Sample 3300000316

Overview

Basic Information
IMG/M Taxon OID	3300000316 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063443 \| Gp0053971 \| Ga0026048
Sample Name	Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface Sediment Feb2011 Site B2 Cattail
Sequencing Status	Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Dataset Contents
Total Genome Size	90589564
Sequencing Scaffolds	25
Novel Protein Genes	25
Associated Families	25

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula → Methanoregula boonei	1
Not Available	8
All Organisms → cellular organisms → Bacteria → FCB group	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → unclassified Bacteroides → Bacteroides sp.	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	5
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Citrifermentans → Citrifermentans bemidjiense	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → unclassified Geobacteraceae → Geobacteraceae bacterium	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Wetland Microbial Communities From Twitchell Island In The Sacramento Delta
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland → Wetland Microbial Communities From Twitchell Island In The Sacramento Delta

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → saline wetland → sediment
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Sediment (saline)

Location Information
Location	Twitchell Island in the Sacramento/San Joaquin Delta, CA
Coordinates	Lat. (^o)	38.10726	Long. (^o)	-121.648538	Alt. (m)	N/A	Depth (m)	.1
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F001286	Metagenome	731	Y
F003085	Metagenome / Metatranscriptome	508	Y
F007558	Metagenome / Metatranscriptome	349	Y
F012756	Metagenome / Metatranscriptome	277	Y
F012885	Metagenome / Metatranscriptome	276	Y
F031716	Metagenome	182	Y
F034003	Metagenome	176	Y
F047753	Metagenome / Metatranscriptome	149	N
F052021	Metagenome / Metatranscriptome	143	Y
F052687	Metagenome	142	Y
F054979	Metagenome / Metatranscriptome	139	Y
F058543	Metagenome	135	N
F059187	Metagenome / Metatranscriptome	134	Y
F060457	Metagenome / Metatranscriptome	133	Y
F061489	Metagenome	131	N
F067458	Metagenome	125	Y
F080113	Metagenome / Metatranscriptome	115	Y
F082880	Metagenome / Metatranscriptome	113	Y
F086362	Metagenome	111	Y
F092937	Metagenome / Metatranscriptome	107	N
F094847	Metagenome / Metatranscriptome	105	Y
F096267	Metagenome / Metatranscriptome	105	Y
F098776	Metagenome / Metatranscriptome	103	Y
F103514	Metagenome	101	N
F103815	Metagenome	101	Y

Family

Category

Number of Sequences

3D Structure?

