Sample 3300000702

Overview

Basic Information
IMG/M Taxon OID	3300000702 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0075432 \| Gp0054410 \| Ga0002000
Sample Name	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 77
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	10661129
Sequencing Scaffolds	13
Novel Protein Genes	13
Associated Families	13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	2
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1
All Organisms → cellular organisms → Bacteria	1
Not Available	6
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Isosphaerales → Isosphaeraceae → Aquisphaera → Aquisphaera giovannonii	1
All Organisms → cellular organisms → Bacteria → Acidobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	forest biome → tropical forest → forest soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Luquillo Experimental Forest Soil, Puerto Rico
Coordinates	Lat. (^o)	18.0	Long. (^o)	-65.0	Alt. (m)	N/A	Depth (m)	.1
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F000800	Metagenome / Metatranscriptome	886	Y
F006756	Metagenome / Metatranscriptome	365	Y
F007624	Metagenome / Metatranscriptome	348	N
F027877	Metagenome	193	Y
F029309	Metagenome	188	Y
F032469	Metagenome / Metatranscriptome	180	Y
F034030	Metagenome / Metatranscriptome	175	Y
F035932	Metagenome	171	Y
F040358	Metagenome / Metatranscriptome	162	N
F058548	Metagenome / Metatranscriptome	135	Y
F059236	Metagenome / Metatranscriptome	134	N
F063348	Metagenome	129	N
F078037	Metagenome	116	N

Family

Category

Number of Sequences

3D Structure?

F000800

Metagenome / Metatranscriptome

886

F006756

Metagenome / Metatranscriptome

365

F007624

Metagenome / Metatranscriptome

348

F027877

Metagenome

193

F029309

Metagenome

188

F032469

Metagenome / Metatranscriptome

180

F034030

Metagenome / Metatranscriptome

175

F035932

Metagenome

171

F040358

Metagenome / Metatranscriptome

162

F058548

Metagenome / Metatranscriptome

135

F059236

Metagenome / Metatranscriptome

134

F063348

Metagenome

129

F078037

Metagenome

116

Scaffold	Taxonomy	Length	IMG/M Link
JGI12537J11925_100183	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2030	Open in IMG/M
JGI12537J11925_100417	All Organisms → cellular organisms → Bacteria → Proteobacteria	1581	Open in IMG/M
JGI12537J11925_100423	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1575	Open in IMG/M
JGI12537J11925_100425	All Organisms → cellular organisms → Bacteria	1574	Open in IMG/M
JGI12537J11925_101483	Not Available	972	Open in IMG/M
JGI12537J11925_102081	Not Available	804	Open in IMG/M
JGI12537J11925_102562	All Organisms → cellular organisms → Bacteria → Proteobacteria	716	Open in IMG/M
JGI12537J11925_103134	Not Available	639	Open in IMG/M
JGI12537J11925_103707	Not Available	584	Open in IMG/M
JGI12537J11925_103881	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Isosphaerales → Isosphaeraceae → Aquisphaera → Aquisphaera giovannonii	569	Open in IMG/M
JGI12537J11925_104003	All Organisms → cellular organisms → Bacteria → Acidobacteria	559	Open in IMG/M
JGI12537J11925_104012	Not Available	558	Open in IMG/M
JGI12537J11925_104472	Not Available	526	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

JGI12537J11925_100183

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales

2030

Open in IMG/M

JGI12537J11925_100417

All Organisms → cellular organisms → Bacteria → Proteobacteria

1581

Open in IMG/M

JGI12537J11925_100423

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium

1575

Open in IMG/M

JGI12537J11925_100425

All Organisms → cellular organisms → Bacteria

1574

Open in IMG/M

JGI12537J11925_101483

Not Available

972

Open in IMG/M

JGI12537J11925_102081

Not Available

804

Open in IMG/M

JGI12537J11925_102562

All Organisms → cellular organisms → Bacteria → Proteobacteria

716

Open in IMG/M

JGI12537J11925_103134

Not Available

639

Open in IMG/M

JGI12537J11925_103707

Not Available

584

Open in IMG/M

JGI12537J11925_103881

All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Isosphaerales → Isosphaeraceae → Aquisphaera → Aquisphaera giovannonii

569

Open in IMG/M

JGI12537J11925_104003

All Organisms → cellular organisms → Bacteria → Acidobacteria

559

Open in IMG/M

JGI12537J11925_104012

Not Available

558

Open in IMG/M

JGI12537J11925_104472

Not Available

526

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
JGI12537J11925_100183	JGI12537J11925_1001831	F058548	DGCQIAPKYDPLFAAKNDPFDGAETGGAEAHIAEQSRSWRAASGERAVMRGS*
JGI12537J11925_100417	JGI12537J11925_1004171	F032469	MRSFDRDLIRGGHYGQRSCEPHLKAEHMAAPTKPAT*
JGI12537J11925_100423	JGI12537J11925_1004231	F007624	LFEPMQLREGSFHGPRPTCPKHPKQRVHRHGFYVRFENCDSQRRLRIERFVCPRCGRTLSVLPKNRLPYVAVNTTILESDFDARASGTDPPSCSEKERGCLGRAFERFADRVAPLCALLGQMIRGIKPSVSECWRALRQLDNLEGILLLLGTKFNTSLLADYRCLQPGF*
JGI12537J11925_100425	JGI12537J11925_1004253	F040358	SDDKRPLANIILHGSNTMRIAIFALAVLAGGGAAEAGQIEVISASPRHIEIAAWCWTAGSNCQQEASDVAQGYCHGSDYPDYPRRALYVRSGLVERGFFSERVIFVYRCNRRSIICEAGSC*
JGI12537J11925_101483	JGI12537J11925_1014831	F029309	MIHKVRINKKYPFKQMSPGETFKLNELDVRGAQKLAYYYRSLCKRPIQVVVTK
JGI12537J11925_102081	JGI12537J11925_1020811	F027877	MGYNARNDEIHENVERMRREREAYEDSLAIVRQFNARLSAKRPHGSGRQ*
JGI12537J11925_102562	JGI12537J11925_1025621	F035932	PVGLPGAQQLVVVEKDLSGRVTTKEIMPVLFSVLEESDQPAFRAS*
JGI12537J11925_103134	JGI12537J11925_1031341	F063348	MAHLRMKKTGVGFRNMTLSPVRQAEIEDLALRFRDEMKAEILKHRGSNAVGVVDSFVVNIEAHRARYAKKLDAIRAGADAATIFIADEVGREIDALATSVEFGPGAADHQIPLEIHKIGLSDNQLEVIMRTAEPMAKEKCQEFLQRVAAVLPVRSQINDDEISVAVHRALRDIIRNSAAWKEWNQNSPPTLQDGQVSDAA*
JGI12537J11925_103707	JGI12537J11925_1037071	F078037	MDVKLITAILVTAATASAALAQGPSTEKLKADAQEVVKIISSDSAKAQAYCETIKLGDQMDQAEQNNDSDKAEGLSNKIDELNQKLGPEYLKLGQDLQDIDPNSPDGLELGRTLAAL
JGI12537J11925_103881	JGI12537J11925_1038811	F059236	MVSLRQESFGKEEETRTLKPFVETLRVRIPPGKAGPAARSESCVVVGQLILRSVDSEVKGRVIEPRKYKPRGAFVLDTGGGRVRQLTHGPLSLPDPAGVEEHGQ*
JGI12537J11925_104003	JGI12537J11925_1040032	F006756	RELAEQRPAARRSQAQRRFLDFLDGLCAPDVAEGYLRGVADSDRALSRQLNELLELIRQYGPEAVAGALAKAYTARAFGADYIANILRQQQTPRRPQPPLRLRDPRLNELATDPLSLLAYDAFILESGKESDDSARETGSTEPVDDEPST*
JGI12537J11925_104012	JGI12537J11925_1040121	F000800	MEVLLESEQQMGRNKRKVKRQRPNGPPALSPAAVADQTGRLLTEREADWLERLVDDPASFAAVEREVHDQARRQADLYVAGLLAKASEHSEMAQHIDKVTAEAEVPLRPVEKKDAPWWCGFLGAWRSR*
JGI12537J11925_104472	JGI12537J11925_1044721	F034030	VIAGCVAAVTSADLALAQAKNSTSMEDRLSAKIRCQDFQKNSDGKWTSSSKAKIGKIDFSNHTFGVDEVDIGGADLATFLNRKCAAH*

Scaffold ID

Protein ID

Family

Sequence

JGI12537J11925_100183

JGI12537J11925_1001831

F058548

DGCQIAPKYDPLFAAKNDPFDGAETGGAEAHIAEQSRSWRAASGERAVMRGS*

JGI12537J11925_100417

JGI12537J11925_1004171

F032469

MRSFDRDLIRGGHYGQRSCEPHLKAEHMAAPTKPAT*

JGI12537J11925_100423

JGI12537J11925_1004231

F007624

LFEPMQLREGSFHGPRPTCPKHPKQRVHRHGFYVRFENCDSQRRLRIERFVCPRCGRTLSVLPKNRLPYVAVNTTILESDFDARASGTDPPSCSEKERGCLGRAFERFADRVAPLCALLGQMIRGIKPSVSECWRALRQLDNLEGILLLLGTKFNTSLLADYRCLQPGF*

JGI12537J11925_100425

JGI12537J11925_1004253

F040358

SDDKRPLANIILHGSNTMRIAIFALAVLAGGGAAEAGQIEVISASPRHIEIAAWCWTAGSNCQQEASDVAQGYCHGSDYPDYPRRALYVRSGLVERGFFSERVIFVYRCNRRSIICEAGSC*

JGI12537J11925_101483

JGI12537J11925_1014831

F029309

MIHKVRINKKYPFKQMSPGETFKLNELDVRGAQKLAYYYRSLCKRPIQVVVTK

JGI12537J11925_102081

JGI12537J11925_1020811

F027877

MGYNARNDEIHENVERMRREREAYEDSLAIVRQFNARLSAKRPHGSGRQ*

JGI12537J11925_102562

JGI12537J11925_1025621

F035932

PVGLPGAQQLVVVEKDLSGRVTTKEIMPVLFSVLEESDQPAFRAS*

JGI12537J11925_103134

JGI12537J11925_1031341

F063348

MAHLRMKKTGVGFRNMTLSPVRQAEIEDLALRFRDEMKAEILKHRGSNAVGVVDSFVVNIEAHRARYAKKLDAIRAGADAATIFIADEVGREIDALATSVEFGPGAADHQIPLEIHKIGLSDNQLEVIMRTAEPMAKEKCQEFLQRVAAVLPVRSQINDDEISVAVHRALRDIIRNSAAWKEWNQNSPPTLQDGQVSDAA*

JGI12537J11925_103707

JGI12537J11925_1037071

F078037

MDVKLITAILVTAATASAALAQGPSTEKLKADAQEVVKIISSDSAKAQAYCETIKLGDQMDQAEQNNDSDKAEGLSNKIDELNQKLGPEYLKLGQDLQDIDPNSPDGLELGRTLAAL

JGI12537J11925_103881

JGI12537J11925_1038811

F059236

MVSLRQESFGKEEETRTLKPFVETLRVRIPPGKAGPAARSESCVVVGQLILRSVDSEVKGRVIEPRKYKPRGAFVLDTGGGRVRQLTHGPLSLPDPAGVEEHGQ*

JGI12537J11925_104003

JGI12537J11925_1040032

F006756

RELAEQRPAARRSQAQRRFLDFLDGLCAPDVAEGYLRGVADSDRALSRQLNELLELIRQYGPEAVAGALAKAYTARAFGADYIANILRQQQTPRRPQPPLRLRDPRLNELATDPLSLLAYDAFILESGKESDDSARETGSTEPVDDEPST*

JGI12537J11925_104012

JGI12537J11925_1040121

F000800

MEVLLESEQQMGRNKRKVKRQRPNGPPALSPAAVADQTGRLLTEREADWLERLVDDPASFAAVEREVHDQARRQADLYVAGLLAKASEHSEMAQHIDKVTAEAEVPLRPVEKKDAPWWCGFLGAWRSR*

JGI12537J11925_104472

JGI12537J11925_1044721

F034030

VIAGCVAAVTSADLALAQAKNSTSMEDRLSAKIRCQDFQKNSDGKWTSSSKAKIGKIDFSNHTFGVDEVDIGGADLATFLNRKCAAH*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300000702: Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 77

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences