Metagenome / Metatranscriptome Family F098776

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F098776
Family Type	Metagenome / Metatranscriptome
Number of Sequences	103
Average Sequence Length	55 residues
Representative Sequence	MSVKYFDFTTPKFFLFRNQSKRLSIPQYHILILAWCALVILYGETGLSPTPGHSET
Number of Associated Samples	76
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	83.50 %
% of genes near scaffold ends (potentially truncated)	25.24 %
% of genes from short scaffolds (< 2000 bps)	85.44 %
Associated GOLD sequencing projects	69
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.32

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (93.204 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland (17.476 % of family members)
Environment Ontology (ENVO)	Unclassified (33.010 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (28.155 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 28.57% β-sheet: 0.00% Coil/Unstructured: 71.43%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.32
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.32
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF00041	fn3	52.43
PF07698	7TM-7TMR_HD	1.94
PF00801	PKD	1.94
PF00754	F5_F8_type_C	0.97
PF00072	Response_reg	0.97
PF01966	HD	0.97
PF01609	DDE_Tnp_1	0.97
PF01435	Peptidase_M48	0.97
PF02129	Peptidase_S15	0.97
PF01850	PIN	0.97
PF01252	Peptidase_A8	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG0597	Lipoprotein signal peptidase	Cell wall/membrane/envelope biogenesis [M]	1.94
COG1480	Cyclic di-AMP-specific phosphodiesterase PgpH, HD superfamily	Signal transduction mechanisms [T]	1.94
COG3039	Transposase and inactivated derivatives, IS5 family	Mobilome: prophages, transposons [X]	0.97
COG3293	Transposase	Mobilome: prophages, transposons [X]	0.97
COG3385	IS4 transposase InsG	Mobilome: prophages, transposons [X]	0.97
COG5421	Transposase	Mobilome: prophages, transposons [X]	0.97
COG5433	Predicted transposase YbfD/YdcC associated with H repeats	Mobilome: prophages, transposons [X]	0.97
COG5659	SRSO17 transposase	Mobilome: prophages, transposons [X]	0.97

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	93.20 %
Unclassified	root	N/A	6.80 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	93.20 %
Unclassified	root	N/A	6.80 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	93.20 %
Unclassified	root	N/A	6.80 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	44.66 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	41.75 %
Unclassified	root	N/A	6.80 %

Name	Rank	Taxonomy	Distribution
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	44.66 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	40.78 %
Unclassified	root	N/A	6.80 %

Name	Rank	Taxonomy	Distribution
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	44.66 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	40.78 %
Unclassified	root	N/A	6.80 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	44.66 %
Desulfobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	22.33 %
Unclassified	root	N/A	6.80 %
Desulfuromonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales	1.94 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	44.66 %
Desulfobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	22.33 %
Unclassified	root	N/A	6.80 %
Geobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae	1.94 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	44.66 %
unclassified Desulfobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae	18.45 %
Unclassified	root	N/A	6.80 %
unclassified Geobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → unclassified Geobacteraceae	1.94 %
Desulfosarcina	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfosarcina	1.94 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	44.66 %
Desulfobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	18.45 %
Unclassified	root	N/A	6.80 %
Geobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → unclassified Geobacteraceae → Geobacteraceae bacterium	1.94 %
Desulfosarcina	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfosarcina	1.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000094\|WSSedA1TDRAFT_c027250	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	680	Open in IMG/M
3300000124\|BS_KBA_SWE12_21mDRAFT_c10009778	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	3143	Open in IMG/M
3300000124\|BS_KBA_SWE12_21mDRAFT_c10052594	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1090	Open in IMG/M
3300000124\|BS_KBA_SWE12_21mDRAFT_c10067379	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	922	Open in IMG/M
3300000134\|BS_KBA_SWE07_21mDRAFT_c1037135	Not Available	534	Open in IMG/M
