NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300000316

3300000316: Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface Sediment Feb2011 Site B2 Cattail



Overview

Basic Information
IMG/M Taxon OID3300000316 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0063443 | Gp0053971 | Ga0026048
Sample NameWetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface Sediment Feb2011 Site B2 Cattail
Sequencing StatusDraft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size90589564
Sequencing Scaffolds25
Novel Protein Genes25
Associated Families25

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula → Methanoregula boonei1
Not Available8
All Organisms → cellular organisms → Bacteria → FCB group1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → unclassified Bacteroides → Bacteroides sp.1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria5
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Citrifermentans → Citrifermentans bemidjiense1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → unclassified Geobacteraceae → Geobacteraceae bacterium1
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameWetland Microbial Communities From Twitchell Island In The Sacramento Delta
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Wetlands → Sediment → Wetland → Wetland Microbial Communities From Twitchell Island In The Sacramento Delta

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biomesaline wetlandsediment
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Sediment (saline)

Location Information
LocationTwitchell Island in the Sacramento/San Joaquin Delta, CA
CoordinatesLat. (o)38.10726Long. (o)-121.648538Alt. (m)N/ADepth (m).1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001286Metagenome731Y
F003085Metagenome / Metatranscriptome508Y
F007558Metagenome / Metatranscriptome349Y
F012756Metagenome / Metatranscriptome277Y
F012885Metagenome / Metatranscriptome276Y
F031716Metagenome182Y
F034003Metagenome176Y
F047753Metagenome / Metatranscriptome149N
F052021Metagenome / Metatranscriptome143Y
F052687Metagenome142Y
F054979Metagenome / Metatranscriptome139Y
F058543Metagenome135N
F059187Metagenome / Metatranscriptome134Y
F060457Metagenome / Metatranscriptome133Y
F061489Metagenome131N
F067458Metagenome125Y
F080113Metagenome / Metatranscriptome115Y
F082880Metagenome / Metatranscriptome113Y
F086362Metagenome111Y
F092937Metagenome / Metatranscriptome107N
F094847Metagenome / Metatranscriptome105Y
F096267Metagenome / Metatranscriptome105Y
F098776Metagenome / Metatranscriptome103Y
F103514Metagenome101N
F103815Metagenome101Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
WSSedB2CaDRAFT_1001227All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula → Methanoregula boonei1997Open in IMG/M
WSSedB2CaDRAFT_1001908Not Available1669Open in IMG/M
WSSedB2CaDRAFT_1003855Not Available1225Open in IMG/M
WSSedB2CaDRAFT_1004216All Organisms → cellular organisms → Bacteria → FCB group1172Open in IMG/M
WSSedB2CaDRAFT_1006256All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → unclassified Bacteroides → Bacteroides sp.979Open in IMG/M
