3300000324: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 48 08/11/10 100m

Overview

Basic Information

• IMG/M Taxon OID: 3300000324
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046785 | Gp0053416 | Ga0026472
• Sample Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 48 08/11/10 100m
• Sequencing Status: Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 174860176
• Sequencing Scaffolds: 37
• Novel Protein Genes: 39
• Associated Families: 38

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	3
All Organisms → Viruses → Predicted Viral	3
All Organisms → cellular organisms → Bacteria → Proteobacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → unclassified Nitrosomonadales → OM43 clade → Methylophilales bacterium HTCC2181	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Nitrosopumilus maritimus	1
Not Available	17
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	1
All Organisms → cellular organisms → Archaea	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2
All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal inlet → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Saanich Inlet 48, Vancouver Island, BC, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Alt. (m): N/A
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000926	Metagenome / Metatranscriptome	832	Y
F004071	Metagenome / Metatranscriptome	454	Y
F005012	Metagenome / Metatranscriptome	415	Y
F005848	Metagenome / Metatranscriptome	388	Y
F009681	Metagenome	314	N
F009761	Metagenome / Metatranscriptome	313	Y
F011521	Metagenome / Metatranscriptome	290	N
F012817	Metagenome / Metatranscriptome	277	N
F013575	Metagenome	270	Y
F014325	Metagenome / Metatranscriptome	264	Y
F014445	Metagenome / Metatranscriptome	263	Y
F016736	Metagenome / Metatranscriptome	245	Y
F016814	Metagenome / Metatranscriptome	244	N
F017636	Metagenome / Metatranscriptome	239	Y
F023872	Metagenome	208	Y
F024324	Metagenome / Metatranscriptome	206	N
F029239	Metagenome / Metatranscriptome	189	Y
F029559	Metagenome / Metatranscriptome	188	Y
F033071	Metagenome	178	Y
F034189	Metagenome / Metatranscriptome	175	Y
F039105	Metagenome / Metatranscriptome	164	Y
F044364	Metagenome	154	N
F046632	Metagenome / Metatranscriptome	151	Y
F050420	Metagenome / Metatranscriptome	145	N
F057661	Metagenome / Metatranscriptome	136	Y
F061978	Metagenome	131	N
F066454	Metagenome / Metatranscriptome	126	N
F069322	Metagenome / Metatranscriptome	124	N
F073088	Metagenome	120	N
F073263	Metagenome / Metatranscriptome	120	N
F077377	Metagenome / Metatranscriptome	117	N
F085651	Metagenome / Metatranscriptome	111	N
F088272	Metagenome / Metatranscriptome	109	Y
F093660	Metagenome	106	N
F096496	Metagenome	104	N
F098669	Metagenome / Metatranscriptome	103	N
F100510	Metagenome / Metatranscriptome	102	Y
F102550	Metagenome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
SI48aug10_100mDRAFT_1002299	All Organisms → cellular organisms → Bacteria	5925
SI48aug10_100mDRAFT_1005031	All Organisms → Viruses → Predicted Viral	3715