3300000309\|WSSedA1BaDRAFT_1043139	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	716	Open in IMG/M
3300000316\|WSSedB2CaDRAFT_1030640	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	509	Open in IMG/M
3300000894\|WSSedL1B2DRAFT_1018355	Not Available	605	Open in IMG/M
3300003432\|JGI20214J51088_10123846	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1829	Open in IMG/M
3300003432\|JGI20214J51088_10184360	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1469	Open in IMG/M
3300003432\|JGI20214J51088_10215297	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1348	Open in IMG/M
3300003432\|JGI20214J51088_10410163	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	902	Open in IMG/M
3300003432\|JGI20214J51088_10446987	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	852	Open in IMG/M
3300003432\|JGI20214J51088_10514304	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	769	Open in IMG/M
3300003432\|JGI20214J51088_10587704	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	706	Open in IMG/M
3300003432\|JGI20214J51088_10856155	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	593	Open in IMG/M
3300003541\|JGI20214J51650_10479439	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	872	Open in IMG/M
3300003541\|JGI20214J51650_10491698	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	860	Open in IMG/M
3300003541\|JGI20214J51650_10552168	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	808	Open in IMG/M
3300003541\|JGI20214J51650_10641564	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	745	Open in IMG/M
3300003541\|JGI20214J51650_11068609	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	563	Open in IMG/M
3300004009\|Ga0055437_10250162	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	580	Open in IMG/M
3300004049\|Ga0055493_10035982	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	882	Open in IMG/M
3300004051\|Ga0055492_10060174	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	780	Open in IMG/M
3300004062\|Ga0055500_10011575	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	1455	Open in IMG/M
3300004146\|Ga0055495_10166810	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	565	Open in IMG/M
3300004154\|Ga0066603_10116776	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	1175	Open in IMG/M
3300005213\|Ga0068998_10001888	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2235	Open in IMG/M
3300005218\|Ga0068996_10045365	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	839	Open in IMG/M
3300005219\|Ga0069004_10240682	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	556	Open in IMG/M
3300005830\|Ga0074473_10621047	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfosarcina	1341	Open in IMG/M
3300005831\|Ga0074471_10288475	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfosarcina	2469	Open in IMG/M
3300005831\|Ga0074471_10722215	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	1695	Open in IMG/M
3300005833\|Ga0074472_10518634	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	3164	Open in IMG/M
3300005833\|Ga0074472_10777906	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	1929	Open in IMG/M
3300006930\|Ga0079303_10066712	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	1303	Open in IMG/M
3300009009\|Ga0105105_10151764	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1167	Open in IMG/M
3300009037\|Ga0105093_10589288	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	628	Open in IMG/M
3300009075\|Ga0105090_10061109	All Organisms → cellular organisms → Bacteria	2353	Open in IMG/M
3300009075\|Ga0105090_10101674	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	1799	Open in IMG/M
3300009075\|Ga0105090_10159774	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → unclassified Geobacteraceae → Geobacteraceae bacterium	1404	Open in IMG/M
3300009075\|Ga0105090_10619128	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	657	Open in IMG/M
3300009081\|Ga0105098_10211416	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	900	Open in IMG/M
3300009085\|Ga0105103_10047637	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2160	Open in IMG/M
3300009131\|Ga0115027_10578496	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	823	Open in IMG/M
3300009131\|Ga0115027_10640800	Not Available	789	Open in IMG/M
3300009146\|Ga0105091_10685077	Not Available	536	Open in IMG/M
3300009165\|Ga0105102_10032310	All Organisms → cellular organisms → Bacteria	2205	Open in IMG/M
3300009165\|Ga0105102_10414789	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	718	Open in IMG/M
3300009179\|Ga0115028_10217281	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1223	Open in IMG/M
3300010391\|Ga0136847_10704804	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	750	Open in IMG/M
3300011408\|Ga0137460_1018675	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1089	Open in IMG/M
3300013315\|Ga0173609_10059361	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	5487	Open in IMG/M
3300014258\|Ga0075315_1005804	All Organisms → cellular organisms → Bacteria	1507	Open in IMG/M
3300014305\|Ga0075349_1025399	All Organisms → cellular organisms → Bacteria	1131	Open in IMG/M
3300014310\|Ga0075331_1091822	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	704	Open in IMG/M
3300014316\|Ga0075339_1224443	Not Available	536	Open in IMG/M
3300014318\|Ga0075351_1048797	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	779	Open in IMG/M
3300014319\|Ga0075348_1042778	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	1025	Open in IMG/M
3300014321\|Ga0075353_1084756	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	717	Open in IMG/M
3300014324\|Ga0075352_1023898	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	1300	Open in IMG/M
3300015250\|Ga0180072_1037159	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	782	Open in IMG/M
3300018059\|Ga0184615_10624640	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	558	Open in IMG/M
3300021332\|Ga0210339_1024425	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	517	Open in IMG/M
3300025943\|Ga0210125_1062507	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	596	Open in IMG/M
3300025963\|Ga0210146_1015273	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	764	Open in IMG/M
3300025968\|Ga0210103_1044961	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	735	Open in IMG/M
3300025985\|Ga0210117_1002905	All Organisms → cellular organisms → Bacteria → Proteobacteria	1916	Open in IMG/M
3300026026\|Ga0210129_1016267	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	1171	Open in IMG/M
3300026027\|Ga0208910_1007722	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	641	Open in IMG/M
3300026102\|Ga0208914_1043099	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	553	Open in IMG/M
3300026349\|Ga0256811_1012067	Not Available	809	Open in IMG/M
3300026350\|Ga0256823_1021387	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	613	Open in IMG/M
3300027726\|Ga0209285_10084478	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	960	Open in IMG/M
3300027739\|Ga0209575_10055605	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	1443	Open in IMG/M
3300027841\|Ga0209262_10337391	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	734	Open in IMG/M
3300027841\|Ga0209262_10521454	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	578	Open in IMG/M
3300027885\|Ga0209450_10051314	Not Available	2550	Open in IMG/M
3300027885\|Ga0209450_10594695	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	808	Open in IMG/M
3300027887\|Ga0208980_10085131	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	1849	Open in IMG/M
3300027899\|Ga0209668_10392776	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	907	Open in IMG/M
3300027900\|Ga0209253_10464564	All Organisms → cellular organisms → Bacteria	950	Open in IMG/M
3300027975\|Ga0209391_10106677	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	1239	Open in IMG/M
3300031772\|Ga0315288_10567332	All Organisms → cellular organisms → Bacteria	1103	Open in IMG/M
3300031873\|Ga0315297_11031557	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	679	Open in IMG/M
3300031873\|Ga0315297_11079133	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	661	Open in IMG/M
3300031997\|Ga0315278_10209826	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	2005	Open in IMG/M
3300032053\|Ga0315284_12003040	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	587	Open in IMG/M
3300032143\|Ga0315292_10907652	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	734	Open in IMG/M
3300032164\|Ga0315283_11762136	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	625	Open in IMG/M
3300032516\|Ga0315273_10227633	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → unclassified Geobacteraceae → Geobacteraceae bacterium	2544	Open in IMG/M
3300032516\|Ga0315273_10743739	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	1284	Open in IMG/M
3300032516\|Ga0315273_11663233	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	775	Open in IMG/M
3300033413\|Ga0316603_11589977	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	620	Open in IMG/M
3300033433\|Ga0326726_11542703	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	647	Open in IMG/M
3300033482\|Ga0316627_100269087	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	1374	Open in IMG/M
3300033482\|Ga0316627_101470354	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	688	Open in IMG/M
3300033488\|Ga0316621_11129126	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	589	Open in IMG/M
3300033521\|Ga0316616_100074865	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2827	Open in IMG/M
3300033557\|Ga0316617_100019463	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	3498	Open in IMG/M
3300033557\|Ga0316617_101962629	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	600	Open in IMG/M
3300034128\|Ga0370490_0005465	All Organisms → cellular organisms → Bacteria	4603	Open in IMG/M
3300034169\|Ga0370480_0002232	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	7503	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.03%
Engineered	Engineered	0.97%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	78.64%
Terrestrial	Environmental → Terrestrial	20.39%
Wastewater	Engineered → Wastewater	0.97%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	35.92%
Marine	Environmental → Aquatic → Marine	34.95%
Soil	Environmental → Terrestrial → Soil	18.45%
Sediment	Environmental → Aquatic → Sediment	7.77%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	0.97%
Peat	Environmental → Terrestrial → Peat	0.97%
Industrial Wastewater	Engineered → Wastewater → Industrial Wastewater	0.97%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Aquatic → Marine → Wetlands	33.98%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	18.45%
Sediment	Environmental → Aquatic → Freshwater → Sediment	15.53%
Lake	Environmental → Aquatic → Freshwater → Lake	10.68%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	7.77%
Lentic	Environmental → Aquatic → Freshwater → Lentic	3.88%
Pond	Environmental → Aquatic → Freshwater → Pond	3.88%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.94%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	0.97%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	0.97%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.97%
Mine Water	Engineered → Wastewater → Industrial Wastewater → Mine Water	0.97%

Habitat	Taxonomy	Distribution
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	21.36%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	18.45%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	15.53%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	12.62%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	10.68%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	7.77%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	3.88%
Sediment	Environmental → Aquatic → Freshwater → Pond → Sediment	3.88%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.94%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	0.97%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	0.97%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.97%
Unclassified	Engineered → Wastewater → Industrial Wastewater → Mine Water → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	17.48%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	12.62%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	12.62%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	9.71%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	9.71%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	6.80%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	4.85%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	3.88%
Freshwater	Environmental → Aquatic → Freshwater → Pond → Sediment → Freshwater	3.88%
Marine	Environmental → Aquatic → Marine → Wetlands → Sediment → Marine	3.88%
Wetland	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland	2.91%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Sediment	1.94%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	1.94%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	1.94%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Sediment	0.97%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	0.97%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.97%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface	0.97%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.97%
Sediment	Engineered → Wastewater → Industrial Wastewater → Mine Water → Unclassified → Sediment	0.97%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000094	Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site A1 Tule	Environmental	Open in IMG/M
3300000124	Marine microbial communities from chronically polluted sediments in the Baltic Sea - site KBA sample SWE 12_21m	Environmental	Open in IMG/M
3300000134	Marine microbial communities from chronically polluted sediments in the Baltic Sea - site KBA sample SWE 07_21m	Environmental	Open in IMG/M
3300000309	Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site A1 Bulk	Environmental	Open in IMG/M