F001286

Metagenome

731

F003085

Metagenome / Metatranscriptome

508

F007558

Metagenome / Metatranscriptome

349

F012756

Metagenome / Metatranscriptome

277

F012885

Metagenome / Metatranscriptome

276

F031716

Metagenome

182

F034003

Metagenome

176

F047753

Metagenome / Metatranscriptome

149

F052021

Metagenome / Metatranscriptome

143

F052687

Metagenome

142

F054979

Metagenome / Metatranscriptome

139

F058543

Metagenome

135

F059187

Metagenome / Metatranscriptome

134

F060457

Metagenome / Metatranscriptome

133

F061489

Metagenome

131

F067458

Metagenome

125

F080113

Metagenome / Metatranscriptome

115

F082880

Metagenome / Metatranscriptome

113

F086362

Metagenome

111

F092937

Metagenome / Metatranscriptome

107

F094847

Metagenome / Metatranscriptome

105

F096267

Metagenome / Metatranscriptome

105

F098776

Metagenome / Metatranscriptome

103

F103514

Metagenome

101

F103815

Metagenome

101

Scaffold	Taxonomy	Length	IMG/M Link
WSSedB2CaDRAFT_1001227	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula → Methanoregula boonei	1997	Open in IMG/M
WSSedB2CaDRAFT_1001908	Not Available	1669	Open in IMG/M
WSSedB2CaDRAFT_1003855	Not Available	1225	Open in IMG/M
WSSedB2CaDRAFT_1004216	All Organisms → cellular organisms → Bacteria → FCB group	1172	Open in IMG/M
WSSedB2CaDRAFT_1006256	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → unclassified Bacteroides → Bacteroides sp.	979	Open in IMG/M
WSSedB2CaDRAFT_1006277	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	978	Open in IMG/M
WSSedB2CaDRAFT_1007004	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	928	Open in IMG/M
WSSedB2CaDRAFT_1007043	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	926	Open in IMG/M
WSSedB2CaDRAFT_1007296	Not Available	913	Open in IMG/M
WSSedB2CaDRAFT_1009943	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	798	Open in IMG/M
WSSedB2CaDRAFT_1010431	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Citrifermentans → Citrifermentans bemidjiense	783	Open in IMG/M
WSSedB2CaDRAFT_1012758	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	721	Open in IMG/M
WSSedB2CaDRAFT_1012920	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	716	Open in IMG/M
WSSedB2CaDRAFT_1013407	Not Available	706	Open in IMG/M
WSSedB2CaDRAFT_1016843	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → unclassified Geobacteraceae → Geobacteraceae bacterium	644	Open in IMG/M
WSSedB2CaDRAFT_1016951	Not Available	642	Open in IMG/M
WSSedB2CaDRAFT_1017583	Not Available	633	Open in IMG/M
WSSedB2CaDRAFT_1018302	All Organisms → cellular organisms → Bacteria	623	Open in IMG/M
WSSedB2CaDRAFT_1018991	Not Available	615	Open in IMG/M
WSSedB2CaDRAFT_1019973	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	602	Open in IMG/M
WSSedB2CaDRAFT_1020472	All Organisms → cellular organisms → Bacteria	597	Open in IMG/M
WSSedB2CaDRAFT_1023033	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	569	Open in IMG/M
WSSedB2CaDRAFT_1026710	Not Available	537	Open in IMG/M
WSSedB2CaDRAFT_1027592	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	530	Open in IMG/M
WSSedB2CaDRAFT_1030640	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	509	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

WSSedB2CaDRAFT_1001227

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula → Methanoregula boonei

1997

Open in IMG/M

WSSedB2CaDRAFT_1001908

Not Available

1669

Open in IMG/M

WSSedB2CaDRAFT_1003855

Not Available

1225

Open in IMG/M

WSSedB2CaDRAFT_1004216

All Organisms → cellular organisms → Bacteria → FCB group

1172

Open in IMG/M

WSSedB2CaDRAFT_1006256

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → unclassified Bacteroides → Bacteroides sp.

979

Open in IMG/M

WSSedB2CaDRAFT_1006277

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria

978

Open in IMG/M

WSSedB2CaDRAFT_1007004

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium

928

Open in IMG/M

WSSedB2CaDRAFT_1007043

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria

926

Open in IMG/M

WSSedB2CaDRAFT_1007296

Not Available

913

Open in IMG/M

WSSedB2CaDRAFT_1009943

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria

798

Open in IMG/M

WSSedB2CaDRAFT_1010431

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Citrifermentans → Citrifermentans bemidjiense

783

Open in IMG/M

WSSedB2CaDRAFT_1012758

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi

721

Open in IMG/M

WSSedB2CaDRAFT_1012920

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium

716

Open in IMG/M

WSSedB2CaDRAFT_1013407

Not Available

706

Open in IMG/M

WSSedB2CaDRAFT_1016843

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → unclassified Geobacteraceae → Geobacteraceae bacterium

