NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F088272

Metagenome / Metatranscriptome Family F088272

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F088272
Family Type Metagenome / Metatranscriptome
Number of Sequences 109
Average Sequence Length 75 residues
Representative Sequence LRASFNSDNKQKKGGIFMAVILLATSYLWINSTGYWFVAHAIEISGKNLLIISFFIGFLSTTKSISELNTNS
Number of Associated Samples 89
Number of Associated Scaffolds 109

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 66.06 %
% of genes from short scaffolds (< 2000 bps) 66.97 %
Associated GOLD sequencing projects 80
AlphaFold2 3D model prediction Yes
3D model pTM-score0.35

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (88.073 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine
(25.688 % of family members)
Environment Ontology (ENVO) Unclassified
(79.817 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(88.073 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 63.00%    β-sheet: 0.00%    Coil/Unstructured: 37.00%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.35
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 109 Family Scaffolds
PF02696SelO 6.42
PF04892VanZ 3.67
PF12706Lactamase_B_2 1.83
PF01370Epimerase 0.92
PF00753Lactamase_B 0.92

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 109 Family Scaffolds
COG0397Protein adenylyltransferase (AMPylase) SelO/YdiU (selenoprotein O)Posttranslational modification, protein turnover, chaperones [O] 6.42


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A88.07 %
All OrganismsrootAll Organisms11.93 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000226|SI34jun09_135mDRAFT_1063720Not Available701Open in IMG/M
3300000239|SI36aug09_120mDRAFT_1090235Not Available506Open in IMG/M
3300000324|SI48aug10_100mDRAFT_1033347Not Available894Open in IMG/M
3300001352|JGI20157J14317_10036879All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Desulfuromonadaceae → Desulfuromonas → unclassified Desulfuromonas → Desulfuromonas sp.2449Open in IMG/M
3300001352|JGI20157J14317_10057603Not Available1721Open in IMG/M
3300001354|JGI20155J14468_10189408Not Available626Open in IMG/M
3300001952|GOS2224_1026965Not Available1385Open in IMG/M
3300003478|JGI26238J51125_1074336Not Available661Open in IMG/M
3300004097|Ga0055584_100093053Not Available2997Open in IMG/M
3300004109|Ga0008650_1162711Not Available583Open in IMG/M
3300004110|Ga0008648_10089012Not Available864Open in IMG/M
3300007862|Ga0105737_1091317All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter765Open in IMG/M
3300008253|Ga0105349_10344330Not Available620Open in IMG/M
3300008964|Ga0102889_1094500Not Available889Open in IMG/M
3300009003|Ga0102813_1260172Not Available536Open in IMG/M
3300009071|Ga0115566_10403319Not Available788Open in IMG/M
3300009172|Ga0114995_10514922Not Available654Open in IMG/M
3300009420|Ga0114994_10901351Not Available573Open in IMG/M
3300009438|Ga0115559_1253723Not Available623Open in IMG/M
3300009442|Ga0115563_1174478All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter844Open in IMG/M
3300009443|Ga0115557_1104824Not Available1187Open in IMG/M
3300009447|Ga0115560_1174573Not Available843Open in IMG/M
3300009447|Ga0115560_1215279Not Available743Open in IMG/M
3300009472|Ga0115554_1171248Not Available890Open in IMG/M
3300009512|Ga0115003_10088364Not Available1917Open in IMG/M
3300009526|Ga0115004_10321465Not Available917Open in IMG/M
3300009785|Ga0115001_10348799Not Available932Open in IMG/M
3300009786|Ga0114999_11196171Not Available542Open in IMG/M
3300011248|Ga0151670_1044613Not Available581Open in IMG/M
3300012969|Ga0129332_1499957Not Available504Open in IMG/M
3300017697|Ga0180120_10125859Not Available1099Open in IMG/M
3300020185|Ga0206131_10290824Not Available736Open in IMG/M
3300020187|Ga0206130_10345307Not Available620Open in IMG/M