3300000316	Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface Sediment Feb2011 Site B2 Cattail	Environmental	Open in IMG/M
3300000894	Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site L1 Bulk	Environmental	Open in IMG/M
3300003432	Wetland sediment microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site B2 Bulk	Environmental	Open in IMG/M
3300003541	Wetland sediment microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site B2 Bulk	Environmental	Open in IMG/M
3300004009	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqC_D2	Environmental	Open in IMG/M
3300004049	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_CattailNLC_D2	Environmental	Open in IMG/M
3300004051	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_CattailNLB_D2	Environmental	Open in IMG/M
3300004062	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqA_D2	Environmental	Open in IMG/M
3300004146	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_TuleB_D2	Environmental	Open in IMG/M
3300004154	Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - High cellulose week 8	Environmental	Open in IMG/M
3300005213	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleB_D2	Environmental	Open in IMG/M
3300005218	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqC_D2	Environmental	Open in IMG/M
3300005219	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_CattailB_D2	Environmental	Open in IMG/M
3300005830	Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.178_YBM	Environmental	Open in IMG/M
3300005831	Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.43_YBM	Environmental	Open in IMG/M
3300005833	Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.174_CBK	Environmental	Open in IMG/M
3300006930	Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Methanogen_OWC	Environmental	Open in IMG/M
3300009009	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 1-3cm September2015	Environmental	Open in IMG/M
3300009037	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 1-3cm March2015	Environmental	Open in IMG/M
3300009075	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm March2015	Environmental	Open in IMG/M
3300009081	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015	Environmental	Open in IMG/M
3300009085	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 10-12cm September2015	Environmental	Open in IMG/M
3300009131	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Open_0915_D1	Environmental	Open in IMG/M
3300009146	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm March2015	Environmental	Open in IMG/M
3300009165	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 1-3cm September2015	Environmental	Open in IMG/M
3300009179	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_0915_D1	Environmental	Open in IMG/M
3300010391	Freshwater sediment microbial communities from Lake Superior, USA - Station SU-17. Combined Assembly of Gp0155404, Gp0155335, Gp0155336, Gp0155336, Gp0155403, Gp0155406	Environmental	Open in IMG/M
3300011408	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT723_2	Environmental	Open in IMG/M
3300013315	Sediment microbial communities from Acid Mine Drainage holding pond in Pittsburgh, PA, USA - 1B	Engineered	Open in IMG/M
3300014258	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_TuleA_D1	Environmental	Open in IMG/M
3300014305	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_TuleB_D1	Environmental	Open in IMG/M
3300014310	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_TuleA_D1	Environmental	Open in IMG/M
3300014316	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushMan_CattailNLC_D1	Environmental	Open in IMG/M
3300014318	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqA_D1_rd	Environmental	Open in IMG/M
3300014319	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_TuleA_D1	Environmental	Open in IMG/M
3300014321	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleB_D1	Environmental	Open in IMG/M
3300014324	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleA_D1	Environmental	Open in IMG/M
3300015250	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT293B_16_10D	Environmental	Open in IMG/M
3300018059	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_coex	Environmental	Open in IMG/M
3300021332	Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Oregon, United States ? S.384 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300025943	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushMan_CattailNLA_D2 (SPAdes)	Environmental	Open in IMG/M
3300025963	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_TuleA_D2 (SPAdes)	Environmental	Open in IMG/M
3300025968	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_CattailNLA_D2 (SPAdes)	Environmental	Open in IMG/M
3300025985	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqC_D2 (SPAdes)	Environmental	Open in IMG/M
3300026026	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_CattailB_D2 (SPAdes)	Environmental	Open in IMG/M
3300026027	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_TuleA_D1 (SPAdes)	Environmental	Open in IMG/M
3300026102	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleA_D1 (SPAdes)	Environmental	Open in IMG/M
3300026349	Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 10-16 PU6	Environmental	Open in IMG/M
3300026350	Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 7-17 PU6	Environmental	Open in IMG/M
3300027726	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 1-3cm March2015 (SPAdes)	Environmental	Open in IMG/M
3300027739	Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - Medium cellulose week 11 (SPAdes)	Environmental	Open in IMG/M
3300027841	Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - Low cellulose week 11 (SPAdes)	Environmental	Open in IMG/M
3300027885	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - LWP11 LW (SPAdes)	Environmental	Open in IMG/M
3300027887	Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site A1 Bulk	Environmental	Open in IMG/M
3300027899	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - PLP11 PL (SPAdes)	Environmental	Open in IMG/M
3300027900	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - BRP12 BR (SPAdes)	Environmental	Open in IMG/M
3300027975	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm March2015 (SPAdes)	Environmental	Open in IMG/M
3300031772	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_20	Environmental	Open in IMG/M
3300031873	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G15_0	Environmental	Open in IMG/M
3300031997	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_0	Environmental	Open in IMG/M
3300032053	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_16	Environmental	Open in IMG/M
3300032143	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_0	Environmental	Open in IMG/M
3300032164	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_0	Environmental	Open in IMG/M
3300032516	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_0	Environmental	Open in IMG/M
3300033413	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day10_noCT	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300033482	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D1_C	Environmental	Open in IMG/M
3300033488	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_OW2_C1_D1_C	Environmental	Open in IMG/M
3300033521	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D1_B	Environmental	Open in IMG/M
3300033557	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D2_B	Environmental	Open in IMG/M
3300034128	Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_06D_16	Environmental	Open in IMG/M
3300034169	Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_02D_15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
WSSedA1TDRAFT_0272501	3300000094	Wetland	MSVKYFDFTTPKFFLFRNQSKRLSIPQYHILILAWCALVILYGEPGPSPTFGHSEK*
BS_KBA_SWE12_21mDRAFT_100097781	3300000124	Marine	MSATYFDFTTPKFFLFRNQSKRLSIPQCHILILFWCALVILYDVTGLSSAPKHSET*
BS_KBA_SWE12_21mDRAFT_100525942	3300000124	Marine	MSATHFDFTTLKFFLFRNQSNRLSIPPCHILILFWCALVILYDVTGLSPAP*
BS_KBA_SWE12_21mDRAFT_100673791	3300000124	Marine	MSIKYFDFTTPQFFLFRNQSKRISIPQYLILFLFWCALVILYDVAGLSPAPEHSET*
BS_KBA_SWE07_21mDRAFT_10371352	3300000134	Marine	MSATHFDFTTLKFFLFRNQSNRLSIPPCHILILFWCALVILYDVTGLS
WSSedA1BaDRAFT_10431391	3300000309	Wetland	MSVTYFDFTTPKFFLFRNQAKHLSIPHYHILILAWCALVILYGETGLSPTPGHGEK*
WSSedB2CaDRAFT_10306401	3300000316	Wetland	MSAKYFDFTTPKFFLFRNQSKRLSIPQYHILILAWCALVILYGEPGLIPTPGHSEK*
WSSedL1B2DRAFT_10183553	3300000894	Wetland	MSVKYFDFTTPKFFLFRNQSKRLSIPQYHILILAWCALVI
JGI20214J51088_101238461	3300003432	Wetland	MSVKYFDAATPKFFLFRNQSKRLSIPQYHILILAWCALVILYGES
JGI20214J51088_101843602	3300003432	Wetland	MSIKYFDFTTPKFFLFRNQSKRLSIPQYHILILAWCALVILYGEPGPSPTPGHSEK*
JGI20214J51088_102152971	3300003432	Wetland	MSVKYFDFTTPKFFLFRNQSKRLSIPQYHILILAWCALVILYGEPGPIPTPGHSEK*
JGI20214J51088_104101631	3300003432	Wetland	MSVKYFDAATPKFFLFRNQSKRLSIPQYHILILAWCALVILYGESGPRPTPEHSET*
JGI20214J51088_104469871	3300003432	Wetland	MYVKHFDFTTPKFFLFRNQSKRHSIPQYPILILAWCARVILYGETGPSPTPGHCET*
JGI20214J51088_105143042	3300003432	Wetland	MSIKYFDFTTPKFFLFRNQSKRLSIPQYHILILAWCARVILYGESVLSPAPEHSET*
JGI20214J51088_105877042	3300003432	Wetland	MSVKYFDFTTPKFFLFRNQSKRLSIPQYHILILAWCALVILYGEPGPSPTPGHSEK*
JGI20214J51088_108561552	3300003432	Wetland	DFTTPKFFLFRNQSKRHSIPQYHILILAWCALVILYGETGLNPTPGHSET*
JGI20214J51650_104794391	3300003541	Wetland	MYVKHFDFTTPKFFLFRNQSKRHSIPQYPILILAWCARVIL
JGI20214J51650_104916981	3300003541	Wetland	FMSIKYFDFTTPKFFLFRNQSKRLSIPQYHILILAWCARVILYGESVLSPAPEHSET*
JGI20214J51650_105521682	3300003541	Wetland	MSIKYFDFTTPKFFLFRNQSKRLXIPQYHILILAWCALVILYGEPGPSPTPGHSEK*
JGI20214J51650_106415642	3300003541	Wetland	MSVKXFDFTTPKFFLFRNQSKRLSIPQYHILILAWCALVILYGEPGPSPTPEHSET*
JGI20214J51650_110686091	3300003541	Wetland	MSVKYFDFTTPKFFLFRNQSKRHSIPQYHILILAWCALVILYGEPGLNPTPGHSET*
Ga0055437_102501621	3300004009	Natural And Restored Wetlands	ISIPEVARMSIKYFDFTTPKFFLFRNQSKRHSIPQYHILIFAWCALVILYGEPGPSPTPGHSER*
Ga0055493_100359822	3300004049	Natural And Restored Wetlands	MSATYFDFTTPKFFLFRNQSKRLSIPQCHILILFWCALVILYDVTGLSPTPKHSET*
Ga0055492_100601741	3300004051	Natural And Restored Wetlands	MSATYLDFTTPKFFLFRNQSKRLSIPQCHILILFWCALVILYDVTGLSPAPKHSET*
Ga0055500_100115751	3300004062	Natural And Restored Wetlands	MSVKYFDFTTPKFFLFRNQSKRLSIPQYHILILAWCTLVILYGETGLSPAPGHSQT*
Ga0055495_101668102	3300004146	Natural And Restored Wetlands	MSIKYFDFITPQFFLFRNQSKRLSIPQSHILILFWCALVILYDVAGLSPAPEHSET*
Ga0066603_101167762	3300004154	Freshwater	FDFTTPKFFLFRNQSKRLSIPQYHILILAWCALVILYGEPGLSPTPGHSEK*
Ga0068998_100018881	3300005213	Natural And Restored Wetlands	MSVKYFDPTTPKFFLFRNQSKHLSIPQYHILILAWCALVILYGETGLSPTPGHSET*
Ga0068996_100453652	3300005218	Natural And Restored Wetlands	MSVKYFDFTTPKFFLFRNQSKRLSIPQYHILILAWCALVILYGETGLSPAPGHSET*
Ga0069004_102406821	3300005219	Natural And Restored Wetlands	MSVKYFDFTTPKFFLFRNQSKRHSIPQYHILILAWCALVILYGETGLNPTPGHSET*
Ga0074473_106210473	3300005830	Sediment (Intertidal)	MSATYFDFTTPKFFLFKNRSNRLSIPPCHILILFWCALVILYDVTGLNPTP*
Ga0074471_102884751	3300005831	Sediment (Intertidal)	MSATHFDFTTPKFFLFRNPLNLLSIPQCHILILFWCALVILYDVT
Ga0074471_107222152	3300005831	Sediment (Intertidal)	MSIKYFDFTTPQFFLFRNQSKRLSIPQCHILILFWCALVILYDVTGLSSAPKHSET*
Ga0074472_105186343	3300005833	Sediment (Intertidal)	MSIKYFDFTTPKFFLFRNQSRRLSIPQYHILILAWCALVILYGETGLSSTPGHSET*
Ga0074472_107779064	3300005833	Sediment (Intertidal)	MSVKYFDFTTPKFFLYRNRSKLLSIPQYHILILAWCALVILYGETGPSPTPG
Ga0079303_100667121	3300006930	Deep Subsurface	GVESMSVKYFDATTLKFFLFRNQSKHVSIPQYHILILAWSALVILYGETDPSPTTGHSET
Ga0105105_101517642	3300009009	Freshwater Sediment	MSVKYFDFTTPKFFLFRNLSKRLSIPQYHILILAWCALVILYGEPGLSSTPGHSEK*
Ga0105093_105892881	3300009037	Freshwater Sediment	MSVKYFDFTTPKFFLFRTLSKRLSIPQYHILILAWCALVILYGEPGLSSTPGHSEK*
Ga0105090_100611092	3300009075	Freshwater Sediment	MSVKYFDFTTPKFFLFRDLSKRLSIPQYHILILAWCALVILYGEPGP*
Ga0105090_101016742	3300009075	Freshwater Sediment	YFDFTTPKFFLFRNQSKRLSIPQYHILILAWCALVILYGEPGPSPTFGHSEK*
Ga0105090_101597741	3300009075	Freshwater Sediment	MSVKYFDFTTPKFFLFRNQSKLLSIPQYHILILAWCALVILYGESGLSPTLEHSET*
Ga0105090_106191281	3300009075	Freshwater Sediment	MSIKYFDFTTPKFFLFRNQSKRLSIPQYHILILAWCALVILYGEPGLSSTPGHSEK*
Ga0105098_102114161	3300009081	Freshwater Sediment	IKYFDFTTPKFFLFRNQSKRLSIPQYHILILAWCALVILYGEPGPSPTFGHSEK*
Ga0105103_100476372	3300009085	Freshwater Sediment	MSVKYFDFTTPKFFLFRNQSKRHSIPQYHILILAWCALVILYGETGLNPTPGHSEQ*
Ga0115027_105784961	3300009131	Wetland	MSVKYFDFTTPKFFLFRNLSKRLSIPQYHILILAWCALVILYGELGLSSTPGHSEK*
Ga0115027_106408001	3300009131	Wetland	MSAKYFDFTTPKFFLFRNQSKRHSIPQYHILILAWCALVILYGGTGLN*
Ga0105091_106850771	3300009146	Freshwater Sediment	MSVKYFDFTTPKFFLFRNLSKRLSIPQNHILILAWCALVILYGEPGLSSTPGHSEK*
Ga0105102_100323102	3300009165	Freshwater Sediment	MSIKYFDFTTPKFFLFRNQSKHLSIPQYHILILAWCALVILYGEPGPSPTFGHSEK*
Ga0105102_104147891	3300009165	Freshwater Sediment	MSVKYFDFTTPKFFLFRNQSKRHSIPQYHILILAWCALVILYGESGLSPTLEHSET*
Ga0115028_102172811	3300009179	Wetland	MSAKYFDFTTPKFFLFRNQSKRHSIPQYHILILAWCALVTLYGETGLN*
Ga0136847_107048041	3300010391	Freshwater Sediment	GLSSTNSIPEVERMSVKYFDFTTPKFFLFRNQSKRLSIPQYHILILAWCALVILYGESGLSPTPEHSET*
Ga0137460_10186751	3300011408	Soil	MSVKYFDFTTPKFFLFRNLSKRLSIPQYHILSLAWCALVILYGEPGLIPTPGHSEQ*
Ga0173609_100593616	3300013315	Sediment	MSIKYFDFTTPQFFLFRNQSKRISIPHYHILILFWCALVILYDVTGLSPTPKHSET*
Ga0075315_10058043	3300014258	Natural And Restored Wetlands	MSIKYFDFTTPQFFLFRNQSKHLSIPQYHILILAWCALVILYGEPGLSPTPKHSET*
Ga0075349_10253992	3300014305	Natural And Restored Wetlands	MSATYLDFTTPKFFLFRNQSKRLSIPQCHILILFWCALVILYDVTGLSSAPKHSET*
Ga0075331_10918221	3300014310	Natural And Restored Wetlands	MSATYFDFTTPKFFLFRNQSKRLSIPQCHILILFWCALVILYEVTGLSPTPKHSEHDSFLGCLTLTD*
Ga0075339_12244431	3300014316	Natural And Restored Wetlands	MSATYFDFTTPKFFLFRNQSKRFSIPQCHILILFWCALVILYDVTG
Ga0075351_10487971	3300014318	Natural And Restored Wetlands	MSVKYFDFTTPKFFLFRNQSKRLSIPQYHILILAWCALVILYGETGLSPPPGRSER*
Ga0075348_10427781	3300014319	Natural And Restored Wetlands	PKFLLFRNPLNLLSILQCHILILFWCALVILYDVTGLNPTP*