644

Open in IMG/M

WSSedB2CaDRAFT_1016951

Not Available

642

Open in IMG/M

WSSedB2CaDRAFT_1017583

Not Available

633

Open in IMG/M

WSSedB2CaDRAFT_1018302

All Organisms → cellular organisms → Bacteria

623

Open in IMG/M

WSSedB2CaDRAFT_1018991

Not Available

615

Open in IMG/M

WSSedB2CaDRAFT_1019973

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium

602

Open in IMG/M

WSSedB2CaDRAFT_1020472

All Organisms → cellular organisms → Bacteria

597

Open in IMG/M

WSSedB2CaDRAFT_1023033

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria

569

Open in IMG/M

WSSedB2CaDRAFT_1026710

Not Available

537

Open in IMG/M

WSSedB2CaDRAFT_1027592

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria

530

Open in IMG/M

WSSedB2CaDRAFT_1030640

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium

509

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
WSSedB2CaDRAFT_1001227	WSSedB2CaDRAFT_10012274	F067458	MKRLVFAGLIFLVLLQGIWFAAADDSPDYAKIVVVHLTINKSSITEKSVEMRYGHPPNIEARNGDFKGTLKTADGSTIREFNLWDPRYQLGDVLEKDNESSGYLSGYMTYSDNADLVLILPYYENQMTFELYDKKTGTLLKKVNMSQAITKFQSNYPKDPGSISVSPIQFDKSVLYVITGVVISILIIGMILSMVRKK*
WSSedB2CaDRAFT_1001908	WSSedB2CaDRAFT_10019083	F103815	LARVQILKHAFGQLLPSELHTTQQLWKALRRGMGSAEQMLRFLAHSCKRSLLGDYTCLRPAP*
WSSedB2CaDRAFT_1003855	WSSedB2CaDRAFT_10038551	F058543	METVTISANINEKKKVEFFQTMESLTGLVENQCNDLDIRVKDDNNLIIKITFAGKDQMEKNFYTGEFNILKGTVKSLCEDVRIKINETAVNNN*
WSSedB2CaDRAFT_1004216	WSSedB2CaDRAFT_10042161	F052687	MGRFLTIIIILTALGGGIYYLLSMETVEDVKVTGKLQISHQFGSYVMASQKDDAPYYAVVEGKIKNNLGKPIKNVFIKYMIAGQETSATVFDLAPGQEIKFNTSGVATSASNPEYDFVGLYYD*
WSSedB2CaDRAFT_1006256	WSSedB2CaDRAFT_10062561	F086362	CEKNEDPGDWIKSNYSGTYTNTEYNENLIGEFSAGIYEDKAITDEIKQLKYGRVEIDFQYNGGGLIYFMPLFYYGSVNKNNYDDDAEEPKFHMAIEIGHYNVIPFPVEYLFYTISTFRQPQYCRDTFSPVITGEDYTLIVDKKPEGMILQLKNEKNILNIFPHAFFPDSSQLFFNDITSYTDRNNGDSLKNVLMVGKGFAGIDKGIHDFNGQVTSLRIFKYTITNPDSGYELKHVRNQHTENQQVIYTARDKTFGNDKFLILKYQFYPYKFLEGELIPGGEMQTGESAKMQNDQSANCYLKSSDIGFYKVNICTIDKDNNILRSSV
WSSedB2CaDRAFT_1006277	WSSedB2CaDRAFT_10062772	F060457	MPKDNADPRTSSSDLGIFLSTIFHIASIACVPFLVHGTVNGNMYACGLLLVWTIYYSIRLAKSRKLLGVAFFVMTLSAVVFGIYNFGLMSQYKNAKIYLEEEQLFCRETTYETLLLKYETEKSMISASFRICLDKEHALSETCIKEVNQATSLNEVMLGNRLLRLSNCVNSLTTKEKSVDRLTHHPWVKFWLGFATAQVFRLKAEG*
WSSedB2CaDRAFT_1007004	WSSedB2CaDRAFT_10070041	F080113	YNAAALQRFFATMKALEPAYKQDDDVAYTWATKGRVTKCSIYLESPAAGGKPGTVAMVGCEANGVSSLPAPSAADPKGSASSSQDPKHISDVMDLFRKQSERARSTLAKQ*
WSSedB2CaDRAFT_1007043	WSSedB2CaDRAFT_10070431	F092937	LLFLLVLMLGCANTEPYRVAVTVEPMVRDCACLGYISEISDMGAPQINPKFTYDAQERVLRKADMMNATHLVWIGDYPFAATAMIYRCSN*
WSSedB2CaDRAFT_1007296	WSSedB2CaDRAFT_10072961	F003085	MYNGGRRTRPGNWPQSRRYADIGRQQSCPRQGKWTGHHRGLRAGHVDKWVIRELGRASRLLGNHRRSKGDRRNQHPGVSWPTRPVDEPTPVQTGRDTKNASTQGTGRQPEADRPGRTKAVVATHSTAGQGRALARRRGEPKPKGPTITLAGAREGNAGHDVCAKERQEGH*
