Basic Information | |
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Family ID | F098776 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 103 |
Average Sequence Length | 55 residues |
Representative Sequence | MSVKYFDFTTPKFFLFRNQSKRLSIPQYHILILAWCALVILYGETGLSPTPGHSET |
Number of Associated Samples | 76 |
Number of Associated Scaffolds | 103 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 83.50 % |
% of genes near scaffold ends (potentially truncated) | 25.24 % |
% of genes from short scaffolds (< 2000 bps) | 85.44 % |
Associated GOLD sequencing projects | 69 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.32 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (93.204 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland (17.476 % of family members) |
Environment Ontology (ENVO) | Unclassified (33.010 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) (28.155 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Transmembrane (alpha-helical) | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 28.57% β-sheet: 0.00% Coil/Unstructured: 71.43% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.32 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Freshwater Sediment Wetland Freshwater Lake Sediment Sediment Freshwater Sediment Sediment Freshwater Estuarine Natural And Restored Wetlands Wetland Marine Soil Sediment (Intertidal) Groundwater Sediment Soil Untreated Peat Soil Natural And Restored Wetlands Deep Subsurface Peat Soil Sediment |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
WSSedA1TDRAFT_0272501 | 3300000094 | Wetland | MSVKYFDFTTPKFFLFRNQSKRLSIPQYHILILAWCALVILYGEPGPSPTFGHSEK* |
BS_KBA_SWE12_21mDRAFT_100097781 | 3300000124 | Marine | MSATYFDFTTPKFFLFRNQSKRLSIPQCHILILFWCALVILYDVTGLSSAPKHSET* |
BS_KBA_SWE12_21mDRAFT_100525942 | 3300000124 | Marine | MSATHFDFTTLKFFLFRNQSNRLSIPPCHILILFWCALVILYDVTGLSPAP* |
BS_KBA_SWE12_21mDRAFT_100673791 | 3300000124 | Marine | MSIKYFDFTTPQFFLFRNQSKRISIPQYLILFLFWCALVILYDVAGLSPAPEHSET* |
BS_KBA_SWE07_21mDRAFT_10371352 | 3300000134 | Marine | MSATHFDFTTLKFFLFRNQSNRLSIPPCHILILFWCALVILYDVTGLS |
WSSedA1BaDRAFT_10431391 | 3300000309 | Wetland | MSVTYFDFTTPKFFLFRNQAKHLSIPHYHILILAWCALVILYGETGLSPTPGHGEK* |
WSSedB2CaDRAFT_10306401 | 3300000316 | Wetland | MSAKYFDFTTPKFFLFRNQSKRLSIPQYHILILAWCALVILYGEPGLIPTPGHSEK* |
WSSedL1B2DRAFT_10183553 | 3300000894 | Wetland | MSVKYFDFTTPKFFLFRNQSKRLSIPQYHILILAWCALVI |
JGI20214J51088_101238461 | 3300003432 | Wetland | MSVKYFDAATPKFFLFRNQSKRLSIPQYHILILAWCALVILYGES |
JGI20214J51088_101843602 | 3300003432 | Wetland | MSIKYFDFTTPKFFLFRNQSKRLSIPQYHILILAWCALVILYGEPGPSPTPGHSEK* |
JGI20214J51088_102152971 | 3300003432 | Wetland | MSVKYFDFTTPKFFLFRNQSKRLSIPQYHILILAWCALVILYGEPGPIPTPGHSEK* |
JGI20214J51088_104101631 | 3300003432 | Wetland | MSVKYFDAATPKFFLFRNQSKRLSIPQYHILILAWCALVILYGESGPRPTPEHSET* |
JGI20214J51088_104469871 | 3300003432 | Wetland | MYVKHFDFTTPKFFLFRNQSKRHSIPQYPILILAWCARVILYGETGPSPTPGHCET* |
JGI20214J51088_105143042 | 3300003432 | Wetland | MSIKYFDFTTPKFFLFRNQSKRLSIPQYHILILAWCARVILYGESVLSPAPEHSET* |
JGI20214J51088_105877042 | 3300003432 | Wetland | MSVKYFDFTTPKFFLFRNQSKRLSIPQYHILILAWCALVILYGEPGPSPTPGHSEK* |
JGI20214J51088_108561552 | 3300003432 | Wetland | DFTTPKFFLFRNQSKRHSIPQYHILILAWCALVILYGETGLNPTPGHSET* |
JGI20214J51650_104794391 | 3300003541 | Wetland | MYVKHFDFTTPKFFLFRNQSKRHSIPQYPILILAWCARVIL |
JGI20214J51650_104916981 | 3300003541 | Wetland | FMSIKYFDFTTPKFFLFRNQSKRLSIPQYHILILAWCARVILYGESVLSPAPEHSET* |
JGI20214J51650_105521682 | 3300003541 | Wetland | MSIKYFDFTTPKFFLFRNQSKRLXIPQYHILILAWCALVILYGEPGPSPTPGHSEK* |
JGI20214J51650_106415642 | 3300003541 | Wetland | MSVKXFDFTTPKFFLFRNQSKRLSIPQYHILILAWCALVILYGEPGPSPTPEHSET* |
JGI20214J51650_110686091 | 3300003541 | Wetland | MSVKYFDFTTPKFFLFRNQSKRHSIPQYHILILAWCALVILYGEPGLNPTPGHSET* |
Ga0055437_102501621 | 3300004009 | Natural And Restored Wetlands | ISIPEVARMSIKYFDFTTPKFFLFRNQSKRHSIPQYHILIFAWCALVILYGEPGPSPTPGHSER* |
Ga0055493_100359822 | 3300004049 | Natural And Restored Wetlands | MSATYFDFTTPKFFLFRNQSKRLSIPQCHILILFWCALVILYDVTGLSPTPKHSET* |
Ga0055492_100601741 | 3300004051 | Natural And Restored Wetlands | MSATYLDFTTPKFFLFRNQSKRLSIPQCHILILFWCALVILYDVTGLSPAPKHSET* |
Ga0055500_100115751 | 3300004062 | Natural And Restored Wetlands | MSVKYFDFTTPKFFLFRNQSKRLSIPQYHILILAWCTLVILYGETGLSPAPGHSQT* |
Ga0055495_101668102 | 3300004146 | Natural And Restored Wetlands | MSIKYFDFITPQFFLFRNQSKRLSIPQSHILILFWCALVILYDVAGLSPAPEHSET* |
Ga0066603_101167762 | 3300004154 | Freshwater | FDFTTPKFFLFRNQSKRLSIPQYHILILAWCALVILYGEPGLSPTPGHSEK* |
Ga0068998_100018881 | 3300005213 | Natural And Restored Wetlands | MSVKYFDPTTPKFFLFRNQSKHLSIPQYHILILAWCALVILYGETGLSPTPGHSET* |
Ga0068996_100453652 | 3300005218 | Natural And Restored Wetlands | MSVKYFDFTTPKFFLFRNQSKRLSIPQYHILILAWCALVILYGETGLSPAPGHSET* |
Ga0069004_102406821 | 3300005219 | Natural And Restored Wetlands | MSVKYFDFTTPKFFLFRNQSKRHSIPQYHILILAWCALVILYGETGLNPTPGHSET* |
Ga0074473_106210473 | 3300005830 | Sediment (Intertidal) | MSATYFDFTTPKFFLFKNRSNRLSIPPCHILILFWCALVILYDVTGLNPTP* |
Ga0074471_102884751 | 3300005831 | Sediment (Intertidal) | MSATHFDFTTPKFFLFRNPLNLLSIPQCHILILFWCALVILYDVT |
Ga0074471_107222152 | 3300005831 | Sediment (Intertidal) | MSIKYFDFTTPQFFLFRNQSKRLSIPQCHILILFWCALVILYDVTGLSSAPKHSET* |
Ga0074472_105186343 | 3300005833 | Sediment (Intertidal) | MSIKYFDFTTPKFFLFRNQSRRLSIPQYHILILAWCALVILYGETGLSSTPGHSET* |
Ga0074472_107779064 | 3300005833 | Sediment (Intertidal) | MSVKYFDFTTPKFFLYRNRSKLLSIPQYHILILAWCALVILYGETGPSPTPG |
Ga0079303_100667121 | 3300006930 | Deep Subsurface | GVESMSVKYFDATTLKFFLFRNQSKHVSIPQYHILILAWSALVILYGETDPSPTTGHSET |
Ga0105105_101517642 | 3300009009 | Freshwater Sediment | MSVKYFDFTTPKFFLFRNLSKRLSIPQYHILILAWCALVILYGEPGLSSTPGHSEK* |
Ga0105093_105892881 | 3300009037 | Freshwater Sediment | MSVKYFDFTTPKFFLFRTLSKRLSIPQYHILILAWCALVILYGEPGLSSTPGHSEK* |
Ga0105090_100611092 | 3300009075 | Freshwater Sediment | MSVKYFDFTTPKFFLFRDLSKRLSIPQYHILILAWCALVILYGEPGP* |
Ga0105090_101016742 | 3300009075 | Freshwater Sediment | YFDFTTPKFFLFRNQSKRLSIPQYHILILAWCALVILYGEPGPSPTFGHSEK* |
Ga0105090_101597741 | 3300009075 | Freshwater Sediment | MSVKYFDFTTPKFFLFRNQSKLLSIPQYHILILAWCALVILYGESGLSPTLEHSET* |
Ga0105090_106191281 | 3300009075 | Freshwater Sediment | MSIKYFDFTTPKFFLFRNQSKRLSIPQYHILILAWCALVILYGEPGLSSTPGHSEK* |
Ga0105098_102114161 | 3300009081 | Freshwater Sediment | IKYFDFTTPKFFLFRNQSKRLSIPQYHILILAWCALVILYGEPGPSPTFGHSEK* |
Ga0105103_100476372 | 3300009085 | Freshwater Sediment | MSVKYFDFTTPKFFLFRNQSKRHSIPQYHILILAWCALVILYGETGLNPTPGHSEQ* |
Ga0115027_105784961 | 3300009131 | Wetland | MSVKYFDFTTPKFFLFRNLSKRLSIPQYHILILAWCALVILYGELGLSSTPGHSEK* |
Ga0115027_106408001 | 3300009131 | Wetland | MSAKYFDFTTPKFFLFRNQSKRHSIPQYHILILAWCALVILYGGTGLN* |
Ga0105091_106850771 | 3300009146 | Freshwater Sediment | MSVKYFDFTTPKFFLFRNLSKRLSIPQNHILILAWCALVILYGEPGLSSTPGHSEK* |
Ga0105102_100323102 | 3300009165 | Freshwater Sediment | MSIKYFDFTTPKFFLFRNQSKHLSIPQYHILILAWCALVILYGEPGPSPTFGHSEK* |
Ga0105102_104147891 | 3300009165 | Freshwater Sediment | MSVKYFDFTTPKFFLFRNQSKRHSIPQYHILILAWCALVILYGESGLSPTLEHSET* |
Ga0115028_102172811 | 3300009179 | Wetland | MSAKYFDFTTPKFFLFRNQSKRHSIPQYHILILAWCALVTLYGETGLN* |
Ga0136847_107048041 | 3300010391 | Freshwater Sediment | GLSSTNSIPEVERMSVKYFDFTTPKFFLFRNQSKRLSIPQYHILILAWCALVILYGESGLSPTPEHSET* |
Ga0137460_10186751 | 3300011408 | Soil | MSVKYFDFTTPKFFLFRNLSKRLSIPQYHILSLAWCALVILYGEPGLIPTPGHSEQ* |
Ga0173609_100593616 | 3300013315 | Sediment | MSIKYFDFTTPQFFLFRNQSKRISIPHYHILILFWCALVILYDVTGLSPTPKHSET* |
Ga0075315_10058043 | 3300014258 | Natural And Restored Wetlands | MSIKYFDFTTPQFFLFRNQSKHLSIPQYHILILAWCALVILYGEPGLSPTPKHSET* |
Ga0075349_10253992 | 3300014305 | Natural And Restored Wetlands | MSATYLDFTTPKFFLFRNQSKRLSIPQCHILILFWCALVILYDVTGLSSAPKHSET* |
Ga0075331_10918221 | 3300014310 | Natural And Restored Wetlands | MSATYFDFTTPKFFLFRNQSKRLSIPQCHILILFWCALVILYEVTGLSPTPKHSEHDSFLGCLTLTD* |
Ga0075339_12244431 | 3300014316 | Natural And Restored Wetlands | MSATYFDFTTPKFFLFRNQSKRFSIPQCHILILFWCALVILYDVTG |
Ga0075351_10487971 | 3300014318 | Natural And Restored Wetlands | MSVKYFDFTTPKFFLFRNQSKRLSIPQYHILILAWCALVILYGETGLSPPPGRSER* |
Ga0075348_10427781 | 3300014319 | Natural And Restored Wetlands | PKFLLFRNPLNLLSILQCHILILFWCALVILYDVTGLNPTP* |
Ga0075353_10847562 | 3300014321 | Natural And Restored Wetlands | MSVKYFDPTTPKFFLFRNQSKRLSIPQYHILILAWCALVILYGETGLSPAPGHSET* |
Ga0075352_10238982 | 3300014324 | Natural And Restored Wetlands | MSIKYFDPTTPKFFLFRNQSKRLSIPQYHILILAWCALVILYGETGLSPAPGHSET* |
Ga0180072_10371591 | 3300015250 | Soil | MSVKYFDFTTPKFFLFRNLSKRLSIPQYHILILAWCALVILYGEPGLIPTPGHSEQ* |
Ga0184615_106246401 | 3300018059 | Groundwater Sediment | MSVKYFDFTTPKFFLFRNQSKRLSIPQYHILILAWCALVILYGESGLSPTPEHNET |
Ga0210339_10244252 | 3300021332 | Estuarine | ATHFDFTTPKFFLFRNPSNFLSIPPCHILILFWCALVILYDVAGLNPAPEHIET |
Ga0210125_10625071 | 3300025943 | Natural And Restored Wetlands | MSATYFDFTTPKFFLFRNQSKRLSIPQCHILILFWCALVILYDVT |
Ga0210146_10152732 | 3300025963 | Natural And Restored Wetlands | MSVKYFDFTTPKFFLFRNQSKRHSIPQYHILILAWCALVILYGETGLNPTPGHSET |
Ga0210103_10449611 | 3300025968 | Natural And Restored Wetlands | MSATYFDFTTPKFFLFRNQSKRLSIPQCHILILFWCALVILYDV |
Ga0210117_10029052 | 3300025985 | Natural And Restored Wetlands | MSVKYFDFTTPKFFLFRNQSKRLSIPQYHILILAWCALVILYGETGLSPAPGHSET |
Ga0210129_10162671 | 3300026026 | Natural And Restored Wetlands | MSVTYFDFTTPKFFLFRNRTKNLSIPQYHILILAWCALVILYGETGLNPTPGHSET |
Ga0208910_10077221 | 3300026027 | Natural And Restored Wetlands | MSIKYFDFTTPQFFLFRNQSKHLSIPQYHILILAWCALVILYGEPGLSPTPKHSET |
Ga0208914_10430991 | 3300026102 | Natural And Restored Wetlands | MSVKYFDFTTPKFFLFRNQSKRLSIPQYHILILAWCALVILYGETGLSPTPGHSET |
Ga0256811_10120672 | 3300026349 | Sediment | MSVPYVDLTAPKFFLFRNQSKRFSIPQYHILILFWCALVVLYDVTGLSPPPRTQ |
Ga0256823_10213872 | 3300026350 | Sediment | MSVAHFDATTPTYFRFRNQSKHLSIPQLHISILFWCALVIL |
Ga0209285_100844781 | 3300027726 | Freshwater Sediment | MSVKYFDFTTPKFFLFRNLSKRLSIPQYHILILAWCALVILYGEPGLSSTPGHSEK |
Ga0209575_100556052 | 3300027739 | Freshwater | MSIKYFDFTTPKFFLFRNQSKRLSIPQYHILILAWCALVILYGEPGPSPTFGHSEK |
Ga0209262_103373911 | 3300027841 | Freshwater | MSIKYFDFTTPKFFLFRNQSKHLSIPQYHILILAWCALVILYGEPGPSPTFGHSEK |
Ga0209262_105214542 | 3300027841 | Freshwater | MSVKSFDFTTPKFFLFRNLSKRLSIPQYHILILAWCALVILYGEPGLISTPGHSEN |
Ga0209450_100513141 | 3300027885 | Freshwater Lake Sediment | MSIKYFDTTTPKFFLFRNQSKRLSIPQYHILILAWCALVILYGETSLSPSSEHSEK |
Ga0209450_105946951 | 3300027885 | Freshwater Lake Sediment | MSIKYFDFTTPKFFLFRNQSKRLSIPQYHILILAWCALVILYGEPGLSPTPGHSEK |