3300021085|Ga0206677_10352529Not Available571Open in IMG/M
3300021957|Ga0222717_10476255All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter676Open in IMG/M
(restricted) 3300022912|Ga0233430_1279886Not Available617Open in IMG/M
(restricted) 3300022931|Ga0233433_10417074Not Available524Open in IMG/M
(restricted) 3300022933|Ga0233427_10170235Not Available981Open in IMG/M
3300024231|Ga0233399_1110199Not Available624Open in IMG/M
(restricted) 3300024255|Ga0233438_10331252Not Available574Open in IMG/M
(restricted) 3300024258|Ga0233440_1116207Not Available830Open in IMG/M
(restricted) 3300024261|Ga0233439_10373075Not Available592Open in IMG/M
3300024267|Ga0228623_1092994All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter547Open in IMG/M
3300024296|Ga0228629_1173660All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter556Open in IMG/M
3300024297|Ga0228658_1098317Not Available723Open in IMG/M
3300024319|Ga0228670_1084252Not Available658Open in IMG/M
3300024328|Ga0228635_1100228Not Available664Open in IMG/M
3300025592|Ga0209658_1032898All Organisms → cellular organisms → Bacteria1529Open in IMG/M
3300025663|Ga0209775_1182714Not Available576Open in IMG/M
3300025672|Ga0209663_1139775Not Available704Open in IMG/M
3300025704|Ga0209602_1046419Not Available1831Open in IMG/M
3300025722|Ga0209660_1230719Not Available576Open in IMG/M
3300025822|Ga0209714_1093890Not Available847Open in IMG/M
3300025860|Ga0209119_1221004Not Available720Open in IMG/M
3300025874|Ga0209533_1373591Not Available522Open in IMG/M
3300025880|Ga0209534_10441275Not Available551Open in IMG/M
3300025890|Ga0209631_10413448Not Available622Open in IMG/M
3300025892|Ga0209630_10234455Not Available871Open in IMG/M
3300025894|Ga0209335_10364240Not Available595Open in IMG/M
3300025897|Ga0209425_10208944Not Available1036Open in IMG/M
3300025897|Ga0209425_10431075Not Available625Open in IMG/M
3300027752|Ga0209192_10281760Not Available604Open in IMG/M
3300027780|Ga0209502_10223255All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter853Open in IMG/M
3300027791|Ga0209830_10197793Not Available938Open in IMG/M
3300027801|Ga0209091_10246838All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter869Open in IMG/M
3300028134|Ga0256411_1111736Not Available924Open in IMG/M
3300028135|Ga0228606_1073221Not Available896Open in IMG/M
3300028280|Ga0228646_1138718All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter588Open in IMG/M
3300028297|Ga0228617_1142885All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter541Open in IMG/M
3300028397|Ga0228639_1130251Not Available602Open in IMG/M
3300031638|Ga0302125_10053816Not Available1370Open in IMG/M
3300031766|Ga0315322_10728018All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter621Open in IMG/M
3300031774|Ga0315331_10733619Not Available695Open in IMG/M
3300031775|Ga0315326_10675568All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter652Open in IMG/M
3300032088|Ga0315321_10633907Not Available629Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Pelagic MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine25.69%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine15.60%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine11.93%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine11.01%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater11.01%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater7.34%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater5.50%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine2.75%
SeawaterEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Seawater2.75%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine0.92%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous0.92%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient0.92%
Estuary WaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water0.92%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine0.92%
Methane Seep MesocosmEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Methane Seep Mesocosm0.92%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water0.92%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000167Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 39 11/10/09 120mEnvironmentalOpen in IMG/M
3300000226Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 34 06/16/09 135mEnvironmentalOpen in IMG/M
3300000239Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 36 08/11/09 120mEnvironmentalOpen in IMG/M
3300000324Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 48 08/11/10 100mEnvironmentalOpen in IMG/M
3300001348Pelagic Microbial community sample from North Sea - COGITO 998_met_04EnvironmentalOpen in IMG/M
3300001349Pelagic Microbial community sample from North Sea - COGITO 998_met_10EnvironmentalOpen in IMG/M
3300001352Pelagic Microbial community sample from North Sea - COGITO 998_met_07EnvironmentalOpen in IMG/M
3300001354Pelagic Microbial community sample from North Sea - COGITO 998_met_05EnvironmentalOpen in IMG/M
3300001355Pelagic Microbial community sample from North Sea - COGITO 998_met_08EnvironmentalOpen in IMG/M
3300001952Marine microbial communities from Newport Harbor, Rhode Island, USA - GS008EnvironmentalOpen in IMG/M
3300003478Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_100m_DNAEnvironmentalOpen in IMG/M
3300003619Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI072_LV_165m_DNAEnvironmentalOpen in IMG/M
3300004097Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - OSD3 (Helgoland) metaGEnvironmentalOpen in IMG/M
3300004109Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S2LV_150m_DNAEnvironmentalOpen in IMG/M
3300004110Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S2LV_100m_DNAEnvironmentalOpen in IMG/M
3300007862Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1373A_0.2umEnvironmentalOpen in IMG/M
3300008253Methane-oxidizing microbial communities from mesocosms in the Hudson Canyon - EN1B Hudson CanyonEnvironmentalOpen in IMG/M
3300008950Estuarine microbial communities from the Columbia River estuary - metaG 1552A-02EnvironmentalOpen in IMG/M
3300008964Estuarine microbial communities from the Columbia River estuary - metaG 1551A-02EnvironmentalOpen in IMG/M
3300009003Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.725EnvironmentalOpen in IMG/M
3300009071Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405EnvironmentalOpen in IMG/M
3300009172Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154EnvironmentalOpen in IMG/M
3300009420Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152EnvironmentalOpen in IMG/M
3300009434Pelagic marine microbial communities from North Sea - COGITO_mtgs_110516EnvironmentalOpen in IMG/M
3300009436Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M MetagenomeEnvironmentalOpen in IMG/M
3300009438Pelagic marine microbial communities from North Sea - COGITO_mtgs_110506EnvironmentalOpen in IMG/M
3300009442Pelagic marine microbial communities from North Sea - COGITO_mtgs_110519EnvironmentalOpen in IMG/M
3300009443Pelagic marine microbial communities from North Sea - COGITO_mtgs_110421EnvironmentalOpen in IMG/M
3300009445Pelagic marine microbial communities from North Sea - COGITO_mtgs_110331EnvironmentalOpen in IMG/M
3300009447Pelagic marine microbial communities from North Sea - COGITO_mtgs_110509EnvironmentalOpen in IMG/M
3300009472Pelagic marine microbial communities from North Sea - COGITO_mtgs_110404EnvironmentalOpen in IMG/M
3300009496Pelagic marine microbial communities from North Sea - COGITO_mtgs_120524EnvironmentalOpen in IMG/M
3300009507Pelagic marine microbial communities from North Sea - COGITO_mtgs_120607EnvironmentalOpen in IMG/M
3300009512Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_88EnvironmentalOpen in IMG/M
3300009526Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_90EnvironmentalOpen in IMG/M
3300009785Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_130EnvironmentalOpen in IMG/M
3300009786Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_126EnvironmentalOpen in IMG/M
3300011248Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_2, 0.2EnvironmentalOpen in IMG/M
3300012969Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.2_RNA2 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300017697Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.2_DNA (version 2)EnvironmentalOpen in IMG/M
3300020185Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1EnvironmentalOpen in IMG/M
3300020187Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160512_1EnvironmentalOpen in IMG/M
3300020431Marine microbial communities from Tara Oceans - TARA_B100001142 (ERX556101-ERR598983)EnvironmentalOpen in IMG/M
3300021085Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015EnvironmentalOpen in IMG/M
3300021185Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015EnvironmentalOpen in IMG/M
3300021957Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18DEnvironmentalOpen in IMG/M
3300022912 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_118_April2016_150_MGEnvironmentalOpen in IMG/M
3300022931 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_100_MGEnvironmentalOpen in IMG/M
3300022933 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_118_April2016_100_MGEnvironmentalOpen in IMG/M
3300024231Seawater microbial communities from Monterey Bay, California, United States - 43DEnvironmentalOpen in IMG/M
3300024255 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_10_MGEnvironmentalOpen in IMG/M
3300024258 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_120_MGEnvironmentalOpen in IMG/M
3300024261 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_100_MGEnvironmentalOpen in IMG/M
3300024267Seawater microbial communities from Monterey Bay, California, United States - 28DEnvironmentalOpen in IMG/M
3300024296Seawater microbial communities from Monterey Bay, California, United States - 36DEnvironmentalOpen in IMG/M
3300024297Seawater microbial communities from Monterey Bay, California, United States - 71DEnvironmentalOpen in IMG/M
3300024319Seawater microbial communities from Monterey Bay, California, United States - 85DEnvironmentalOpen in IMG/M
3300024328Seawater microbial communities from Monterey Bay, California, United States - 44DEnvironmentalOpen in IMG/M
3300024359Seawater microbial communities from Monterey Bay, California, United States - 34DEnvironmentalOpen in IMG/M
3300025592Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S4LV_150m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025663Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI072_LV_135m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025672Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI073_LV_135m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025680Pelagic marine microbial communities from North Sea - COGITO_mtgs_110328 (SPAdes)EnvironmentalOpen in IMG/M
3300025704Pelagic marine microbial communities from North Sea - COGITO_mtgs_120524 (SPAdes)EnvironmentalOpen in IMG/M
3300025722Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI072_LV_100m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025822Pelagic marine microbial communities from North Sea - COGITO_mtgs_110414 (SPAdes)EnvironmentalOpen in IMG/M
3300025860Pelagic Microbial community sample from North Sea - COGITO 998_met_03 (SPAdes)EnvironmentalOpen in IMG/M
3300025874Pelagic Microbial community sample from North Sea - COGITO 998_met_04 (SPAdes)EnvironmentalOpen in IMG/M