WSSedB2CaDRAFT_1009943	WSSedB2CaDRAFT_10099432	F047753	MMKKIIRILEGLKVDDTWLRVAPFALAGCRKESYGKLTRLCRRKETLMAVVVAGVIGLYSAKKHVELCKKAVKAGRNASGDSDRELNKYLDAIWRVYLLDTSIDKQRLIEKAIGYVSGKLDQELSHSLTEAKKEYKAIIQQIMGAVQAGTGHSENAVHGYLSAFLNSIGCTTLGGKRFTRQNISK*
WSSedB2CaDRAFT_1010431	WSSedB2CaDRAFT_10104311	F082880	MNAKKLERAIALGKRVEHFFVALVGADGFPYVNPARQIEQVAENQFAIEEWICPLTVKHLSENPKMAVLIWDPAADDGYEILGEALMFESQAYLNGFAPGVEEDAYLPQVKRKLIIRAEKITAFSHALRCDDIQLLAGAKRTMTSAAHDDSSREIPFCTYAPEWAEHARFDRSDDACDDGRAGRPET*
WSSedB2CaDRAFT_1012758	WSSedB2CaDRAFT_10127581	F061489	MVNIGLMIAGILGVIVGIVLIAPSGALGTALGAMFLL
WSSedB2CaDRAFT_1012920	WSSedB2CaDRAFT_10129201	F001286	MLQPALNWLRTRNDPLRNVVNAEQWIAALPVNDLMAVQKEALDLVAAFPGVRTEIATPQVEALLKVDARLEQVIAQLTAQYTANYQKSSAIESRLWHAVFDLVKAFTTAYGLCLKAGYPSAENKHWRAVLPWVLVRLAHYKGLDGRYRLFRYGHWIPAQWREFHELYEFARMRGWQREQLVFGAGGFGRPGVCVEHVYLQTLLLMRLDSGNFTP
WSSedB2CaDRAFT_1013407	WSSedB2CaDRAFT_10134071	F012885	MRIDLAANRTTLEVSGRAWSRETADMPYRIRWEGHGVYRRFYGVVTRKEFRDAYAEMCGDVRYEGIRYIISDYLEARPDPGLTELDLRAQAELERLRFYDSPDTVQAMVATDPKILAYIKYYESLRVSPHCLGHFATIADARHWIAGNPRMGWSRPPPSIASAATTLHR*
WSSedB2CaDRAFT_1016843	WSSedB2CaDRAFT_10168431	F031716	YGFGKISSHNKEYHCMSRFSPGPWHVEEENGSYGVFSNDALLAVALSDDVKDKDAAKANAHLMAAAPRLLEVIKAIKEHLDNNLIVTGEGLKINDSHLRESIIDAILKAEGYRL*
WSSedB2CaDRAFT_1016951	WSSedB2CaDRAFT_10169511	F054979	VIESAAEKFGVPDEVLDLIGRDFISQMVEDFPSLLLPPIMSTLKQEYVRNGLEWVRQNVLPLQKHFLVLKHMYGV*
WSSedB2CaDRAFT_1017583	WSSedB2CaDRAFT_10175831	F103514	MKEDIIIKKVGLNLKQNKKYIEIEIPGDEILKSVDADSKDFENLVKLK
WSSedB2CaDRAFT_1018302	WSSedB2CaDRAFT_10183022	F034003	MKKRKKRNPVITKSNQLSFDFNINDPIEIHTPKSDISDLRKELAWEHRPMIEIXXS*
WSSedB2CaDRAFT_1018991	WSSedB2CaDRAFT_10189911	F012756	MRIRPAKAEELKPTPRERALSPRQLAALQRDEELRKALARLKSDEDILAIELDPAEKIPTMRAAVKKAIAAHRPGTNMAIRGRTIYVSTGPLP
WSSedB2CaDRAFT_1019973	WSSedB2CaDRAFT_10199732	F096267	VLKNKHQVVSQGVRRFGKRSIFKICEHLQKPHNARSRREARFSNIL
WSSedB2CaDRAFT_1020472	WSSedB2CaDRAFT_10204722	F052021	MKKNKEIELDCSKNCKSVVQACEAEGRSRSECENRYNQCVSNCTFA*
WSSedB2CaDRAFT_1023033	WSSedB2CaDRAFT_10230332	F007558	LLEVLESAFQNGDVHATQQMGVNMSNAVKREGVVIIQNQNVEVLARIMPSMVKTLKLCDAMESSWRSQDVITIDPQRPQLPPPGEEDDTDPVDACCSWLYDNHFKWQDMQDLMKARYLEYVISRFKTKTEAAKWLGVGSTYLCKLSKTTMNN*
WSSedB2CaDRAFT_1026710	WSSedB2CaDRAFT_10267101	F059187	TPNQPKRLIGLSQKASSQARVLLNGPTRTNALPVYRANLNHPVKFAEHGNAASPARPRDRADLTARRVRGRSFGKTEEANASGNALDRPTSVWSEMVG*
WSSedB2CaDRAFT_1027592	WSSedB2CaDRAFT_10275921	F094847	MQKDFTVIFSSSDKKAARDGILFPLTAVDSAYATGPIRYVTTNLLEKLGYLGPNAFGGLSISPQVSQLFSAALEIFKRGELTEKGDYPYVGDVESPTGTHTVWISPNSTRG
WSSedB2CaDRAFT_1030640	WSSedB2CaDRAFT_10306401	F098776	MSAKYFDFTTPKFFLFRNQSKRLSIPQYHILILAWCALVILYGEPGLIPTPGHSEK*

Scaffold ID

Protein ID

Family

Sequence

WSSedB2CaDRAFT_1001227

WSSedB2CaDRAFT_10012274

F067458

MKRLVFAGLIFLVLLQGIWFAAADDSPDYAKIVVVHLTINKSSITEKSVEMRYGHPPNIEARNGDFKGTLKTADGSTIREFNLWDPRYQLGDVLEKDNESSGYLSGYMTYSDNADLVLILPYYENQMTFELYDKKTGTLLKKVNMSQAITKFQSNYPKDPGSISVSPIQFDKSVLYVITGVVISILIIGMILSMVRKK*

WSSedB2CaDRAFT_1001908

WSSedB2CaDRAFT_10019083

F103815

LARVQILKHAFGQLLPSELHTTQQLWKALRRGMGSAEQMLRFLAHSCKRSLLGDYTCLRPAP*

WSSedB2CaDRAFT_1003855

WSSedB2CaDRAFT_10038551

F058543

METVTISANINEKKKVEFFQTMESLTGLVENQCNDLDIRVKDDNNLIIKITFAGKDQMEKNFYTGEFNILKGTVKSLCEDVRIKINETAVNNN*

WSSedB2CaDRAFT_1004216

WSSedB2CaDRAFT_10042161

F052687

MGRFLTIIIILTALGGGIYYLLSMETVEDVKVTGKLQISHQFGSYVMASQKDDAPYYAVVEGKIKNNLGKPIKNVFIKYMIAGQETSATVFDLAPGQEIKFNTSGVATSASNPEYDFVGLYYD*

WSSedB2CaDRAFT_1006256

WSSedB2CaDRAFT_10062561

F086362

CEKNEDPGDWIKSNYSGTYTNTEYNENLIGEFSAGIYEDKAITDEIKQLKYGRVEIDFQYNGGGLIYFMPLFYYGSVNKNNYDDDAEEPKFHMAIEIGHYNVIPFPVEYLFYTISTFRQPQYCRDTFSPVITGEDYTLIVDKKPEGMILQLKNEKNILNIFPHAFFPDSSQLFFNDITSYTDRNNGDSLKNVLMVGKGFAGIDKGIHDFNGQVTSLRIFKYTITNPDSGYELKHVRNQHTENQQVIYTARDKTFGNDKFLILKYQFYPYKFLEGELIPGGEMQTGESAKMQNDQSANCYLKSSDIGFYKVNICTIDKDNNILRSSV

WSSedB2CaDRAFT_1006277

WSSedB2CaDRAFT_10062772

F060457

MPKDNADPRTSSSDLGIFLSTIFHIASIACVPFLVHGTVNGNMYACGLLLVWTIYYSIRLAKSRKLLGVAFFVMTLSAVVFGIYNFGLMSQYKNAKIYLEEEQLFCRETTYETLLLKYETEKSMISASFRICLDKEHALSETCIKEVNQATSLNEVMLGNRLLRLSNCVNSLTTKEKSVDRLTHHPWVKFWLGFATAQVFRLKAEG*

WSSedB2CaDRAFT_1007004

WSSedB2CaDRAFT_10070041

F080113

YNAAALQRFFATMKALEPAYKQDDDVAYTWATKGRVTKCSIYLESPAAGGKPGTVAMVGCEANGVSSLPAPSAADPKGSASSSQDPKHISDVMDLFRKQSERARSTLAKQ*

WSSedB2CaDRAFT_1007043

WSSedB2CaDRAFT_10070431

F092937

LLFLLVLMLGCANTEPYRVAVTVEPMVRDCACLGYISEISDMGAPQINPKFTYDAQERVLRKADMMNATHLVWIGDYPFAATAMIYRCSN*

WSSedB2CaDRAFT_1007296

WSSedB2CaDRAFT_10072961

F003085

MYNGGRRTRPGNWPQSRRYADIGRQQSCPRQGKWTGHHRGLRAGHVDKWVIRELGRASRLLGNHRRSKGDRRNQHPGVSWPTRPVDEPTPVQTGRDTKNASTQGTGRQPEADRPGRTKAVVATHSTAGQGRALARRRGEPKPKGPTITLAGAREGNAGHDVCAKERQEGH*

WSSedB2CaDRAFT_1009943

WSSedB2CaDRAFT_10099432

F047753

MMKKIIRILEGLKVDDTWLRVAPFALAGCRKESYGKLTRLCRRKETLMAVVVAGVIGLYSAKKHVELCKKAVKAGRNASGDSDRELNKYLDAIWRVYLLDTSIDKQRLIEKAIGYVSGKLDQELSHSLTEAKKEYKAIIQQIMGAVQAGTGHSENAVHGYLSAFLNSIGCTTLGGKRFTRQNISK*

WSSedB2CaDRAFT_1010431

WSSedB2CaDRAFT_10104311

F082880

MNAKKLERAIALGKRVEHFFVALVGADGFPYVNPARQIEQVAENQFAIEEWICPLTVKHLSENPKMAVLIWDPAADDGYEILGEALMFESQAYLNGFAPGVEEDAYLPQVKRKLIIRAEKITAFSHALRCDDIQLLAGAKRTMTSAAHDDSSREIPFCTYAPEWAEHARFDRSDDACDDGRAGRPET*

WSSedB2CaDRAFT_1012758

WSSedB2CaDRAFT_10127581

F061489

MVNIGLMIAGILGVIVGIVLIAPSGALGTALGAMFLL

WSSedB2CaDRAFT_1012920

WSSedB2CaDRAFT_10129201

F001286

MLQPALNWLRTRNDPLRNVVNAEQWIAALPVNDLMAVQKEALDLVAAFPGVRTEIATPQVEALLKVDARLEQVIAQLTAQYTANYQKSSAIESRLWHAVFDLVKAFTTAYGLCLKAGYPSAENKHWRAVLPWVLVRLAHYKGLDGRYRLFRYGHWIPAQWREFHELYEFARMRGWQREQLVFGAGGFGRPGVCVEHVYLQTLLLMRLDSGNFTP

WSSedB2CaDRAFT_1013407

WSSedB2CaDRAFT_10134071

F012885

MRIDLAANRTTLEVSGRAWSRETADMPYRIRWEGHGVYRRFYGVVTRKEFRDAYAEMCGDVRYEGIRYIISDYLEARPDPGLTELDLRAQAELERLRFYDSPDTVQAMVATDPKILAYIKYYESLRVSPHCLGHFATIADARHWIAGNPRMGWSRPPPSIASAATTLHR*

WSSedB2CaDRAFT_1016843

WSSedB2CaDRAFT_10168431

F031716

YGFGKISSHNKEYHCMSRFSPGPWHVEEENGSYGVFSNDALLAVALSDDVKDKDAAKANAHLMAAAPRLLEVIKAIKEHLDNNLIVTGEGLKINDSHLRESIIDAILKAEGYRL*

WSSedB2CaDRAFT_1016951

WSSedB2CaDRAFT_10169511

F054979

VIESAAEKFGVPDEVLDLIGRDFISQMVEDFPSLLLPPIMSTLKQEYVRNGLEWVRQNVLPLQKHFLVLKHMYGV*

WSSedB2CaDRAFT_1017583

WSSedB2CaDRAFT_10175831

F103514

MKEDIIIKKVGLNLKQNKKYIEIEIPGDEILKSVDADSKDFENLVKLK

WSSedB2CaDRAFT_1018302

WSSedB2CaDRAFT_10183022

F034003

MKKRKKRNPVITKSNQLSFDFNINDPIEIHTPKSDISDLRKELAWEHRPMIEIXXS*

WSSedB2CaDRAFT_1018991

WSSedB2CaDRAFT_10189911

F012756

MRIRPAKAEELKPTPRERALSPRQLAALQRDEELRKALARLKSDEDILAIELDPAEKIPTMRAAVKKAIAAHRPGTNMAIRGRTIYVSTGPLP

WSSedB2CaDRAFT_1019973

WSSedB2CaDRAFT_10199732

F096267

VLKNKHQVVSQGVRRFGKRSIFKICEHLQKPHNARSRREARFSNIL

WSSedB2CaDRAFT_1020472

WSSedB2CaDRAFT_10204722

F052021

MKKNKEIELDCSKNCKSVVQACEAEGRSRSECENRYNQCVSNCTFA*

WSSedB2CaDRAFT_1023033

WSSedB2CaDRAFT_10230332

F007558

LLEVLESAFQNGDVHATQQMGVNMSNAVKREGVVIIQNQNVEVLARIMPSMVKTLKLCDAMESSWRSQDVITIDPQRPQLPPPGEEDDTDPVDACCSWLYDNHFKWQDMQDLMKARYLEYVISRFKTKTEAAKWLGVGSTYLCKLSKTTMNN*

WSSedB2CaDRAFT_1026710

WSSedB2CaDRAFT_10267101

F059187

TPNQPKRLIGLSQKASSQARVLLNGPTRTNALPVYRANLNHPVKFAEHGNAASPARPRDRADLTARRVRGRSFGKTEEANASGNALDRPTSVWSEMVG*

WSSedB2CaDRAFT_1027592

WSSedB2CaDRAFT_10275921

F094847

MQKDFTVIFSSSDKKAARDGILFPLTAVDSAYATGPIRYVTTNLLEKLGYLGPNAFGGLSISPQVSQLFSAALEIFKRGELTEKGDYPYVGDVESPTGTHTVWISPNSTRG

WSSedB2CaDRAFT_1030640

WSSedB2CaDRAFT_10306401

F098776

MSAKYFDFTTPKFFLFRNQSKRLSIPQYHILILAWCALVILYGEPGLIPTPGHSEK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300000316: Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface Sediment Feb2011 Site B2 Cattail

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences