMQMRSDLLDTGAPTRGA*
Ga0116137_11708641	3300009549	Peatland	APRYLALRRAVLPERRTSATLGDMHDFSDLLDTGAATRGA*
Ga0105855_11235783	3300009649	Permafrost Soil	GVCCQTFLVIAAPRYLALRRAVLPERRTGATLGDMHDFFDLLDTGAAARGA*
Ga0116224_104256691	3300009683	Peatlands Soil	DGIGGEPLFVITAPRYLALRRAVLPERRTSAALGNMHDFSDLLDTGAATRGA*
Ga0074044_108203432	3300010343	Bog Forest Soil	VFTAPRCLALRRAVLPERRTGAALGDMQMRSDLLDTGAPTRGA*
Ga0105239_130026603	3300010375	Corn Rhizosphere	FFVGTAPRHLALRRAVLPERRASTALGYMHDFFDVLDTGAAACGA*
Ga0136449_1013571733	3300010379	Peatlands Soil	LPGQCDGVGGEPLFVFTAPRYLALRRAVLPERRTGAALGDMHDFSYLLDTGAATRGA*
Ga0136449_1042529822	3300010379	Peatlands Soil	LFVITAPRDLALCRAMLPERRTGAALGDMHDFYNLLDTGAAARGA*
Ga0136847_118221422	3300010391	Freshwater Sediment	ALRRAMLPERRTSAALGDMQVMADMLDTGTAARGA*
Ga0134126_1002939010	3300010396	Terrestrial Soil	LPGKFDDVGGEPLFVCTAPRYLALRRAVLPERRTGATLGDMHGFSDLLDTGAATRGA*
Ga0138560_11621062	3300011083	Peatlands Soil	VGGELLLVFTAPRCLALRRAVLPERRTGAALGDMQMRSDLLDTGAATRGA*
Ga0137382_103982581	3300012200	Vadose Zone Soil	HLALRRAVLPERRTDTTLGDMQLPSHMLNAGATTRGA*
Ga0137376_117626562	3300012208	Vadose Zone Soil	GSEPLFVFTAPRYLALRRTVLSERHTGAPLGDMHDRLDLLDTGATTRGA*
Ga0150985_1052885871	3300012212	Avena Fatua Rhizosphere	QPFFVGTAPRHLALRRAVLPERRTGAALGDMHNFFDLLDARAAACGAQ*
Ga0136612_103508312	3300012680	Polar Desert Sand	LPGQGDQVGGQPLFVGTAPRHLALRRAVLPERRTGAALGDMHDFFDLLDTRAAACGAQ*
Ga0157289_102562193	3300012903	Soil	LRRAVLSERRTGAALGDMHDRLDLLDTGATTRGA*
Ga0157296_103886272	3300012905	Soil	LPGQGNEVGGQPFFVMTAPRDLALRRAVLPERRTGAALGEKQLRSDLLNAGAATRGA*
Ga0157308_102593672	3300012910	Soil	GDLAIAVAAVLPGQGDEVGGQSFFVGTAPRHLALRRAVLPERRASTALGDMHDFFDVLDTGAAACGA*
Ga0157297_103937062	3300012914	Soil	FFVGTAPRHLALRRAVLPERRTGTALGDMHDFFDLLDTRAAACGAQ*
Ga0164298_108005581	3300012955	Soil	EVGGQSFFVGTAPRHLALRRAVLPERRASTALGDMHDFFDVLDTGAAACGA*
Ga0164298_109521941	3300012955	Soil	VGGQSFFVGTAPRHLALRRAVLPERRTGAALGDLQTLSNMIDAGAPAGGA*
Ga0157375_125039551	3300013308	Miscanthus Rhizosphere	VFTAPRYLALRRTVLSERRTGAPLGDMHDRLDLLDTGATTRGA*
Ga0075327_13324781	3300014272	Natural And Restored Wetlands	QLFFVITAPRDLALRRAMLPERRTGAALGDMHDLSDLLDTGAATRGA*
Ga0075340_10650901	3300014304	Natural And Restored Wetlands	GGEPLFVGTAPRYLALCRAVLPERRADPALGDMHDLSDLLDTGAATRGA*
Ga0182024_129620421	3300014501	Permafrost	RNNVGGEQLFVITAPRDLALCRAMLPERRTGAALGDMHDFYNLLDTGAAARGA*
Ga0167651_11078091	3300015190	Glacier Forefield Soil	GNEVGSQPFFVGTAPRHLALRRAVLPERRTSTALGDMHDFFDLLDTGAAACGAQ*
Ga0132257_1014750601	3300015373	Arabidopsis Rhizosphere	VGGEPLFVFTAPRYLALRRAVLSERRTGAPLGDMHDRLDLLDTGATTRGA*
Ga0132255_1028073752	3300015374	Arabidopsis Rhizosphere	YLALRRAVLSERRTGAALGDMHDRLDLLDTGATTRGA*