SI48aug10_100mDRAFT_1005268	All Organisms → cellular organisms → Bacteria → Proteobacteria	3602
SI48aug10_100mDRAFT_1008587	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → unclassified Nitrosomonadales → OM43 clade → Methylophilales bacterium HTCC2181	2615
SI48aug10_100mDRAFT_1010092	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Nitrosopumilus maritimus	2352
SI48aug10_100mDRAFT_1011850	Not Available	2100
SI48aug10_100mDRAFT_1012296	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2045
SI48aug10_100mDRAFT_1013370	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1921
SI48aug10_100mDRAFT_1015776	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	1678
SI48aug10_100mDRAFT_1018517	Not Available	1481
SI48aug10_100mDRAFT_1019073	All Organisms → Viruses → Predicted Viral	1446
SI48aug10_100mDRAFT_1026176	Not Available	1099
SI48aug10_100mDRAFT_1028677	All Organisms → cellular organisms → Archaea	1017
SI48aug10_100mDRAFT_1028909	All Organisms → cellular organisms → Bacteria → Proteobacteria	1010
SI48aug10_100mDRAFT_1029015	All Organisms → Viruses → Predicted Viral	1007
SI48aug10_100mDRAFT_1030102	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	976
SI48aug10_100mDRAFT_1033347	Not Available	894
SI48aug10_100mDRAFT_1034337	All Organisms → cellular organisms → Archaea	873
SI48aug10_100mDRAFT_1038595	Not Available	792
SI48aug10_100mDRAFT_1042600	Not Available	730
SI48aug10_100mDRAFT_1043252	Not Available	721
SI48aug10_100mDRAFT_1044032	Not Available	710
SI48aug10_100mDRAFT_1044137	Not Available	709
SI48aug10_100mDRAFT_1045455	Not Available	693
SI48aug10_100mDRAFT_1046983	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	675
SI48aug10_100mDRAFT_1047562	Not Available	669
SI48aug10_100mDRAFT_1047697	Not Available	667
SI48aug10_100mDRAFT_1048807	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	655
SI48aug10_100mDRAFT_1049886	All Organisms → cellular organisms → Bacteria	644
SI48aug10_100mDRAFT_1050099	Not Available	642
SI48aug10_100mDRAFT_1050892	All Organisms → cellular organisms → Bacteria	634
SI48aug10_100mDRAFT_1052171	Not Available	623
SI48aug10_100mDRAFT_1052459	Not Available	620
SI48aug10_100mDRAFT_1055115	Not Available	598
SI48aug10_100mDRAFT_1066851	Not Available	520
SI48aug10_100mDRAFT_1067104	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580	519
SI48aug10_100mDRAFT_1067957	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales	514

Sequences

Scaffold ID	Protein ID	Family	Sequence
SI48aug10_100mDRAFT_1002299	SI48aug10_100mDRAFT_10022991	F077377	FEDGQQDEALTNQRDGRVYKKLKWTALHTSKCIQEAVFLLKEEEPSLSKEQLKKMLQAESVSIWFPYGVRKVEKALSVNGSAFHQRGWDRLGRGEPRFSGDSSTWPANHMAAVSLNSNCFKKE*
SI48aug10_100mDRAFT_1005031	SI48aug10_100mDRAFT_10050311	F066454	RLGINIRSVSNSIRFLIKEGWVEYSRESISVVGGDSFRITQVGIDKIKASTVDEYRQSPKRKIPDYEVMRSHLGVGDDVTRSELINLWNELTDYYLPYEGDKEFTGSNDFFSL*
SI48aug10_100mDRAFT_1005268	SI48aug10_100mDRAFT_10052686	F050420	MAYLHTPRLIFFLLLPIYGQAEEDLKYSYEHDSIGDKYDAEGDITFRNHKDNGVVFEYAHVNINWKGGFFKSSITDDFIQKKPIQNGLVLYDIVEGNQI