Ga0075353_10847562	3300014321	Natural And Restored Wetlands	MSVKYFDPTTPKFFLFRNQSKRLSIPQYHILILAWCALVILYGETGLSPAPGHSET*
Ga0075352_10238982	3300014324	Natural And Restored Wetlands	MSIKYFDPTTPKFFLFRNQSKRLSIPQYHILILAWCALVILYGETGLSPAPGHSET*
Ga0180072_10371591	3300015250	Soil	MSVKYFDFTTPKFFLFRNLSKRLSIPQYHILILAWCALVILYGEPGLIPTPGHSEQ*
Ga0184615_106246401	3300018059	Groundwater Sediment	MSVKYFDFTTPKFFLFRNQSKRLSIPQYHILILAWCALVILYGESGLSPTPEHNET
Ga0210339_10244252	3300021332	Estuarine	ATHFDFTTPKFFLFRNPSNFLSIPPCHILILFWCALVILYDVAGLNPAPEHIET
Ga0210125_10625071	3300025943	Natural And Restored Wetlands	MSATYFDFTTPKFFLFRNQSKRLSIPQCHILILFWCALVILYDVT
Ga0210146_10152732	3300025963	Natural And Restored Wetlands	MSVKYFDFTTPKFFLFRNQSKRHSIPQYHILILAWCALVILYGETGLNPTPGHSET
Ga0210103_10449611	3300025968	Natural And Restored Wetlands	MSATYFDFTTPKFFLFRNQSKRLSIPQCHILILFWCALVILYDV
Ga0210117_10029052	3300025985	Natural And Restored Wetlands	MSVKYFDFTTPKFFLFRNQSKRLSIPQYHILILAWCALVILYGETGLSPAPGHSET
Ga0210129_10162671	3300026026	Natural And Restored Wetlands	MSVTYFDFTTPKFFLFRNRTKNLSIPQYHILILAWCALVILYGETGLNPTPGHSET
Ga0208910_10077221	3300026027	Natural And Restored Wetlands	MSIKYFDFTTPQFFLFRNQSKHLSIPQYHILILAWCALVILYGEPGLSPTPKHSET
Ga0208914_10430991	3300026102	Natural And Restored Wetlands	MSVKYFDFTTPKFFLFRNQSKRLSIPQYHILILAWCALVILYGETGLSPTPGHSET
Ga0256811_10120672	3300026349	Sediment	MSVPYVDLTAPKFFLFRNQSKRFSIPQYHILILFWCALVVLYDVTGLSPPPRTQ
Ga0256823_10213872	3300026350	Sediment	MSVAHFDATTPTYFRFRNQSKHLSIPQLHISILFWCALVIL
Ga0209285_100844781	3300027726	Freshwater Sediment	MSVKYFDFTTPKFFLFRNLSKRLSIPQYHILILAWCALVILYGEPGLSSTPGHSEK
Ga0209575_100556052	3300027739	Freshwater	MSIKYFDFTTPKFFLFRNQSKRLSIPQYHILILAWCALVILYGEPGPSPTFGHSEK
Ga0209262_103373911	3300027841	Freshwater	MSIKYFDFTTPKFFLFRNQSKHLSIPQYHILILAWCALVILYGEPGPSPTFGHSEK
Ga0209262_105214542	3300027841	Freshwater	MSVKSFDFTTPKFFLFRNLSKRLSIPQYHILILAWCALVILYGEPGLISTPGHSEN
Ga0209450_100513141	3300027885	Freshwater Lake Sediment	MSIKYFDTTTPKFFLFRNQSKRLSIPQYHILILAWCALVILYGETSLSPSSEHSEK
Ga0209450_105946951	3300027885	Freshwater Lake Sediment	MSIKYFDFTTPKFFLFRNQSKRLSIPQYHILILAWCALVILYGEPGLSPTPGHSEK
Ga0208980_100851311	3300027887	Wetland	MSVKYFDFTTPKFFLFRNQSKRLSIPQYHILILAWCALVILYGEPGPSPTFGHSEK
Ga0209668_103927762	3300027899	Freshwater Lake Sediment	MSVKYFDFTTPKFFLFRNQSKRHSIPQYHILILAWCALVILYGEPGPSPTPGHSEK
Ga0209253_104645642	3300027900	Freshwater Lake Sediment	MSVKYFDFTTPKFFLFRNLSKRLSIPQYHILILAWCALVILYGEPGLIPTPGHSEK
Ga0209391_101066772	3300027975	Freshwater Sediment	MSVKYFDFTTPKFFLFRDLSKRLSIPQYHILILAWCALVILYGEPGP
Ga0315288_105673322	3300031772	Sediment	MSVKYFDFTTPKFFLFRNQSKRLSIPQYHILILAWCALVILYGEPGLIPTPGHSEK
Ga0315297_110315572	3300031873	Sediment	MSVKYFDFTTPKFFLFRNQSKLLSIPQYHILILAWCALVILYGEPGPSPTPEHSET
Ga0315297_110791331	3300031873	Sediment	MSVKYFDATTPKFFLFRNQSKRLSIPQYHILILAWCALVILYGEPGLIPTPGHSEK
Ga0315278_102098262	3300031997	Sediment	MSFNYFDFTTPKFFLFRNQSKRHSLPQYHILILAWCALVILYGETGPSPTPGHSEK
Ga0315284_120030401	3300032053	Sediment	MSVKYFDAPALKFFLFRNQSKHLSIPQYHILILAWCALVILYGEPGLSPTPGQNET
Ga0315292_109076521	3300032143	Sediment	MSVKYFDFTTPKFFLFRNQSKRLSIPQYHILILAWCALVILYGETGLNPTPGHSEK
Ga0315283_117621361	3300032164	Sediment	KYFDFTTPKFFLFRNQSKRLSIPQYHILILAWCALVILYGETGPSPTPGHSET
Ga0315273_102276332	3300032516	Sediment	MSVKYFDFTTPKFFLFRNQSKLLSIPQYHILILAWCALVILYGESGLSPTLEHSENMTAFSVAYR
Ga0315273_107437391	3300032516	Sediment	MSVKYFDFTTPKFFLFRNQSKRLSIPQYHILILAWCALVILYGEPGPSPTPGHSEK
Ga0315273_116632332	3300032516	Sediment	GGENMSVKYFDFTTPKFFLFRNQSKRLSIPQYHILILAWCALVILYGESGLSPTPEHSEK
Ga0316603_115899772	3300033413	Soil	TTPKFFLFRNQSKHLSIPHYHILILAWCALVILYGETGLSPTPGHSEK
Ga0326726_115427031	3300033433	Peat Soil	NISIPEVAIMSIKYFDFTTPKFFLFRNQSKRLSIPQYHILILAWCALVILYGESGLSPTPEHSET
Ga0316627_1002690871	3300033482	Soil	MSVKYFDATTLKFFLFRNQSKHVSIPQYHILILAWSALVILYGETDPSPTTGHSET
Ga0316627_1014703541	3300033482	Soil	MSVKYFDFTTPQFFLFRNLSKRLSIPQYHILILAWCALVILYGEPGLSSTPGHSEK
Ga0316621_111291261	3300033488	Soil	DFTTPQFFLFRNLSKRLSIPQYHILILAWCALVILYGEPGLSSTPGHSEK
Ga0316616_1000748653	3300033521	Soil	MSAKYFDFTTPKFFLFRNQSKRHSIPQYHILILAWCALVILYGEPGPSPTFGHSEK
Ga0316617_1000194635	3300033557	Soil	MFVKYFDFTTPKFFLFRNQSKHLSIPHYHILILAWCALVILYGETGLSPLPDTAKNDGFL
Ga0316617_1019626292	3300033557	Soil	VKYFDATTLKFFLFRNQSKHVSIPQYHILILAWSALVILYGETDPSPTTGHSET
Ga0370490_0005465_3799_3969	3300034128	Untreated Peat Soil	MSVKYFDFTTPKFFLFRNQSKRHSIPQYHILILAWCALVILYGETGLNPTPGHSEQ
Ga0370480_0002232_3811_3966	3300034169	Untreated Peat Soil	MSVKYFDFTTPKFFLFRNQSKRHSIPQYHILILAWCALVILYGETGLSPTP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F098776

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences