3300000482: Anaerobic digester microbial communities from Northern Denmark, sample from Lynggard manure

Overview

Basic Information

• IMG/M Taxon OID: 3300000482
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0074283 | Gp0054631 | Ga0011569
• Sample Name: Anaerobic digester microbial communities from Northern Denmark, sample from Lynggard manure
• Sequencing Status: Permanent Draft
• Sequencing Center: Aalborg University
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 82793154
• Sequencing Scaffolds: 24
• Novel Protein Genes: 34
• Associated Families: 30

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	6
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon	3
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	3
All Organisms → cellular organisms → Archaea → Euryarchaeota	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruthenibacterium → Ruthenibacterium lactatiformans	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin028	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Dysgonomonadaceae → Dysgonomonas	1
All Organisms → cellular organisms → Bacteria → Synergistetes → unclassified Synergistota → Synergistetes bacterium ADurb.BinA166	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → Viruses → Predicted Viral	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Anaerobic Digester Microbial Communities From Soeholt, Denmark
• Type: Engineered
• Taxonomy: Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Digester → Anaerobic Digester Microbial Communities From Soeholt, Denmark

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Soeholt, Denmark
• Coordinates
  • Lat. (^o): 56.446744
  • Long. (^o): 9.372697
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003987	Metagenome / Metatranscriptome	458	Y
F004383	Metagenome / Metatranscriptome	440	Y
F011593	Metagenome / Metatranscriptome	289	Y
F014002	Metagenome / Metatranscriptome	266	Y
F022442	Metagenome / Metatranscriptome	214	Y
F022893	Metagenome / Metatranscriptome	212	N
F023320	Metagenome / Metatranscriptome	210	N
F027161	Metagenome / Metatranscriptome	195	Y
F030054	Metagenome / Metatranscriptome	186	Y
F031138	Metagenome / Metatranscriptome	183	Y
F033394	Metagenome / Metatranscriptome	177	N
F033483	Metagenome / Metatranscriptome	177	Y
F034940	Metagenome / Metatranscriptome	173	Y
F042860	Metagenome / Metatranscriptome	157	Y
F043951	Metagenome / Metatranscriptome	155	N
F045597	Metagenome / Metatranscriptome	152	Y
F053364	Metagenome / Metatranscriptome	141	Y
F054970	Metagenome / Metatranscriptome	139	Y
F057301	Metagenome / Metatranscriptome	136	N
F065565	Metagenome / Metatranscriptome	127	N
F072475	Metagenome / Metatranscriptome	121	N
F074840	Metagenome / Metatranscriptome	119	N
F081238	Metagenome / Metatranscriptome	114	Y
F085052	Metagenome / Metatranscriptome	111	N
F087243	Metagenome / Metatranscriptome	110	Y
F092293	Metagenome / Metatranscriptome	107	N
F093744	Metagenome / Metatranscriptome	106	Y
F101009	Metagenome / Metatranscriptome	102	Y
F101100	Metagenome / Metatranscriptome	102	N
F103106	Metagenome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Lynggard_1002875	Not Available	2167
Lynggard_1003626	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium	1384
Lynggard_1005767	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon	5813
Lynggard_1006476	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1013
Lynggard_1006999	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	1193
Lynggard_1007235	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2539
Lynggard_1007950	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon	2783
Lynggard_1008360	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon	1320
Lynggard_1008725	All Organisms → cellular organisms → Archaea → Euryarchaeota	3796
Lynggard_1009058	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruthenibacterium → Ruthenibacterium lactatiformans	3261
Lynggard_1009989	All Organisms → cellular organisms → Archaea → Euryarchaeota	2780
Lynggard_1013537	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	1086
Lynggard_1013597	Not Available	1294
Lynggard_1014138	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin028	3020
Lynggard_1015986	Not Available	1030
Lynggard_1016058	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2126
Lynggard_1016271	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Dysgonomonadaceae → Dysgonomonas	1993
Lynggard_1016888	All Organisms → cellular organisms → Bacteria → Synergistetes → unclassified Synergistota → Synergistetes bacterium ADurb.BinA166	1579
Lynggard_1016918	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1414
Lynggard_1020615	All Organisms → cellular organisms → Bacteria	1324
Lynggard_1022021	Not Available	1388
Lynggard_1022337	All Organisms → Viruses → Predicted Viral	1090
Lynggard_1024283	Not Available	1422
Lynggard_1024615	Not Available	1048

Sequences

Scaffold ID	Protein ID	Family	Sequence
Lynggard_1002875	Lynggard_10028752	F004383	MTCDCEIPCRECKEGGSEYCTDPAECDHAVLPSSDNLLEQAFMARIRADEHREALAALQQEFDERPDVIEIKRLIDRCEEERRQAIAKAQEQGVTKQGSFLLKIRTRKQRTVVPERFFARFGAETFVRCSTVAIGKAEALLGKGTFDDCCEVAVKETGVSVEYVRPEGSE*
Lynggard_1002875	Lynggard_10028753	F031138	MTKRNNYVGPCATARIPEAGTDAQNGTFDRIIVAAAEHSAHEAGLPGRADRMIACRSCGAPTANCDGICPACAEALRVERAAALAERCRIHRVRYVEDLPVSVLEEMQAEWGRC*
Lynggard_1003626	Lynggard_10036263	F081238	VISGGQGWKRRRRTDVRVAAKPFYADYVNRLMRWYCRAKEQGKEVNLDSALDRENWNAVAKVVERLNEENRCAIMKVYCKRDTMVDNVRLTAVELGWEQDRLWALVSRVTRKVAEERGLV
Lynggard_1005767	Lynggard_100576710	F043951	MEHLSLGRPIEASLGPRYQCPMCGLKLWTIQAPWTGWQEWYRTEDGRRHYKHRCNIMEDALVMFRWMFGQDW*
Lynggard_1005767	Lynggard_100576711	F101100	MKPVFRVESANEEVVRGGWYLLADSLAAAREVYPAHLFPSMTFIEVGKGLCVECNRRAVDALVEER*
Lynggard_1005767	Lynggard_100576712	F034940	MGNDCWYYRAQYAGMTKVCMRKSIVECGRIRRFGLCPKPPDSEEWRRCGFAIGQHEIPLMVEE*
Lynggard_1006476	Lynggard_10064763	F085052	MSEPTLQQEIEARRPATEGTLRQLASVYVDSVAIIASAQAMMGSVEQIFADTGTAMNSLKSAIETAQLAMLSAKESMDSAKTAFDGIMVDEGVGLNG*
Lynggard_1006999	Lynggard_10069991	F022442	VTFLPAGEARLDLYTDAMLLDIGPDTFVVPLARLADLTAHRRREVVVSRRYWGDAPGTFRDVEQGLRLRRSQTDRSLMLTEQGRVYSIPVYPVLEVKDGIRESCTISMLVTDARQLDD
Lynggard_1006999	Lynggard_10069993	F053364	VSDPLNDILVECCKLRGCYPLMHRTLHEFNWFCNCAIGGAGPFIDGEIATAEADGDEALAGVLKDRRNEENGIRDRFGEWYSHGSDELIRLAEAFRIYCREQYGDEEVGS*
Lynggard_1007235	Lynggard_10072352	F045597	MFDVRIAKPPTLISDSAGHGSRRTYAAVARVMSQGRGFLDVVAVYCHGYCDQHEDAESLDRLLGLLLVSAPVNTFPQLTLARFPEDLPADWEAAWDAVEAAVLALPE*
Lynggard_1007950	Lynggard_10079503	F072475	MSESFASRFMSPDEKRAMIARDPQSAQALHNGPRTGFAHNCYAGGLGMFFQKTIKNTILEKFLDQAWQGFLKYRCAGSKAAYREAKKNPDAVFQYDDPLLALLNRVMKESIVENHTDNDAARKQQLMRQATDITLTLLNEDIYYRARCKEHLRDILAAVAEHPEYLDLSLEEEQNIRRWNGCSP*
Lynggard_1008360	Lynggard_10083602	F092293	MTRPPTLTDRQIQIIRENLDLFPADILKLPEFADADVTRHTIRNYQRRMKREIEPDDETALATYLRKYISRHGLESRFHGPRGVTGFLSHLEKQIQIRANGKADVESEVE*
Lynggard_1008725	Lynggard_10087253	F011593	MVDDNNLAAPEWCLGCPHPIYDDRRGEWDWYCRQHSPTGIRCSNVAVLRERCYRVRDYFSNREVAL*
Lynggard_1009058	Lynggard_10090584	F093744	MPLRVGDRVEVSYPVDDFPGHVGIVREIKESTEFPGKIIVVCYWPFLDKEIAFFEDSLDLV*
Lynggard_1009058	Lynggard_10090585	F045597	MKFDVHMVKPPTLISDSAGHGSRRTYAAVARVSRSSGGFMDVVAAYSRGYCDQHEEVESLDRLLGLLVVSAPVSNPRLTLAQFPEDLPTGWEDAWEAVEAAVLALPE*
Lynggard_1009989	Lynggard_10099891	F087243	QERIALPEWWQQCTRNAAAEGLAPLLVLKQSRREPLAVLRWTDLLSLLRHDHRWENLAEGLTGGRP*
Lynggard_1013537	Lynggard_10135371	F103106	MSDIKKVIEGLELIEIVVPSYKHARRKGITDDEAETLVNWALEQAIIILEQLIGATDE*
Lynggard_1013597	Lynggard_10135973	F054970	MTKNXXXXXXXQKIVENLLIDLEQNQDCDNWKCEECPFHLKDVEEDPYYGKHTCGWFLLKSAASKILRK*
Lynggard_1014138	Lynggard_10141382	F023320	MKVYKALTFEVDLSGLGKEQWIQEELDYDTIAQKIIDTLIDVMREKDVEASSNLIQSLEPETKNGEIVIYADYYWKFIDKGVNGLMQSRDSEFSFKFVPASKKHALSIAKWLEFRGLATEFTTLADAYRVATATKIKGIRGRKFVEEFEKELDNIEII*
Lynggard_1014138	Lynggard_10141384	F022893	MKLKKAKKLTISYKVKVKHFEDFLLLCSYDKKDIDGFINLLSKCTEVDKEIFYNLKFADLIRFVDELVDSVDKEMYKAPKKAIKINDRYYKLIDLLNLQVAFYVDFDLVEKTPSYLLALCYTETGSYTDERNSSVDEREKIMQNADIIDYMRLANFFLTWRDFLKKLKEIQKN*
Lynggard_1015986	Lynggard_10159861	F045597	MRFTVWITKPPTLISDSAGHGSRRTYAAVARVRCQGKGFMDVVAVYSLGYCDQHEEVESLDRLLSLLVVSAPVSFTQITLARFPEELPTGWEEAWEAVEAAVLALPE*
Lynggard_1016058	Lynggard_10160584	F033483	VTPGDACVALDIDGLPVVLVLPERDVELMMWPYWVNRILQEGHGDE*
Lynggard_1016271	Lynggard_10162711	F014002	EIIGIITLLIAIISGYVNIKIQITKLVEENKTLTEKINNLDKKLSEICSKVDKIKINLAKKGLNDNE*
Lynggard_1016271	Lynggard_10162712	F027161	MNEYIRLIIDNLDVSYICSVMLLGYMITKSKLITKIKLQKRWIILIIGVIVAVIYYFFIKIRLDILFFSFITAQFLNLYVTEYLIDYLIKKLGSLTKKTN*
Lynggard_1016271	Lynggard_10162714	F030054	MNKREKKLFFVILVLLAAILFNIESIKKKNSIINTNKELINSYKERINNSNLAIDSLQNAIKQAKKVDTVIKIRYKQKIDSIYVYKYDDYISFYDTLLHTNLLKSDTFICFDSINIQKLTTKIVKCERDSELLANCYVENNLYNNIIKNQDSVILLQDSINTTLQTNCDKKVKKVKKQRNIAIGVAF
Lynggard_1016888	Lynggard_10168883	F031138	MMKRNNYVGPCAAACKPGAGTDTQNGTFDYIIVAAAEHAAREAGLPGRADRMIACRSCGAPTASSDGICRDCAEALREERADVLEGRCRIHRVRYVDDLPVSVLQEMQAEWGRC*
Lynggard_1016888	Lynggard_10168885	F004383	MSDDNLLEQAFMARIRADEYREKLAKLREEFESSPEVMELNLSIERCEEERRQCIEQAKAAGISKQGSFRLKVRTRKTRTVIPERFFAKHGAEAFVECATIAIGKAEALLGKAALDDCCEVEVKEIGVSVEYERPEGSK*
Lynggard_1016888	Lynggard_10168886	F003987	VIPALPCGTFSDSDTPVGAFFVAAFEDGDQPHHVGEYRIETLVRALRALQACGYDDVEIGSIFAPDPEHVHLLLIGLDGEARFGDRQLGC
Lynggard_1016918	Lynggard_10169181	F042860	MARMTREEILKRIEIEDIRIASADRNIEGLILQKNKSLDEQARLFALLEALPDEEPTTEA
Lynggard_1020615	Lynggard_10206152	F065565	MSFLKVLNILVTAAGFIIPLALLLEAEELPGEEKKKAVLAQLKAQLDSLGLEFPQWLQKFIDPILGLLIDAVVFWLNKIGFFEHGSESSEG*
Lynggard_1022021	Lynggard_10220214	F101009	MEPLKCEQCGNRPGLLVPVTDRAAGTNINLCYECYKNYARNVKDGKAEHVTIVYEEGVSAR*
Lynggard_1022337	Lynggard_10223373	F074840	MLELNKNELAQFNQFIQRHERCFDDNKYELTVHLHIIGTGIGNVYEAECEHCGE
Lynggard_1024283	Lynggard_10242832	F057301	MYDSNPNMPTPFGAPKDNDDEFSVDLSEAPTGGGYLIPDGDYPAVLVDLRKGFSKSGNPQWIWTFAIMNGEHAGKEFPLYTAITPSALWKVAETVEALGLGKGGTVSKFTKNDALFRRCIISIRKDTYNGQERSSITKALPHPDGPGPVTGFNPKKASDDPVPF*
Lynggard_1024615	Lynggard_10246152	F033394	MKSIYIYFVDEKADIYYKDNSKNLHCTINLYTTNKEIRAQFRKNLLERYWDKIEITDINDLKMIVKDSFVQIFTLQREKIDKND*