Ga0208980_100851311 | 3300027887 | Wetland | MSVKYFDFTTPKFFLFRNQSKRLSIPQYHILILAWCALVILYGEPGPSPTFGHSEK |
Ga0209668_103927762 | 3300027899 | Freshwater Lake Sediment | MSVKYFDFTTPKFFLFRNQSKRHSIPQYHILILAWCALVILYGEPGPSPTPGHSEK |
Ga0209253_104645642 | 3300027900 | Freshwater Lake Sediment | MSVKYFDFTTPKFFLFRNLSKRLSIPQYHILILAWCALVILYGEPGLIPTPGHSEK |
Ga0209391_101066772 | 3300027975 | Freshwater Sediment | MSVKYFDFTTPKFFLFRDLSKRLSIPQYHILILAWCALVILYGEPGP |
Ga0315288_105673322 | 3300031772 | Sediment | MSVKYFDFTTPKFFLFRNQSKRLSIPQYHILILAWCALVILYGEPGLIPTPGHSEK |
Ga0315297_110315572 | 3300031873 | Sediment | MSVKYFDFTTPKFFLFRNQSKLLSIPQYHILILAWCALVILYGEPGPSPTPEHSET |
Ga0315297_110791331 | 3300031873 | Sediment | MSVKYFDATTPKFFLFRNQSKRLSIPQYHILILAWCALVILYGEPGLIPTPGHSEK |
Ga0315278_102098262 | 3300031997 | Sediment | MSFNYFDFTTPKFFLFRNQSKRHSLPQYHILILAWCALVILYGETGPSPTPGHSEK |
Ga0315284_120030401 | 3300032053 | Sediment | MSVKYFDAPALKFFLFRNQSKHLSIPQYHILILAWCALVILYGEPGLSPTPGQNET |
Ga0315292_109076521 | 3300032143 | Sediment | MSVKYFDFTTPKFFLFRNQSKRLSIPQYHILILAWCALVILYGETGLNPTPGHSEK |
Ga0315283_117621361 | 3300032164 | Sediment | KYFDFTTPKFFLFRNQSKRLSIPQYHILILAWCALVILYGETGPSPTPGHSET |
Ga0315273_102276332 | 3300032516 | Sediment | MSVKYFDFTTPKFFLFRNQSKLLSIPQYHILILAWCALVILYGESGLSPTLEHSENMTAFSVAYR |
Ga0315273_107437391 | 3300032516 | Sediment | MSVKYFDFTTPKFFLFRNQSKRLSIPQYHILILAWCALVILYGEPGPSPTPGHSEK |
Ga0315273_116632332 | 3300032516 | Sediment | GGENMSVKYFDFTTPKFFLFRNQSKRLSIPQYHILILAWCALVILYGESGLSPTPEHSEK |
Ga0316603_115899772 | 3300033413 | Soil | TTPKFFLFRNQSKHLSIPHYHILILAWCALVILYGETGLSPTPGHSEK |
Ga0326726_115427031 | 3300033433 | Peat Soil | NISIPEVAIMSIKYFDFTTPKFFLFRNQSKRLSIPQYHILILAWCALVILYGESGLSPTPEHSET |
Ga0316627_1002690871 | 3300033482 | Soil | MSVKYFDATTLKFFLFRNQSKHVSIPQYHILILAWSALVILYGETDPSPTTGHSET |
Ga0316627_1014703541 | 3300033482 | Soil | MSVKYFDFTTPQFFLFRNLSKRLSIPQYHILILAWCALVILYGEPGLSSTPGHSEK |
Ga0316621_111291261 | 3300033488 | Soil | DFTTPQFFLFRNLSKRLSIPQYHILILAWCALVILYGEPGLSSTPGHSEK |
Ga0316616_1000748653 | 3300033521 | Soil | MSAKYFDFTTPKFFLFRNQSKRHSIPQYHILILAWCALVILYGEPGPSPTFGHSEK |
Ga0316617_1000194635 | 3300033557 | Soil | MFVKYFDFTTPKFFLFRNQSKHLSIPHYHILILAWCALVILYGETGLSPLPDTAKNDGFL |
Ga0316617_1019626292 | 3300033557 | Soil | VKYFDATTLKFFLFRNQSKHVSIPQYHILILAWSALVILYGETDPSPTTGHSET |
Ga0370490_0005465_3799_3969 | 3300034128 | Untreated Peat Soil | MSVKYFDFTTPKFFLFRNQSKRHSIPQYHILILAWCALVILYGETGLNPTPGHSEQ |
Ga0370480_0002232_3811_3966 | 3300034169 | Untreated Peat Soil | MSVKYFDFTTPKFFLFRNQSKRHSIPQYHILILAWCALVILYGETGLSPTP |
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