WSSedB2CaDRAFT_1006277All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria978Open in IMG/M
WSSedB2CaDRAFT_1007004All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium928Open in IMG/M
WSSedB2CaDRAFT_1007043All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria926Open in IMG/M
WSSedB2CaDRAFT_1007296Not Available913Open in IMG/M
WSSedB2CaDRAFT_1009943All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria798Open in IMG/M
WSSedB2CaDRAFT_1010431All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Citrifermentans → Citrifermentans bemidjiense783Open in IMG/M
WSSedB2CaDRAFT_1012758All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi721Open in IMG/M
WSSedB2CaDRAFT_1012920All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium716Open in IMG/M
WSSedB2CaDRAFT_1013407Not Available706Open in IMG/M
WSSedB2CaDRAFT_1016843All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → unclassified Geobacteraceae → Geobacteraceae bacterium644Open in IMG/M
WSSedB2CaDRAFT_1016951Not Available642Open in IMG/M
WSSedB2CaDRAFT_1017583Not Available633Open in IMG/M
WSSedB2CaDRAFT_1018302All Organisms → cellular organisms → Bacteria623Open in IMG/M
WSSedB2CaDRAFT_1018991Not Available615Open in IMG/M
WSSedB2CaDRAFT_1019973All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium602Open in IMG/M
WSSedB2CaDRAFT_1020472All Organisms → cellular organisms → Bacteria597Open in IMG/M
WSSedB2CaDRAFT_1023033All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria569Open in IMG/M
WSSedB2CaDRAFT_1026710Not Available537Open in IMG/M
WSSedB2CaDRAFT_1027592All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria530Open in IMG/M
WSSedB2CaDRAFT_1030640All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium509Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
WSSedB2CaDRAFT_1001227WSSedB2CaDRAFT_10012274F067458MKRLVFAGLIFLVLLQGIWFAAADDSPDYAKIVVVHLTINKSSITEKSVEMRYGHPPNIEARNGDFKGTLKTADGSTIREFNLWDPRYQLGDVLEKDNESSGYLSGYMTYSDNADLVLILPYYENQMTFELYDKKTGTLLKKVNMSQAITKFQSNYPKDPGSISVSPIQFDKSVLYVITGVVISILIIGMILSMVRKK*
WSSedB2CaDRAFT_1001908WSSedB2CaDRAFT_10019083F103815LARVQILKHAFGQLLPSELHTTQQLWKALRRGMGSAEQMLRFLAHSCKRSLLGDYTCLRPAP*
WSSedB2CaDRAFT_1003855WSSedB2CaDRAFT_10038551F058543METVTISANINEKKKVEFFQTMESLTGLVENQCNDLDIRVKDDNNLIIKITFAGKDQMEKNFYTGEFNILKGTVKSLCEDVRIKINETAVNNN*
WSSedB2CaDRAFT_1004216WSSedB2CaDRAFT_10042161F052687MGRFLTIIIILTALGGGIYYLLSMETVEDVKVTGKLQISHQFGSYVMASQKDDAPYYAVVEGKIKNNLGKPIKNVFIKYMIAGQETSATVFDLAPGQEIKFNTSGVATSASNPEYDFVGLYYD*
WSSedB2CaDRAFT_1006256WSSedB2CaDRAFT_10062561F086362CEKNEDPGDWIKSNYSGTYTNTEYNENLIGEFSAGIYEDKAITDEIKQLKYGRVEIDFQYNGGGLIYFMPLFYYGSVNKNNYDDDAEEPKFHMAIEIGHYNVIPFPVEYLFYTISTFRQPQYCRDTFSPVITGEDYTLIVDKKPEGMILQLKNEKNILNIFPHAFFPDSSQLFFNDITSYTDRNNGDSLKNVLMVGKGFAGIDKGIHDFNGQVTSLRIFKYTITNPDSGYELKHVRNQHTENQQVIYTARDKTFGNDKFLILKYQFYPYKFLEGELIPGGEMQTGESAKMQNDQSANCYLKSSDIGFYKVNICTIDKDNNILRSSV
WSSedB2CaDRAFT_1006277WSSedB2CaDRAFT_10062772F060457MPKDNADPRTSSSDLGIFLSTIFHIASIACVPFLVHGTVNGNMYACGLLLVWTIYYSIRLAKSRKLLGVAFFVMTLSAVVFGIYNFGLMSQYKNAKIYLEEEQLFCRETTYETLLLKYETEKSMISASFRICLDKEHALSETCIKEVNQATSLNEVMLGNRLLRLSNCVNSLTTKEKSVDRLTHHPWVKFWLGFATAQVFRLKAEG*
WSSedB2CaDRAFT_1007004WSSedB2CaDRAFT_10070041F080113YNAAALQRFFATMKALEPAYKQDDDVAYTWATKGRVTKCSIYLESPAAGGKPGTVAMVGCEANGVSSLPAPSAADPKGSASSSQDPKHISDVMDLFRKQSERARSTLAKQ*
WSSedB2CaDRAFT_1007043WSSedB2CaDRAFT_10070431F092937LLFLLVLMLGCANTEPYRVAVTVEPMVRDCACLGYISEISDMGAPQINPKFTYDAQERVLRKADMMNATHLVWIGDYPFAATAMIYRCSN*
WSSedB2CaDRAFT_1007296WSSedB2CaDRAFT_10072961F003085MYNGGRRTRPGNWPQSRRYADIGRQQSCPRQGKWTGHHRGLRAGHVDKWVIRELGRASRLLGNHRRSKGDRRNQHPGVSWPTRPVDEPTPVQTGRDTKNASTQGTGRQPEADRPGRTKAVVATHSTAGQGRALARRRGEPKPKGPTITLAGAREGNAGHDVCAKERQEGH*
WSSedB2CaDRAFT_1009943WSSedB2CaDRAFT_10099432F047753MMKKIIRILEGLKVDDTWLRVAPFALAGCRKESYGKLTRLCRRKETLMAVVVAGVIGLYSAKKHVELCKKAVKAGRNASGDSDRELNKYLDAIWRVYLLDTSIDKQRLIEKAIGYVSGKLDQELSHSLTEAKKEYKAIIQQIMGAVQAGTGHSENAVHGYLSAFLNSIGCTTLGGKRFTRQNISK*
WSSedB2CaDRAFT_1010431WSSedB2CaDRAFT_10104311F082880MNAKKLERAIALGKRVEHFFVALVGADGFPYVNPARQIEQVAENQFAIEEWICPLTVKHLSENPKMAVLIWDPAADDGYEILGEALMFESQAYLNGFAPGVEEDAYLPQVKRKLIIRAEKITAFSHALRCDDIQLLAGAKRTMTSAAHDDSSREIPFCTYAPEWAEHARFDRSDDACDDGRAGRPET*
WSSedB2CaDRAFT_1012758WSSedB2CaDRAFT_10127581F061489MVNIGLMIAGILGVIVGIVLIAPSGALGTALGAMFLL
WSSedB2CaDRAFT_1012920WSSedB2CaDRAFT_10129201F001286MLQPALNWLRTRNDPLRNVVNAEQWIAALPVNDLMAVQKEALDLVAAFPGVRTEIATPQVEALLKVDARLEQVIAQLTAQYTANYQKSSAIESRLWHAVFDLVKAFTTAYGLCLKAGYPSAENKHWRAVLPWVLVRLAHYKGLDGRYRLFRYGHWIPAQWREFHELYEFARMRGWQREQLVFGAGGFGRPGVCVEHVYLQTLLLMRLDSGNFTP
WSSedB2CaDRAFT_1013407WSSedB2CaDRAFT_10134071F012885MRIDLAANRTTLEVSGRAWSRETADMPYRIRWEGHGVYRRFYGVVTRKEFRDAYAEMCGDVRYEGIRYIISDYLEARPDPGLTELDLRAQAELERLRFYDSPDTVQAMVATDPKILAYIKYYESLRVSPHCLGHFATIADARHWIAGNPRMGWSRPPPSIASAATTLHR*
WSSedB2CaDRAFT_1016843WSSedB2CaDRAFT_10168431F031716YGFGKISSHNKEYHCMSRFSPGPWHVEEENGSYGVFSNDALLAVALSDDVKDKDAAKANAHLMAAAPRLLEVIKAIKEHLDNNLIVTGEGLKINDSHLRESIIDAILKAEGYRL*
WSSedB2CaDRAFT_1016951WSSedB2CaDRAFT_10169511F054979VIESAAEKFGVPDEVLDLIGRDFISQMVEDFPSLLLPPIMSTLKQEYVRNGLEWVRQNVLPLQKHFLVLKHMYGV*
WSSedB2CaDRAFT_1017583WSSedB2CaDRAFT_10175831F103514MKEDIIIKKVGLNLKQNKKYIEIEIPGDEILKSVDADSKDFENLVKLK
WSSedB2CaDRAFT_1018302WSSedB2CaDRAFT_10183022F034003MKKRKKRNPVITKSNQLSFDFNINDPIEIHTPKSDISDLRKELAWEHRPMIEIXXS*
WSSedB2CaDRAFT_1018991WSSedB2CaDRAFT_10189911F012756MRIRPAKAEELKPTPRERALSPRQLAALQRDEELRKALARLKSDEDILAIELDPAEKIPTMRAAVKKAIAAHRPGTNMAIRGRTIYVSTGPLP
WSSedB2CaDRAFT_1019973WSSedB2CaDRAFT_10199732F096267VLKNKHQVVSQGVRRFGKRSIFKICEHLQKPHNARSRREARFSNIL
WSSedB2CaDRAFT_1020472WSSedB2CaDRAFT_10204722F052021MKKNKEIELDCSKNCKSVVQACEAEGRSRSECENRYNQCVSNCTFA*
WSSedB2CaDRAFT_1023033WSSedB2CaDRAFT_10230332F007558LLEVLESAFQNGDVHATQQMGVNMSNAVKREGVVIIQNQNVEVLARIMPSMVKTLKLCDAMESSWRSQDVITIDPQRPQLPPPGEEDDTDPVDACCSWLYDNHFKWQDMQDLMKARYLEYVISRFKTKTEAAKWLGVGSTYLCKLSKTTMNN*
WSSedB2CaDRAFT_1026710WSSedB2CaDRAFT_10267101F059187TPNQPKRLIGLSQKASSQARVLLNGPTRTNALPVYRANLNHPVKFAEHGNAASPARPRDRADLTARRVRGRSFGKTEEANASGNALDRPTSVWSEMVG*
WSSedB2CaDRAFT_1027592WSSedB2CaDRAFT_10275921F094847MQKDFTVIFSSSDKKAARDGILFPLTAVDSAYATGPIRYVTTNLLEKLGYLGPNAFGGLSISPQVSQLFSAALEIFKRGELTEKGDYPYVGDVESPTGTHTVWISPNSTRG
WSSedB2CaDRAFT_1030640WSSedB2CaDRAFT_10306401F098776MSAKYFDFTTPKFFLFRNQSKRLSIPQYHILILAWCALVILYGEPGLIPTPGHSEK*

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