SI48aug10_100mDRAFT_1008587	SI48aug10_100mDRAFT_10085876	F012817	MNLYFIALLSLTGFYAFNYFQILNMDGWEMFDKYATENEKELKENLADQMLEANGNSDQEEVERLGMEYKNIYIEVRNEAKNEFWKHKKNNWRMVSFLIVFLFVINYLLSGRITLFHKSNN*
SI48aug10_100mDRAFT_1010092	SI48aug10_100mDRAFT_10100924	F073088	TYYLKPEFQSTQKNVIENELNIFIDFKEIGTIVGVKIIKYRKIEEIHKI*
SI48aug10_100mDRAFT_1011850	SI48aug10_100mDRAFT_10118501	F005848	MTDNQTGLTSFLTLTPNVLQDITNLIDPAATQILQYTLVKNGNATSVRAFSPSISATTAGRVPIGPVSMSSGSYQWQAVQSAGVLFNGQILVRYGSPLN*
SI48aug10_100mDRAFT_1012296	SI48aug10_100mDRAFT_10122963	F016736	VLTLNPKGVYLIDQLGPTYKQLQTGVREKEKVETKG
SI48aug10_100mDRAFT_1013370	SI48aug10_100mDRAFT_10133701	F009681	RLYIDAHLCRPQCGDLGQVNSETGKGIVYLAAFRGPWIAAIFLQSKGYEIITDETCNQCGDRVKIIRNLSKLEKRRCRDCDDYFFIETVSWSTRSFTIIDNELERDRYYYQCPSHYGKQDKTTMFL*
SI48aug10_100mDRAFT_1015776	SI48aug10_100mDRAFT_10157762	F034189	MTTNLAKWASNDGQITKSGLPNDRRAKFLPSVVGFAYDLLRYEYYLGNIGLR
SI48aug10_100mDRAFT_1018517	SI48aug10_100mDRAFT_10185172	F102550	MVETMAAHLSLRQQKIMLANRPSPGQPITTNNKKLGSV*
SI48aug10_100mDRAFT_1019073	SI48aug10_100mDRAFT_10190732	F066454	MSIRLDVLILINSGVTDRSEIVERLGINIMSVSNCFRFLIKEGWVEYSREPVSAVGSVGYRITQVGIDKIKALTVDDYRKSPQRKIPAYEVMRSHLGVGGDVTRSELVNLWNELTDYYLPYEGDKEFTEIVVFPP*
SI48aug10_100mDRAFT_1026176	SI48aug10_100mDRAFT_10261763	F029559	WNIAAGIAHTRIFFDGSDAEQTIAYLVAGNGYINYAGGGNHIGAISMGAAAGNSSNVLGDVSVTTVGVAAADTYMIGIEIGKMEGFELPNFMKNGQLGYNHNAAGFGDSY*
SI48aug10_100mDRAFT_1028677	SI48aug10_100mDRAFT_10286772	F096496	VNKKLVPRNIERNAILTKQQKIHLKSEKVDPKILNNIRRTLEKKLDGLTEDLDIIKNSKSLENWRLLQSEKFQELHKVLESTVMNFKPFYPFAVKTFSKKVGTKKFRMFWMDISEESNFSTERIFEPSFALRKIKHYFNDDSFELLCWAVENNLIPCYKNNAKREEDFELAKNDELYFLKLQNTRTFTNEKKVQLKPEIEKERLENNMMWDYINKQYDMLNKKLYKKYGVTAIPKIE
SI48aug10_100mDRAFT_1028909	SI48aug10_100mDRAFT_10289091	F098669	KWRLKEAEGLGRKWRIEETERRELHESDQGLDPGHGLNPGRKVRRIDQAMEGSPEIVPAKIRKKPCLGRVFFVLNFIPENLNYSNXYXDSCISTDQ*
SI48aug10_100mDRAFT_1029015	SI48aug10_100mDRAFT_10290152	F013575	HIVLALIIIVKDYNGTLEESLNNFEKKIGLYTEPDTTDTEDVPFYLPPIEEEVDSTFILPDRLKIKNNG*
SI48aug10_100mDRAFT_1030102	SI48aug10_100mDRAFT_10301021	F014445	KNLAEEKPEEASNSLKDNSFLILNCYNKLCLSLMH*
SI48aug10_100mDRAFT_1033347	SI48aug10_100mDRAFT_10333471	F088272	GTGLRASFNSDNKQTKGGIFMAVILLATSYLWINSTGYWFVAHAIEISGKNLLIISFFIGFLSTTKSISELNTNS*
SI48aug10_100mDRAFT_1033347	SI48aug10_100mDRAFT_10333472	F005012	MNLEVIKTILISLLLFPSIVFANDFELLCKGEEAKYLEEDPNSKEVTTKVIGIQLYEEGMRLDGEWFDNKSDLTEDYSLERSYVKSKDNITGVRNFSTNAXXEGRVIHTSKIDKVEINILTNDIFWTHEFNRVDKTNNEAKTIYAFRKNFQGKCK*
SI48aug10_100mDRAFT_1034337	SI48aug10_100mDRAFT_10343372	F100510	MSKQEHGTFELTEDVFARWDKENAKWYNKYFAIPFQRIIQAIKDFPSEVKWFYQRGSRGWSDRSAWSIDTWLVDNLIPMLERLKIDNHSDRSAWSIDTWLVDNLIPMLERLKIDNHSTPMSMFKKKDGFDKDGIPTDEANVLAAQRWDNVLNEIIYGLKCAKKLQDMDYNYKDKKLTKRLTKSSQRSFELIGKHLFSLWD*
SI48aug10_100mDRAFT_1038595	SI48aug10_100mDRAFT_10385951	F023872	SSQLDSIPRIKGFLLIQIVFINCTISIQVRNIFL*
SI48aug10_100mDRAFT_1042600	SI48aug10_100mDRAFT_10426001	F009761	IKGKKYFLSGILNLQNGIRKIKSINILKDPASIGGRDVFKASLFTGYELPKINIMNKTKR
SI48aug10_100mDRAFT_1043252	SI48aug10_100mDRAFT_10432521	F017636	MSRLEKKAQEEDNQKFASKKQGIFIFLPCWIPIILAFFHMAVGSDPGPYIIMGSVLALVCGSLGQLRAKIIQQNQTIQILQEKLEEVNGTTA*
SI48aug10_100mDRAFT_1043252	SI48aug10_100mDRAFT_10432522	F085651	VIKFYIFNTDHEQEPSRLGSSLFSKKLEASYLGEQFFVINNWFSGLKIYHNGNLVGQSNQLVVRNKYEPFTSVTVVGKKDKLLVEIYGYSSLFSFKFHIKINGDFVAGDKF*
SI48aug10_100mDRAFT_1044032	SI48aug10_100mDRAFT_10440322	F033071	VCDNFLINLAVHTSLLKNLQFKKAKILNFKIYTPLATLKYNFVEVSAGF
SI48aug10_100mDRAFT_1044137	SI48aug10_100mDRAFT_10441372	F039105	MSNKVSYDFAVDNVIAVDAPIGTDPDTLIEQVKVKLIERIQEGDITFMFENVFDGETGDYSEDWENYKR*
SI48aug10_100mDRAFT_1045455	SI48aug10_100mDRAFT_10454551	F046632	DGDGVRNIAKLQGKKKQISAFFSMFSRYMEVGVATQGGVHSVLEMDADVLLSAKGDVMSHLDQNGRRWTSISDLKETSRWTKFTAVEKDLEKMFDALVKKYLKRGEFQENATVWELWRMAERKVDKKTMSMIIKDYMDGMEKVIKKNIDTFENAMLSYAKKRSTDLSWDXQXVNNXKVKTAXFFKXPLKIAQTDDQIEMSEKQQELMEFAKSKKWSIKMWDVAIDLEAYTR
SI48aug10_100mDRAFT_1046983	SI48aug10_100mDRAFT_10469832	F016814	MGVVILLFGISSWGQFQLEIPEFLPQQSNIICEQMDSSNFDPNCRHEDYSIFRSWCLGNRCDDHGVKGYAKSINEDGEITWYSTQEQITLDIASLEDWQIIQYTQQELQE
SI48aug10_100mDRAFT_1047562	SI48aug10_100mDRAFT_10475622	F093660	YVYIEFAFGWSPVAELEFDFDADGWWHDSYFFNSHKEISEFWQSELGINAYYLEKDKRQREIDSLINAHICEVSEGMMSLSHVG*
SI48aug10_100mDRAFT_1047697	SI48aug10_100mDRAFT_10476971	F004071	MGGGFAEIPARLQPYEFCSDKAQEYITYVENIDYEEGNGQVWIHGTYNNKKIFATYCKTPDKKYWVSYYDPEYE
SI48aug10_100mDRAFT_1048807	SI48aug10_100mDRAFT_10488071	F069322	VKQMNFKAYRFRNNNDVVTKVPPEFLGFTHKSDKTTYFDTEGNVKEGYSRWYMIQEWFKGTGKGLLKGKVDGFADHGMGNYHSLCEKESKK*
SI48aug10_100mDRAFT_1049886	SI48aug10_100mDRAFT_10498861	F000926	LLQDAVDRADAAFVPKPKQQRKGRETLNVKGLFGVFKLQRDYYYHAGKKQGHYPADSALGLEIGYTPALARLMCLEGADEPSYLQAEEHLREIGGIEVSARQIQRVVQRVGKDAQLWQEREVIANQCNQ
SI48aug10_100mDRAFT_1050099	SI48aug10_100mDRAFT_10500993	F029239	RKKRLNNQNSDKSLAGLVIDWHLANTEMGFDNFVEPMISDYQPTYANA*
SI48aug10_100mDRAFT_1050892	SI48aug10_100mDRAFT_10508922	F073263	MANNYTKTMXQAXQEAREYRDTTEGGPGSGPQKGGKKFSSSEIKKAYGILNDPRYKQGNYTGAAKAINKLAPGLADHPDVKNAMKRANENLDLPATGDTTTSNASQEVEQVEDLKEYTGMSISKSVNSNDVATALKNLKKGTKLYVQGKSQGGMRTMGDVIS
SI48aug10_100mDRAFT_1052171	SI48aug10_100mDRAFT_10521711	F024324	HGSIVHGHRFGWIKKAGNCDTDILATTISTQKNNKDRLNDFKGKNINLRINFPQADGEDPAIINTDLISIFGFANLKIAFLGNFIQGQMFDSLMAYFNTIRIEVTNPHKIYFDIPSDEYSLNGYVAAKLKAKELCEDIVKTTSL*
SI48aug10_100mDRAFT_1052459	SI48aug10_100mDRAFT_10524592	F061978	SINLIKKILTLMNKFFILIILNILFFSKVIAATANCANGECEFINSYHYKYAKTYCSQNLSFXEVETELSYFTILKTXQKCEVFEITE*
SI48aug10_100mDRAFT_1055115	SI48aug10_100mDRAFT_10551152	F057661	ILLSICDIDYYSQKKTRSIISERQYVNFFIIIYT*
SI48aug10_100mDRAFT_1066851	SI48aug10_100mDRAFT_10668512	F044364	MNISTIKNLSSKIXXEFSRMKSSKSLEDKLMNLGVMISLLSKQNEELADQMNKSLK*NSPETLVRRTIH
SI48aug10_100mDRAFT_1067104	SI48aug10_100mDRAFT_10671041	F011521	IKWKGGFFKSTITDDFIQKKEIKNGLVLYDIVEGDQKKGYSVFARHIDVKNYPVGFETKKIINDEGRHPAFSDYDWIFKFKTESVESIKISGQMRKSLHTKLWGSRPTSTTNCQMTQPGMNFSTSTGEIYVETWFDLKDSKLLKQVFTKYGCVPSRRLVSKETWVLIN*
SI48aug10_100mDRAFT_1067957	SI48aug10_100mDRAFT_10679572	F014325	FFIWIFGYVFNGVFFPAIFFPIFHIQLLIVLTEFELYSTVTDLAKFLGLSIS*