Ga0132255_1048620161	3300015374	Arabidopsis Rhizosphere	DEVGGQSFFVGTAPRHLALRRAVLPERRTSTALGDMHDFFDVLDTGAAACGA*
Ga0182038_108460631	3300016445	Soil	ARDFALRRAVLPERRTGATFGNMQLRADLLNAGAATRGA
Ga0187803_104693002	3300017934	Freshwater Sediment	LAITVAAVLPGKCNNVGGEPLFVITAPRYLALRRAMLPERRTGAALGDMHDFYDLPDTGASARGA
Ga0187819_106285722	3300017943	Freshwater Sediment	DLALRRAVLPERRTGVTLGHMQVLTNVLNAGATTRGA
Ga0190266_109805972	3300017965	Soil	AVAAVLPGQGNEVGSQPFFVGAAPRHLALRRAVLPERRTSTALGDMHDVFNLLDTGAAACGAQ
Ga0187780_113096581	3300017973	Tropical Peatland	LALRRAVLPERRTSATLGDMHDFSDLLDTGAATRGA
Ga0187784_100871817	3300018062	Tropical Peatland	LALRRAVLPERRTGAALGDIHDLSDLLDTGTAARGA
Ga0184617_12258851	3300018066	Groundwater Sediment	FFVGAAPRHLALRRAVLPERRTSTALGDMHDFFDLLDTGAAACGAQ
Ga0194111_108942571	3300020083	Freshwater Lake	AIAAIQPGQRKGVGGEPLFVITAPRDLALCRAVLPERRTGATLGDMQDFTDLLDTGAATRGA
Ga0194131_101301931	3300020193	Freshwater Lake	QQTGDLAIAIAAIQPGQRKGVGGEPLFVITAPRDLALCRAVLPERRTGATLGDMQDFTDLLDTGAATRGA
Ga0247788_11198872	3300022901	Soil	AAVLPGQGDEVGGQSFFVGTAPRHLALRRAVLPERRASTALGYMHDFFDVLDTGAAACGA
Ga0247800_11347962	3300023263	Soil	AVAAVLPGQGNEVGGQPFFVGAAPRHLALRRAVLSERRTSTALGDMHDFFDLLDIGAAACGAQ
Ga0207928_10755931	3300025494	Arctic Peat Soil	DLALCRAMLPERRTGAALGDMHDFYNLLDTGAAARGA
Ga0209014_100178781	3300025857	Arctic Peat Soil	LALRRAVLPERRTSAALGDMQMISDMLDAGTATRGAQ
Ga0209585_104619192	3300025891	Arctic Peat Soil	AAVLAGQRNNVGGEQLFVITAPRDLALCRAMLPERRTGAALGDMHDFYNLLDTGAAARGA
Ga0207680_112314362	3300025903	Switchgrass Rhizosphere	AAVLPGQGDEVGGQSFFVGTAPRHLALRRAVLPERRASTALGDMHDFFDVLDTGAAACGA
Ga0207669_116205712	3300025937	Miscanthus Rhizosphere	DLAIAVAAVLPGQGDEVGGQSFFVGTAPRHLALRRAVLPERRASTALGDMHDFFDVLDTGAAACGA
Ga0207668_120935923	3300025972	Switchgrass Rhizosphere	DGVGSEPLFVFTAPRYLALRRTVLSERRTGAALGDRHDRLDLLDTGATTRGA
Ga0208540_10439352	3300026059	Natural And Restored Wetlands	PVAAVLPGQCDEVGRQLFFVITAPRYLALRRAMLPERRTGAALGDMHDLSDLLDTGAATRGA
Ga0209847_10802231	3300026276	Permafrost Soil	AAVLAGQRNNVGGEPLFVITAPRDLALCRAMLPERRTGAALGDMHDFYNLLDTGAAARGA
Ga0207742_1050333	3300026800	Tropical Forest Soil	GMAACAFSALVGGEPLFVFSAPRYLALCRAMLPERRTGAALGDMHDFSDLLDIGASARGA
Ga0207760_1195811	3300026845	Tropical Forest Soil	LVGGEPLFVFSAPRYLALCRAMLPERRTGAALGDMHDFSDLLDIGASARGA
Ga0207787_10310672	3300026908	Tropical Forest Soil	AGQCDNVGGEPLFVFSAPRYLALCRAMLPERRTGAALGDMHDFSDLLDIGASARGA
Ga0207858_10280763	3300026909	Tropical Forest Soil	RYLALRRAVLPERHTSAALGDRHDFYDLLDTGAATRGA
Ga0207776_10164391	3300027035	Tropical Forest Soil	VGGEPLFVFSAPRYLALCRAMLPERRTGAALGDMHDFSDLLDIGASARGA
Ga0207467_10069261	3300027036	Soil	VLPGQGDEVGGQSFFVGTAPRHLALRRAVLPERRASTALGDMHDFFDVLDTGAAACGA
Ga0207601_1124451	3300027461	Soil	LFIGTAPRHLALRRAVLPERRTGTALGDMHDFFDLLDTRAAACGAQ
Ga0208993_11003872	3300027480	Forest Soil	VGGEPLFVFTAPRYLALRRAVLSERRTGAALGDMHDRLDLLDTGATTRGA
Ga0208199_11258351	3300027497	Peatlands Soil	AAVLPGKLDDVGGELLFVFTAPRCLALRRAVLPERRTGAALGDMQMRSDLLDTGAPTRGA
(restricted) Ga0247833_13308711	3300027730	Freshwater	SNDIGGEPLFIVTAPRDLALCRAMLPERHTGAALGDMHDLYNLLDTGASARGA
Ga0209040_104928591	3300027824	Bog Forest Soil	PRHLALCRAVLPERRTGAALGDMHDLSDLLDTGTATRGA
Ga0209048_110010151	3300027902	Freshwater Lake Sediment	ISAPRYLALRRAVLPERRTGAALGDMHDFYDLLDTGAAARGA
Ga0209583_103896061	3300027910	Watersheds	GDEVGGQPFFVGTAPRHLALRRAVLPERRTGTALGDMHDFFDLLDTGAAACGAQ
Ga0209069_105646341	3300027915	Watersheds	AIAVAAVESSQCDHIGGETFFVISAPRDLALCRAVLPERRTGAALGDMQDFSDLLDTGAAARGA
Ga0247821_112813732	3300028596	Soil	PRRLALRRAVLPERRTGTALGDMHDFFDLLDTRAAACGAQ
Ga0311337_109249381	3300030000	Fen	AVAAVLSGQCDQIGRQLIFVVAAPRYLALCRAVLPERRTSAALGDIHGGLDMLDTGAATRGAQ
Ga0310039_100705941	3300030706	Peatlands Soil	LALRRAVLPERRTGAALGDMQMRSDLLDTGAATRGA
Ga0170834_1035726231	3300031057	Forest Soil	VVTAPRCLALRRAVLPERRTSAALGDMQMRSDLLDTGAATRGA
Ga0307440_11640561	3300031367	Salt Marsh	PRYLALRRAVLPERRTSAALGDMHDFYDLLDTGASARGA
Ga0170819_131940832	3300031469	Forest Soil	GVGSEPLFVFTAPRYLALRRTVLSERRTGAPLGDMHDRLDLLDTGATTRGA
Ga0307419_102032551	3300031537	Salt Marsh	VFVSTAPRDLALCRAMLPERRTGTALGDMHDLSDLLDTSAATRGA
Ga0316579_102468052	3300031691	Rhizosphere	QCDEIGRQLFFVITAPRYLALRRAMLPERRTGAALGDMHDLSDLLDTGAATRGA
Ga0310686_1123845731	3300031708	Soil	PRYLALRRAVLPERRTGAALGDLHDCSDLLDTGAATRGA
Ga0306917_113906561	3300031719	Soil	FALRRAVLPERRTGATFGNMQLRADLLNAGAATRGA
Ga0308175_1032641511	3300031938	Soil	EVGGQPFFVGTAPRHLALRRAVLPERRASTALGDMHDFFDVLDAAAAARGAQ
Ga0311301_111917793	3300032160	Peatlands Soil	LPGQCDGVGGEPLFVFTAPRYLALRRAVLPERRTGAALGDMHDFSYLLDTGAATRGA
Ga0315276_126125541	3300032177	Sediment	DVGGQPLLVFTAPRHLALRRAMLPERRTSAALGDMQVMSDVLDTGAATRGA
Ga0335082_116383591	3300032782	Soil	LSGQGNEVGSQPFFVGTAPRHLALRRAVLPERRASTALGDMHDFFDVLYTGAAACGAQ
Ga0247829_111864681	3300033550	Soil	AAVLSGQRDGIGDEPFFVITAPRYLALGRAVLPERRTGAALGDMHDFSDLLDTGAATRGA
Ga0370545_110003_446_607	3300034643	Soil	CDGVGSEPLFVFTAPRYLALRRTVLSERRTGAPLGDRHDRLDLLDTGATTRGA
Ga0370548_088956_3_170	3300034644	Soil	GQCDGVGSEPLFVFTAPRYLALRRTVLSERRTGAPLGDMHDRLDLLDTGATTRGA

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.27
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.27
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F097461

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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