3300025876Pelagic Microbial community sample from North Sea - COGITO 998_met_06 (SPAdes)EnvironmentalOpen in IMG/M
3300025880Pelagic Microbial community sample from North Sea - COGITO 998_met_07 (SPAdes)EnvironmentalOpen in IMG/M
3300025886Pelagic Microbial community sample from North Sea - COGITO 998_met_10 (SPAdes)EnvironmentalOpen in IMG/M
3300025890Pelagic Microbial community sample from North Sea - COGITO 998_met_08 (SPAdes)EnvironmentalOpen in IMG/M
3300025892Pelagic Microbial community sample from North Sea - COGITO 998_met_01 (SPAdes)EnvironmentalOpen in IMG/M
3300025894Pelagic Microbial community sample from North Sea - COGITO 998_met_09 (SPAdes)EnvironmentalOpen in IMG/M
3300025897Pelagic Microbial community sample from North Sea - COGITO 998_met_05 (SPAdes)EnvironmentalOpen in IMG/M
3300027752Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154 (SPAdes)EnvironmentalOpen in IMG/M
3300027780Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_90 (SPAdes)EnvironmentalOpen in IMG/M
3300027791Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_130 (SPAdes)EnvironmentalOpen in IMG/M
3300027801Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_128 (SPAdes)EnvironmentalOpen in IMG/M
3300028134Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - WCR_12 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300028135Seawater microbial communities from Monterey Bay, California, United States - 7DEnvironmentalOpen in IMG/M
3300028280Seawater microbial communities from Monterey Bay, California, United States - 58DEnvironmentalOpen in IMG/M
3300028297Seawater microbial communities from Monterey Bay, California, United States - 18DEnvironmentalOpen in IMG/M
3300028397Seawater microbial communities from Monterey Bay, California, United States - 50DEnvironmentalOpen in IMG/M
3300031638Marine microbial communities from Western Arctic Ocean, Canada - CB4_surfaceEnvironmentalOpen in IMG/M
3300031766Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 21515EnvironmentalOpen in IMG/M
3300031774Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 34915EnvironmentalOpen in IMG/M
3300031775Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 80m 32315EnvironmentalOpen in IMG/M
3300032088Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 80m 21515EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
SI39nov09_120mDRAFT_101803613300000167MarineLRASFNSENNNQKKGSIFMAVIILVISYLWINSTGYWFVAHVIEISGKNLLIISFFIGFLGTTKSITEINAKS*
SI34jun09_135mDRAFT_106372013300000226MarineTKGGIFMAVILLATSYLWINSTGYWFVAHAIEISGKNLLIISFFIGFLSTTKSISELNTNS*
SI36aug09_120mDRAFT_109023513300000239MarineFNSENNNQKKGSIFMAVIILVISYLWINSTGYWFVAHVIEISGKNLLIISFFIGFLGTTKSITEINAKS*
SI48aug10_100mDRAFT_103334713300000324MarineGTGLRASFNSDNKQTKGGIFMAVILLATSYLWINSTGYWFVAHAIEISGKNLLIISFFIGFLSTTKSISELNTNS*
JGI20154J14316_1005404713300001348Pelagic MarineQKKGSIFMAVIVLAISYLWINSTSYWYVAHAIEISGKNLLIISFFIGFFCTTKKITNLINETK*
JGI20154J14316_1010090323300001348Pelagic MarineFNGDNKSQRQGSIFMTIIILALSYLWIYASGYWYIANGIEISGKNLLIISFFIGFLSTTKTISEINYKT*
JGI20154J14316_1015883023300001348Pelagic MarineMSGIVAPILAWFAGTGLRASFNSENNNQKKGSIFMTIIVLAISYLWINSTNYWFVAHAIEISGKNLLIISFFIGFLGTTKAISDLNSKP*
JGI20160J14292_1022171513300001349Pelagic MarineRASFNGDNKSQKQGSIFMTIIILALSYSWINASGYWYIANGIEISGKNLLVISFFIGFFCTSKKITDLINERK*
JGI20157J14317_1003687913300001352Pelagic MarineSFNSENNNQKKGSIFMATILLAISYLWINSTGYWFVANSIEISGKNLLIISFLIGFFCTTKKITNLINETK*
JGI20157J14317_1005760343300001352Pelagic MarineGIFMAVILLATSYLWINSTGYWFVAHAIEISGKNLLIISFFIGFLSTTKSISEPNTNS*
JGI20155J14468_1015069223300001354Pelagic MarineGLRASFNGNNKSQRQGSIFMAIIILALSYLWINASGYWYIANGIEISGKNLLVISFFIGFLSTTKTISEKNS*
JGI20155J14468_1018940823300001354Pelagic MarineIFMAIIILAISYLWINSTGYWYNAHAIEISGKNLLIISFFIGFLGTTKSISDINSKS*
JGI20158J14315_1014710813300001355Pelagic MarineLAWFAGTGLRASFNNENNIQKKGSIFMAVIVLAISYLWINSTSYWYVAHAIEISGKNLLIISFFIGFFCTTKKITNLINETK*
GOS2224_102696533300001952MarineASIVAWFAGTGLRASFNSENNNQQKSSIFMALILLAISYLWINSTGYWYVAHGIEISGKNLLIISFFIGFLGTTKSISDINS*
JGI26238J51125_107433613300003478MarineFNSDNKQTKGGIFMAVILLATSYXWINSTGYWFVAHAIEISGKNLLIISFFIGFLSTTKSISELNTNS*
JGI26380J51729_1007766323300003619MarineENNNQKKGSIFMAVIILVISYLWINSTGYWFVAHVIEISGKNLLIISFFIGFLGTTKSITEINAKS*
Ga0055584_10009305343300004097Pelagic MarineQRQGSIFMTIIILALSYLWIYASGYWYIANGIEISGKNLLIISFFIGFLSTTKTISEINYKT*
Ga0008650_116271113300004109MarineSFNSENNNQKKGSIFMAVIILVISYLWINSTGYWFVAHVIEISGKNLLIISFFIGFLGTTKSITEINAKS*
Ga0008648_1008901213300004110MarineIFMAVILLATSYLWINSTGYWFVAHAIEISGKNLLIISFFIGFLSTTKSISELNTNS*
Ga0105737_109131713300007862Estuary WaterTSVNTSISGIVAPILAWFAGTGLRASFNSDNKQTKGGIFMAVILLATSYLWINSTGYWFVAHAIEISGKNLLIISFFIGFLSTTKSISEPNTNS*
Ga0105349_1034433013300008253Methane Seep MesocosmPILAWFAGTGLRASFNTDNNQKKGSIFMAVIILVISYLWINSTGYWFVAHAIEISGKNLLIISFFIGFLSTTKSISEPNTNS*
Ga0102891_112302113300008950EstuarineNQKKGSIFMAVIILVISYLWINSTGYWYVAHAIEISGKNLLIISFFIGFLSTTKSISELNTNS*
Ga0102889_109450013300008964EstuarineNEDSIQKKGSIFMAVIFLALSYIWVNSTGYWYVAHAIEISGKNLLIISFFIGFLSTTKSISELNTNS*
Ga0102813_126017223300009003EstuarineQTKGGIFMAVILLGTSYLWINSTGYWFDAHAIEISGKNLLIISFFIGFLGTTKSISDINSKS*
Ga0115566_1040331913300009071Pelagic MarineMSGIVAPMLAWFAGTGLRASFNSESNNQKKGSIFMAVILLAISYLWINSTGYWYVAQAIEISGKNLLIISFFIGFLGTTKAISDLNSKS*
Ga0115566_1082032723300009071Pelagic MarineSINTSLSGIFAPILAWFSGTGLRASFNGDNKTQKQGSIFMTIIILALSYLWINASGYWYIANEIEISGKNLLVISFFIGFLSTTKTISQIKKN*
Ga0114995_1051492213300009172MarineNNNQKKGSIFMAVILLIVSYVWINSTGYWYVANENEITGKNLSVISFFVGFLSTAKAISEINKN*
Ga0114994_1090135123300009420MarineSGIVSPILAWFAGTGLRASFNSENNNQKKGSIFMAFILLAVSYLWISSTGYWYVANVIEISGKNLLVISFFIGFLSTAKTISEINKN*
Ga0115562_113646823300009434Pelagic MarineMSGIIAPILAWFAGTGLRASFNNENNIQKKGSIFMAVIVLAISYLWINSTSYWYVAHAIEISGKNLLIISFFIGFFCTTKKITNLINETK*
Ga0115008_1011506043300009436MarineGIVAPILAWFAGTGLRASFNGDNNQTKGSIFMAVILLASGYLWINSTGYWYVAHAIEISGKNLLIISFFIGFLSTTKSISELKTKS*
Ga0115559_125372323300009438Pelagic MarineNGDNKSQRQGSIFMTIIILALSYLWIYASGYWYIANGIEISGKNLLIISFFIGFLSTTKTISEINYKT*
Ga0115563_117447823300009442Pelagic MarineDTSVNTSISGIVAPILAWFAGTGLRASFNSDNKQTKGGIFMAVILLATSYLWINSTGYWFVAHAIEISGKNLLIISFFIGFLSTTKSISELNTNS*
Ga0115563_124691813300009442Pelagic MarineSGIIAPILAWFAGTGLRASFNNENNIQKKGSIFMAVIVLAISYLWINSTSYWYVAHAIEISGKNLLIISFFIGFFCTTKKITNLINETK*
Ga0115563_136733623300009442Pelagic MarineSFNGDNKSQKQGSIFMTIIILALSYSWINASGYWYIANGIEISGKNLLIISFFIGFFCTSKKITDLINERK*
Ga0115557_110482443300009443Pelagic MarineFMAVILLATSYLWINSTGYWFVAHAIEISGKNLLIISFFIGFLSTTKSISELNTNS*
Ga0115553_140867913300009445Pelagic MarineGSIFMATILLAISYLWINSTGYWFVANSIEISGKNLLIISFLIGFFCTTKKITNLINETK
Ga0115560_117457333300009447Pelagic MarineGIFAPILAWFSGTGLRASFNGDNKSQRQGSIFMTIIILALSYLWINASGYWYIANGIEISGKNLLVISFFIGFLSTTKTISQIKKY*
Ga0115560_121527923300009447Pelagic MarineMSGIVAPIFAWFAGTGLRASFNSKDNNQKKGSIFMAIIVLAISYLWINSTNYWYVAHAIEISGKNLLIISFFIGFLGTTKSISDLNSKS*
Ga0115554_117124833300009472Pelagic MarineGTGLRASFNSENNNQKKGSIFMAIIILAISYLWINSTGYWYNAQAIEISGKNLLIISFFIGFLGTTKSISDLNSKS*
Ga0115570_1007181843300009496Pelagic MarineASFNGDNKSQKQGSIFMTIIILALSYSWINASGYWYIANGIEISGKNLLVISFFIGFFCTSKKITDLINERK*
Ga0115572_1025837123300009507Pelagic MarineMSGIIAPILAWFAGTGLRASFNSENNNQKKGSIFMAVILLAISYLWINSTGYWFVANEIEISGKNLLVISFLIGFFCTTKKITNLINETK*
Ga0115003_1008836413300009512MarineNHKKGSIFMTVILLAISYLWINTTSYWYVANVIEISGKNLLVISFFIGFLSTVKAISDINKN*
Ga0115004_1032146513300009526MarineFAGTGLRASFNSENNNQKKGSIFMAVILLAVSYLWINSTGYWYVANEIEISGKNLLVISFFIGFLSTVKAISQINKN*
Ga0115001_1034879933300009785MarineQKKGSIFMAVILLAISYLWINTTSYWYVADVIEISGKNLLVISFFIGFLSTVKAISEINKN*
Ga0114999_1119617113300009786MarineKKGSIFMAVILLAVSYLWINSTGYWYVANEIEISGKNLLVISFFIGFLSTAKTISEINKN
Ga0151670_104461333300011248MarineTGLRASFNSENNNQKKGSIFMAVIILVISYLCINSTGYWYIAHAIEISGKNLLIISFFIGFLGTTKSISDINSKS*
Ga0129332_149995713300012969AqueousSTSGIVAPILAWFAGTGLRASFNGDNNQTKGSIFMAVILLATSYLWINSTGYWYVAHAIEISGKNLLIISFFIGFLSTTKSISELKTKS*
Ga0180120_1012585913300017697Freshwater To Marine Saline GradientIQKKGSIFMAVIVLAISYLWINSTGYWYVAHAIEISGKNLLIISFFIGFLGTTKSISDINSNS
Ga0206131_1018867313300020185SeawaterSMSGIVAPILAWFAGTGLRASFNSENNNQKKGSIFMAVIILVISYFWINSTGYWYVAHAIEISGKNLLIISFFIGFLGTTKSISDLNPKS
Ga0206131_1029082423300020185SeawaterTSMSGIVAPIFAWFAGTGLRASFNSENNNQKKGSIFMAIIVLAISYLWINSTNYWYVAHAIEISGKNLLIISFFIGFLGTTKAISDLNSKS
Ga0206130_1034530713300020187SeawaterASFNSENNNQKRGSIFMAVIVLAISYIWINSTGYWYVAHEIEISGKNLLIISFFIGFLGTTKSISDLNSKS
Ga0211554_1043224913300020431MarineIFAPLLAWFSGTGLRASFNSDNKSQRQGSIFMTIILLALSYLWINASGYWYIANEIEISGKNLLVISFFIGFLSTTKTISQIKKY
Ga0206677_1035252923300021085SeawaterGLRASFNSDNKQTKGGIFMAVILLATSYLWINSTGYWFVAHAIEISGKNLLIISFFIGFLSTTKSIAELNTNS
Ga0206682_1020597113300021185SeawaterLRASFNSDNKQTKGGIFMAVILLATSYLWINSTGYWFVAHAIEISGKNLLIISFFIGFLSTTKSISELNTNS
Ga0222717_1047625523300021957Estuarine WaterNISINTSMSGIVAPILAWFAGTGLRASFNSENNNQKKGSIFMAVIVLAISYLWINSTGYWYFAHAIEIPGKNLLIISFFIGFLGTTKAISDLNSKS
(restricted) Ga0233430_127988613300022912SeawaterASFNSDNKQTKGGIFMAVILLATSYPWINSTDYWFVAHAIEISGKNLLIISFFIGFLSTTKSISELNTNS
(restricted) Ga0233433_1041707413300022931SeawaterGTGLRASFNNEDSIQKKGSIFMVIILLALSYIWVNSTGYWYVAHAIEISGKNLLIISFFIGFLSTTKTISEINFKS
(restricted) Ga0233427_1017023513300022933SeawaterNNEDSIQKKGSIFMVVILLALSYIWVNSTGYWYVAHAIEISGKNLLIISFFIGFLSTTKTISEINFKS
Ga0233399_111019923300024231SeawaterDNKQTKGGIFMAVILLATSYVWINSTGYWFVAHAIEISGKNLLIISFFIGFLSTTKSISELNSKS
(restricted) Ga0233438_1033125223300024255SeawaterLAWFAGTGLRASFNSDNKQTKGGIFMAVILLATSYVWINSTGYWFDAHAIEISGKNLLIISFFIGFLSTTKSISDINSKS
(restricted) Ga0233438_1037816413300024255SeawaterSLSGIFAPLLAWFSGTGLRASFNGDNKSQRQGSIFMTIIILGLSYLWINASGYWYIVNGIEISGKNLLVISFFIGFLSTTKTISQINKY
(restricted) Ga0233440_111620733300024258SeawaterNKQTKGCIFMAVILLATSYLWINSTGYWFVAHAIEISGKNLLIISFFIGFLSTTKSISELNTNS
(restricted) Ga0233439_1026988923300024261SeawaterFNSDNKSQRQGSIFMTIILLALSYLWINASGYWYIANEIEISGKNLLVISFFIGFLSTTKTISQIKKY
(restricted) Ga0233439_1037307513300024261SeawaterTGLRASFNNDNNQKKSSIFMAVILLVVSYVWINSTGYWYVAHAIEISGKNLLIISFFIGFLSTTKTISEINFKS
Ga0228623_109299423300024267SeawaterISINTSMSGIVAPILAWFAGTGLRASFNSENNNQKKGSIFMAVIILVISYLWINSTGYWYIAHAIEISGKKLLIISFFIGFLGTTKSISDINSKS
Ga0228629_117366023300024296SeawaterISGIVAPILAWFAGTGLRASFNSDNKQTKGGIFMAVILLATSYLWINSTGYWFVAHAIEISGKNLLIISFFIGFLSTTKSISDINSKS
Ga0228658_109831713300024297SeawaterWFAGTGLRASFNSDNKQTKGGIFMAVILLATSYLWINSTGYLFVAHAIEISGKNLLIISFFIGFLSTTKSISDINSKS
Ga0228670_108425223300024319SeawaterQTKGGIFMAVILLATSYVWINSTGYWFDAHAIEISGKNLLIISFFIGFLSTTKSISDINSKS
Ga0228635_110022813300024328SeawaterPILAWFAGTGLRASFNSENNNQKKGSIFMAVIILVISYLWINSTGYWYIAHAIEISGKNLLIISFFIGFLGTTKSISDINSKS
Ga0228628_104429213300024359SeawaterGTGLRASFNSDNKQTKGGIFMAVILLATSYVWINSTGYWFDAHAIEISGKNLLIISFFIGFLSTTKSISDINSKS
Ga0209658_103289843300025592MarineFMAVIILVISYLWINSTGYWFVAHVIEISGKNLLIISFFIGFLGTTKSITEINAKS
Ga0209775_118271413300025663MarineLRASFNSDNKQTKGGIFMAVILLATSYPWINSTDYWFVAHAIEISGKNLLIISFFIGFLSTTKSISELNTNS
Ga0209663_113977523300025672MarineSENNNQKKGSIFMAVIILVISYLWINSTGYWFVAHVIEISGKNLLIISFFIGFLGTTKSITEINAKS
Ga0209306_120909423300025680Pelagic MarineTNTSLSGIFAPILAWFSGTGLRASFNGDNKSQRQGSIFMTIILLALSYLWINASGYWYIANGIEISGKNLLVISFFIGFLSTTKTISQIKKY
Ga0209602_104641913300025704Pelagic MarineKSQRQGSIFMTIILLALSYLWINASGYWYIANEIEISGKNLLVISFFIGFLSTTKTISQIKKY
Ga0209660_123071913300025722MarineLRASFNSDNKQKKGGIFMAVILLATSYLWINSTGYWFVAHAIEISGKNLLIISFFIGFLSTTKSISELNTNS
Ga0209714_109389033300025822Pelagic MarineTNTSLSGIFAPLLAWFSGTGLRASFNSDNKSQRQGSIFMTIIILALSYLWINASGYWYIANGIEISGKNLLVISFFIGFLSTTKAISQIKKY
Ga0209119_122100413300025860Pelagic MarineLAWFAGTGLRASFNSDNKQTKGGIFMAVILLATSYLWINSTGYWFVAHAIEISGKNLLIISFFIGFLSTTKSISELNTNS
Ga0209533_103311013300025874Pelagic MarineFNGDNKSQRQGSIFMTIIILALSYLWIYASGYWYIANGIEISGKNLLIISFFIGFLSTTKTISEINYKT
Ga0209533_137359123300025874Pelagic MarineENNNQKKGSIFMAIIVLAISYLWINSAGYWYVAHAIEISGKNLLIISFFFGFLGTTKSISDLNPKS
Ga0209223_1007892543300025876Pelagic MarineASFNGDNKSQRQGSIFMTIIILALSYLWINASGYWYIANGIEISGKNLLVISFFIGFFCTSKKITDLINERK
Ga0209534_1000878913300025880Pelagic MarineSGTGLRASFNGDNKSQRQGSIFMTIIILALSYLWIYASGYWYIANGIEISGKNLLIISFFIGFLSTTKTISEINYKT
Ga0209534_1019250513300025880Pelagic MarineAGTGLRASFNSENNNQKKGSVFMAVILLATSYLWINSTGYWYVAHAIEISGKNLLIISFFIGFLGTTKAISDLNSKS
Ga0209534_1044127513300025880Pelagic MarineSFNSENNNQKKGSIFMAIIVLAISYLWINSTNYWYVAHAIEISGKNLLIISFFIGFLGTTKAISDLNSKS
Ga0209632_1042526823300025886Pelagic MarineRASFNGDNKSQKQGSIFMTIIILALSYSWINASGYWYIANGIEISGKNLLVISFFIGFFCTSKKITDLINERK
Ga0209631_1029586513300025890Pelagic MarineQKKGSIFMAVIILVISYFWINSTGYWYVAHAIEISGKNLLIISFFIGFLGTTKSISDLNPKS
Ga0209631_1041344823300025890Pelagic MarineIFMAVIVLAISYLWINSTGYWYNAQAIQISGKNLLIISFFIGFLGTTKSISDLNPKS
Ga0209630_1023445533300025892Pelagic MarineGIFAPILAWFSGTGLRASFNGDNKTQKQGSIFMTIIILALSYLWINASGYWYIANEIEISGKNLLVISFFIGFLSTAKTISQIKKN
Ga0209630_1025893533300025892Pelagic MarineATFNIENNNQKKGSIFMAVIVLAISYLWINSTSYWFVSHAIEISGKNLLIISFFIGFFCTTKKITNLINETK
Ga0209335_1036424013300025894Pelagic MarineTGLRASFNSDNNQTKGSIFMAVIILALSFLWINSTGYWYNAHAIEISGKNLLIISFFIGFLGTTKSISDINSKS
Ga0209425_1008516213300025897Pelagic MarineSFNGDNKSQRQGSIFMTIIILALSYLWINASGYWYIANGIEISGKNLLVISFFIGFFCTSKKITDLINERK
Ga0209425_1020894413300025897Pelagic MarineGLRASFNGNNKSQRQGSIFMAIIILALSYLWINASGYWYIANGIEISGKNLLVISFFIGFLSTTKTISEKNS
Ga0209425_1021519513300025897Pelagic MarineWFAGTGLRASFNSENNNQKKGSIFMAIIVLAISYLWINSAGYWYVAHAIEISGKNLLIISFFFGFLGTTKSISDLNPKS
Ga0209425_1040430823300025897Pelagic MarineGIVAPILGWFAGTGLRASFNSENNNQKKGSIFMATILLAISYLWINSTGYWFVANSIEISGKNLLIISFLIGFFCTTKKITNLINETK
Ga0209425_1043107523300025897Pelagic MarineSFNGDNKSQRQGSIFMTIIILALSYLWINASGYWYIANGIEISGKNLLVISFFIGFLSTTKTISQIKKY
Ga0209192_1028176013300027752MarineRASFNSENNNQKKGSIFMAVILLAISYLWINTTSYWYVADVIEISGKNLLVISFFIGFLSTVKAISEINKN
Ga0209502_1022325533300027780MarineNTSISGIVAPILAWFAGTGLRASFNSENNNHKKGSIFMTVILLAISYLWINTTSYWYVANVIEISGKNLLVISFFIGFLSTVKAISEINKN
Ga0209830_1019779333300027791MarineNNQKKGSIFMAVILLAISYLWINTTSYWYVANEIEISGKNLLVISFFIGFLSTVKAISEINKN
Ga0209091_1024683833300027801MarineNTSISGIVAPILAWFAGTGLRASFNSENNNQKKGSIFMAVILLAVSYLWINSTGYWYVANEIEISGKNLLVISFFIGFLSTVKTISEINKN
Ga0256411_111173633300028134SeawaterGIVAPMLAWFAGTGLRASFNSENNNQKKGSVFMAVIILAISYFWINSTGYWYIAHAIEISGKNLLIISFFIGFLGTTKSISDINSNS
Ga0228606_107322133300028135SeawaterASFNSDNKQTKGGIFMAVILLATSYLWINSTGYWFVAHAIEISGKNLLIISFFIGFLSTTKSIAELNTNS
Ga0228646_113871823300028280SeawaterNTSISGIVAPILTWFAGTGLRASFNSDNKQTKGGIFMAVILLATSYLWINSTGYWFVAHAIEISGKNLLIISFFIGFLSTTKSISDINSKS
Ga0228617_114288523300028297SeawaterVNTSISGITAPILAWFAGTGLRASFNTDNNQKKGSIFMAVIILVISYLWINSTGYWYVAHAIEISGKNLLIISFFIGFLGTTKSISDFNSKS
Ga0228639_113025113300028397SeawaterIFMAVILLATSYVWINSTGYWFVAHAIEISGKNLLIISFFIGFLSTTKSISDINSKS
Ga0302125_1005381653300031638MarineWFAGTGLRASFNSENNNQKKGSIFMAVILLAISYLWINTTGYWYVANEIEISGKNLLVISFFIGFLSTVKAISQINKN
Ga0315322_1072801823300031766SeawaterNTSINTNVSGIVAPILAWFAGTGLRASFNSENNNQKKGSIFMAVIVLAISYLWINSTGYWYVAHAIEISGKNLLIISFFIGFLGTTKSISDINSKP
Ga0315331_1073361923300031774SeawaterKKGSIFMAVIILVISYLWINSTGYWYIAHAIEISGKNLLIISFFIGFLGTTKSISDINSK
Ga0315326_1067556813300031775SeawaterMSGIVAPILAWFSGTGLRASFNNEHSIQKKGSIFMAVIFLALSYIWVNSTGYWYVAHAIEISGKNLLIISFFIGFLSTTKTISEINFKS
Ga0315321_1063390723300032088SeawaterIVAPILAWFAGTGLRASFNSENNNQKKGSIFMAVIILVISYLWINSTGYWYIAHAIEISGKNLLIISFFIGFLGTTKSISDINSKP


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