NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F103815

Metagenome Family F103815

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F103815
Family Type Metagenome
Number of Sequences 101
Average Sequence Length 65 residues
Representative Sequence LTRVKVLKDAFGQILPAELHTAQQLWKELRRGVGSAEDMLRFLARHCKRSLLGDYACLRPAP
Number of Associated Samples 85
Number of Associated Scaffolds 101

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 3.30 %
% of genes near scaffold ends (potentially truncated) 87.13 %
% of genes from short scaffolds (< 2000 bps) 81.19 %
Associated GOLD sequencing projects 80
AlphaFold2 3D model prediction Yes
3D model pTM-score0.43

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (93.069 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil
(12.871 % of family members)
Environment Ontology (ENVO) Unclassified
(21.782 % of family members)
Earth Microbiome Project Ontology (EMPO) Unclassified
(28.713 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 45.56%    β-sheet: 0.00%    Coil/Unstructured: 54.44%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.43
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 101 Family Scaffolds
PF09299Mu-transpos_C 11.88
PF00665rve 9.90
PF13565HTH_32 4.95
PF13401AAA_22 2.97
PF13408Zn_ribbon_recom 0.99
PF13551HTH_29 0.99
PF03401TctC 0.99

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 101 Family Scaffolds
COG2801Transposase InsO and inactivated derivativesMobilome: prophages, transposons [X] 9.90
COG2826Transposase and inactivated derivatives, IS30 familyMobilome: prophages, transposons [X] 9.90
COG3316Transposase (or an inactivated derivative), DDE domainMobilome: prophages, transposons [X] 9.90
COG4584TransposaseMobilome: prophages, transposons [X] 9.90
COG3181Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctCEnergy production and conversion [C] 0.99


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A93.07 %
All OrganismsrootAll Organisms6.93 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000316|WSSedB2CaDRAFT_1001908Not Available1669Open in IMG/M
3300000956|JGI10216J12902_103563950Not Available706Open in IMG/M
3300001213|JGIcombinedJ13530_102776375All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium549Open in IMG/M
3300001213|JGIcombinedJ13530_107624699All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium536Open in IMG/M
3300001279|JGI20214J14112_1003170All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium2792Open in IMG/M
3300003432|JGI20214J51088_10818605Not Available605Open in IMG/M
3300004066|Ga0055484_10001502Not Available2987Open in IMG/M
3300004066|Ga0055484_10076900Not Available786Open in IMG/M
3300004778|Ga0062383_10035840Not Available1873Open in IMG/M
3300005561|Ga0066699_10362798Not Available1036Open in IMG/M
3300006172|Ga0075018_10689499Not Available551Open in IMG/M
3300009037|Ga0105093_10700508Not Available581Open in IMG/M
3300009091|Ga0102851_11419677Not Available771Open in IMG/M
3300009131|Ga0115027_11016735Not Available650Open in IMG/M
3300009131|Ga0115027_11911450Not Available500Open in IMG/M
3300009167|Ga0113563_13113427Not Available562Open in IMG/M
3300009634|Ga0116124_1138951Not Available680Open in IMG/M
3300009641|Ga0116120_1140832Not Available780Open in IMG/M
3300009641|Ga0116120_1231219Not Available582Open in IMG/M
3300009646|Ga0116132_1116042Not Available820Open in IMG/M
3300009839|Ga0116223_10822798Not Available531Open in IMG/M
3300010323|Ga0134086_10230285Not Available700Open in IMG/M
3300010392|Ga0118731_100438746Not Available1361Open in IMG/M
3300011400|Ga0137312_1014463Not Available1046Open in IMG/M
3300012206|Ga0137380_10588715Not Available974Open in IMG/M
3300012361|Ga0137360_10717617Not Available859Open in IMG/M
3300012363|Ga0137390_11403825Not Available642Open in IMG/M
3300012684|Ga0136614_10547229Not Available830Open in IMG/M
3300012931|Ga0153915_10209642Not Available2142Open in IMG/M
3300012976|Ga0134076_10203103Not Available831Open in IMG/M
3300014303|Ga0075358_1147137Not Available508Open in IMG/M
3300014321|Ga0075353_1241038Not Available501Open in IMG/M
3300014492|Ga0182013_10060985Not Available2777Open in IMG/M
3300014498|Ga0182019_10793516Not Available677Open in IMG/M
3300015358|Ga0134089_10539951Not Available515Open in IMG/M
3300017659|Ga0134083_10392942Not Available604Open in IMG/M
3300017822|Ga0187802_10354166Not Available577Open in IMG/M
3300017929|Ga0187849_1376083Not Available522Open in IMG/M
3300017935|Ga0187848_10009213All Organisms → cellular organisms → Bacteria → Proteobacteria5894Open in IMG/M
3300017998|Ga0187870_1258764Not Available594Open in IMG/M
3300018009|Ga0187884_10220162Not Available778Open in IMG/M
3300018035|Ga0187875_10173734Not Available1197Open in IMG/M
3300018035|Ga0187875_10686560Not Available538Open in IMG/M
3300018044|Ga0187890_10350770Not Available827Open in IMG/M
3300018047|Ga0187859_10518038Not Available665Open in IMG/M
3300018052|Ga0184638_1257079Not Available600Open in IMG/M
3300018062|Ga0187784_10788333Not Available759Open in IMG/M
3300024056|Ga0124853_1119142Not Available749Open in IMG/M
3300025324|Ga0209640_10788518Not Available749Open in IMG/M
3300025482|Ga0208715_1047497Not Available786Open in IMG/M
3300025966|Ga0210105_1005517Not Available1817Open in IMG/M
3300025967|Ga0210136_1022427Not Available825Open in IMG/M
3300026463|Ga0256815_1005672Not Available1108Open in IMG/M
3300026550|Ga0209474_10697357Not Available526Open in IMG/M
3300027831|Ga0209797_10010068Not Available4429Open in IMG/M
3300027841|Ga0209262_10407752Not Available662Open in IMG/M
3300027902|Ga0209048_10563387Not Available763Open in IMG/M
3300028577|Ga0265318_10079298Not Available1213Open in IMG/M
3300028652|Ga0302166_10090886Not Available674Open in IMG/M
3300029987|Ga0311334_11275280Not Available618Open in IMG/M
3300030003|Ga0302172_10159781Not Available702Open in IMG/M
3300030706|Ga0310039_10228389Not Available724Open in IMG/M
3300031546|Ga0318538_10071616Not Available1743Open in IMG/M
3300031679|Ga0318561_10654967Not Available578Open in IMG/M
3300031726|Ga0302321_100176980Not Available2213Open in IMG/M
3300031726|Ga0302321_102255024Not Available634Open in IMG/M
3300031873|Ga0315297_10148527All Organisms → cellular organisms → Bacteria1903Open in IMG/M
3300031952|Ga0315294_11004962Not Available695Open in IMG/M
3300031954|Ga0306926_10118416Not Available3262Open in IMG/M
3300032044|Ga0318558_10160448Not Available1086Open in IMG/M
3300032160|Ga0311301_10553650Not Available1680Open in IMG/M
3300032160|Ga0311301_11033892Not Available1080Open in IMG/M
3300032160|Ga0311301_11898280Not Available702Open in IMG/M
3300032173|Ga0315268_10437456Not Available1284Open in IMG/M
3300032173|Ga0315268_10846202Not Available917Open in IMG/M
3300032256|Ga0315271_10666345Not Available892Open in IMG/M
3300032256|Ga0315271_11636147All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium554Open in IMG/M
3300032783|Ga0335079_10360974All Organisms → cellular organisms → Bacteria → Proteobacteria1574Open in IMG/M
3300032892|Ga0335081_12734390Not Available502Open in IMG/M
3300032897|Ga0335071_11165423Not Available716Open in IMG/M
3300033158|Ga0335077_11087590Not Available791Open in IMG/M
3300033402|Ga0326728_10207793Not Available1955Open in IMG/M
3300033402|Ga0326728_10425018Not Available1120Open in IMG/M
3300033418|Ga0316625_101862748Not Available586Open in IMG/M
3300033483|Ga0316629_10789006Not Available728Open in IMG/M
3300033485|Ga0316626_10069723Not Available2471Open in IMG/M
3300033487|Ga0316630_11445660Not Available618Open in IMG/M
3300033487|Ga0316630_11696984Not Available574Open in IMG/M
3300033488|Ga0316621_10873612Not Available662Open in IMG/M
3300033521|Ga0316616_104533747Not Available523Open in IMG/M
3300033557|Ga0316617_100932942Not Available843Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil12.87%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland9.90%
SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Sediment6.93%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil5.94%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland4.95%
WetlandEnvironmental → Aquatic → Marine → Wetlands → Sediment → Wetland4.95%
FenEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Fen4.95%
Freshwater WetlandsEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands3.96%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil3.96%
Wetland SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment2.97%
Natural And Restored WetlandsEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands2.97%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil2.97%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil2.97%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil2.97%
Natural And Restored WetlandsEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands2.97%
WetlandEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland1.98%
Peat SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil1.98%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment0.99%
Freshwater Lake SedimentEnvironmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment0.99%
Freshwater WetlandsEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands0.99%
SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Sediment0.99%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment0.99%
Polar Desert SandEnvironmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand0.99%
FreshwaterEnvironmental → Aquatic → Freshwater → Pond → Sediment → Freshwater0.99%
MarineEnvironmental → Aquatic → Marine → Coastal → Sediment → Marine0.99%
SoilEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Soil0.99%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment0.99%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds0.99%
Arctic Peat SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil0.99%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil0.99%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil0.99%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland0.99%
FenEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Fen0.99%
BogEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Bog0.99%
SoilEnvironmental → Terrestrial → Soil → Loam → Unclassified → Soil0.99%
BogEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Bog0.99%
RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere0.99%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000316Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface Sediment Feb2011 Site B2 CattailEnvironmentalOpen in IMG/M
3300000956Soil microbial communities from Great Prairies - Kansas, Native Prairie soilEnvironmentalOpen in IMG/M
3300001213Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)EnvironmentalOpen in IMG/M
3300001279Wetland sediment microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site B2 BulkEnvironmentalOpen in IMG/M
3300003432Wetland sediment microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site B2 BulkEnvironmentalOpen in IMG/M
3300004066Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushMan_CattailNLC_D2EnvironmentalOpen in IMG/M
3300004778Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare3FreshEnvironmentalOpen in IMG/M
3300005561Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148EnvironmentalOpen in IMG/M
3300006172Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014EnvironmentalOpen in IMG/M
3300009037Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 1-3cm March2015EnvironmentalOpen in IMG/M
3300009091Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300009131Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Open_0915_D1EnvironmentalOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300009167Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG - Illumina Assembly (version 2)EnvironmentalOpen in IMG/M
3300009634Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_150EnvironmentalOpen in IMG/M
3300009641Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_150EnvironmentalOpen in IMG/M
3300009646Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_150EnvironmentalOpen in IMG/M
3300009839Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaGEnvironmentalOpen in IMG/M
3300010323Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300010379Sb_50d combined assemblyEnvironmentalOpen in IMG/M
3300010392Coastal sediment microbial communities from Rhode Island, USA. Combined Assembly of Gp0121717, Gp0123912, Gp0123935, Gp0139423, Gp0139424, Gp0139388, Gp0139387, Gp0139386, Gp0139385EnvironmentalOpen in IMG/M
3300011400Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT133_2EnvironmentalOpen in IMG/M
3300012206Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaGEnvironmentalOpen in IMG/M
3300012361Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaGEnvironmentalOpen in IMG/M
3300012363Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaGEnvironmentalOpen in IMG/M
3300012684Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ279 (21.06)EnvironmentalOpen in IMG/M
3300012931Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaGEnvironmentalOpen in IMG/M
3300012976Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaGEnvironmentalOpen in IMG/M
3300014303Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_TuleA_D1EnvironmentalOpen in IMG/M
3300014321Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleB_D1EnvironmentalOpen in IMG/M
3300014492Permafrost microbial communities from Stordalen Mire, Sweden - 612S2M metaGEnvironmentalOpen in IMG/M
3300014498Permafrost microbial communities from Stordalen Mire, Sweden - 812E2M metaGEnvironmentalOpen in IMG/M
3300015358Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300017659Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300017822Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2EnvironmentalOpen in IMG/M
3300017929Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_100EnvironmentalOpen in IMG/M
3300017935Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_40EnvironmentalOpen in IMG/M
3300017998Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_150EnvironmentalOpen in IMG/M
3300018009Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_40EnvironmentalOpen in IMG/M
3300018019Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_150EnvironmentalOpen in IMG/M
3300018033Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_10EnvironmentalOpen in IMG/M
3300018035Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_10EnvironmentalOpen in IMG/M
3300018044Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10EnvironmentalOpen in IMG/M
3300018047Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10EnvironmentalOpen in IMG/M
3300018052Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2EnvironmentalOpen in IMG/M
3300018062Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MGEnvironmentalOpen in IMG/M
3300024056Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG (PacBio error correction)EnvironmentalOpen in IMG/M
3300025324Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_1 (SPAdes)EnvironmentalOpen in IMG/M
3300025482Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210 shallow-092012 (SPAdes)EnvironmentalOpen in IMG/M
3300025966Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_TuleC_D2 (SPAdes)EnvironmentalOpen in IMG/M
3300025967Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_CattailC_D2 (SPAdes)EnvironmentalOpen in IMG/M
3300026463Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 7-17 CS6EnvironmentalOpen in IMG/M
3300026550Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)EnvironmentalOpen in IMG/M
3300027831Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T0Bare3Fresh (SPAdes)EnvironmentalOpen in IMG/M
3300027841Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - Low cellulose week 11 (SPAdes)EnvironmentalOpen in IMG/M
3300027843Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare3Fresh (SPAdes)EnvironmentalOpen in IMG/M
3300027902Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - CRP12 CR (SPAdes)EnvironmentalOpen in IMG/M
3300028577Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaGHost-AssociatedOpen in IMG/M
3300028652Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E3_3EnvironmentalOpen in IMG/M
3300029883I_Bog_E2 coassemblyEnvironmentalOpen in IMG/M
3300029987I_Fen_E3 coassemblyEnvironmentalOpen in IMG/M
3300030003Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_N2_3EnvironmentalOpen in IMG/M
3300030706Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG (v2)EnvironmentalOpen in IMG/M
3300031546Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23EnvironmentalOpen in IMG/M
3300031679Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23EnvironmentalOpen in IMG/M
3300031726Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_1EnvironmentalOpen in IMG/M
3300031873Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G15_0EnvironmentalOpen in IMG/M
3300031952Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_40EnvironmentalOpen in IMG/M
3300031954Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)EnvironmentalOpen in IMG/M
3300032044Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20EnvironmentalOpen in IMG/M
3300032160Sb_50d combined assembly (MetaSPAdes)EnvironmentalOpen in IMG/M
3300032173Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_topEnvironmentalOpen in IMG/M
3300032256Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_topEnvironmentalOpen in IMG/M
3300032783Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3EnvironmentalOpen in IMG/M
3300032892Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5EnvironmentalOpen in IMG/M
3300032897Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5EnvironmentalOpen in IMG/M
3300033158Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1EnvironmentalOpen in IMG/M
3300033402Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MNEnvironmentalOpen in IMG/M
3300033418Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D1_AEnvironmentalOpen in IMG/M
3300033483Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_May_M1_C1_D1_AEnvironmentalOpen in IMG/M
3300033485Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D5_AEnvironmentalOpen in IMG/M
3300033487Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_May_M1_C1_D6_AEnvironmentalOpen in IMG/M
3300033488Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_OW2_C1_D1_CEnvironmentalOpen in IMG/M
3300033521Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D1_BEnvironmentalOpen in IMG/M
3300033557Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D2_BEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
WSSedB2CaDRAFT_100190833300000316WetlandLARVQILKHAFGQLLPSELHTTQQLWKALRRGMGSAEQMLRFLAHSCKRSLLGDYTCLRPAP*
JGI10216J12902_10356395013300000956SoilGCLQRAWNRFLTRVDGLNNAFGQMLPAELHTAPPLWIQLRRCVGSAEDMLRFLAQNCKASLLGDYACLRPPA*
JGIcombinedJ13530_10277637513300001213WetlandILKHAFGQLLPSELHTTQQLWKALRRGMGSAEQMLRFLAHSCKRSLLGDYTCLRPAP*
JGIcombinedJ13530_10762469913300001213WetlandNILKESFGQILPSPLDTVQQLWKELRRGMGSAEDMLRFLAWSCKRSLLGNYACLRPAP*
JGI20214J14112_100317043300001279WetlandVEAGCLQRAWSRLLARVQILKHAFGQLLPSELHTTQQLWKALRRGMGSAEQMLRFLAHSCKRSLLGDYTCLRPAP*
JGI20214J51088_1081860513300003432WetlandWNRLLTRVEVLKNAFGQLLPSELHTGRQLWKELRHSVGSAEQMLRFLARCCKRSLLGDYACLRPVP*
Ga0055484_1000150253300004066Natural And Restored WetlandsAFGQLLPSKLHTAQQLWKALRRGMGSAEEMLRFLARSCKRSLLGDYTCLRPAP*
Ga0055484_1007690023300004066Natural And Restored WetlandsRFLTRVKVLQDAFGQILPAELHTAQQLWKELRRGVGSAESMLRLLARHCKRSLLGDYACLRPAP*
Ga0062383_1003584033300004778Wetland SedimentSNAFGQMLPVELPTAQELWKELRRAVGSTEQMLRFLAQSCKRSLLGDYVCLLPAI*
Ga0066699_1036279813300005561SoilRAWNRFLTRVKVLQDAFGQMLPSQLHTAQQLWKELRHGAGSAEDMLRFLARHCKRSLLGDYACLRPAP*
Ga0075018_1068949923300006172WatershedsAWNRFLTRVNILKDAFGQMLPSELHTAGQLWKELRRGAGSAEEMLRFLARHCKRSLLGDYACLRAAS*
Ga0105093_1070050823300009037Freshwater SedimentVLQDTFGQMLPAGPPTGAQLWKELRLAVGSAEAMLRFLARSCKRSLLGDYACLRPAP*
Ga0102851_1141967723300009091Freshwater WetlandsFLTRVEVLKNSFGQILLAERHTARQLWKELRRGMGSTEDMLRFLAQSCKRSLLGDYACLRPAP*
Ga0115027_1101673513300009131WetlandAITAGCLQRAWNRFLTRVEVLKTAFGQILPAVISTPQHLWQQLRRRVSTAEKMLRFLAQHGKRSLLGDYACLRPAP*
Ga0115027_1191145013300009131WetlandKNAFGQRLPSELHTDHSLWLELRRGVGSTEEMLRFLAQSCKRSLLGDYACLRPAP*
Ga0066709_10072027413300009137Grasslands SoilDAFGQILPSELHTAEQLWRELRRGLGSAEAMLRFLARHCKRSLLGDYACLRPAP*
Ga0113563_1215161413300009167Freshwater WetlandsAFGQVLPAELQTAQQLWKALRRGMGSAEAMLRFVARHCKRSLLGDYACLRPAP*
Ga0113563_1311342723300009167Freshwater WetlandsLQDAFCQILPAELLTAQQLWQALRRGVGSAEQMLRFLARHCKRSLLGDYACLRPAP*
Ga0116124_113895113300009634PeatlandLVLEDAFGQILPSELHTAEQVWKELRRGMGLAEDMLRFLARHCKRSLLGDYACLRPAP*
Ga0116124_123114113300009634PeatlandFGQILPAELHTARQLWKALRRGVGSAEAMLRFLARHCKRSLLGDYACLRPAP*
Ga0116120_114083223300009641PeatlandKVLTDTFGQILPAELHTARQLWKALRRGVGSAEAMLRFLARHCKRSLLGDYACLRPVP*
Ga0116120_123121923300009641PeatlandWNRLLARVLVLEDAFGQILPSELHTAEQVWKELRRGMGLAEDMLRFLARHCKRSLLGDYACLRPAP*
Ga0116132_111604213300009646PeatlandHRAWNRLLTRVNVLKDAFGQLLASELHTAGQLWKELRRGVGSAEQMLRFLARCCKRSLLGDYACLRPAP*
Ga0116223_1082279813300009839Peatlands SoilRVNLLKESFGQILPSELHTAGQLWKELRRGLGSAEDMLRFLARSCKRSLLGDYACLRAAP
Ga0134086_1023028513300010323Grasslands SoilAWKRLLTRVESLKNAFGQILPVELGTAEQLWKQLRRCVGSAEQMLRFLAQNCKRSLLGDYACLRPAP*
Ga0136449_10107401513300010379Peatlands SoilDAFGQTLPSELHTARQLCKELRRGVGSAEDMLRFLARHCKRSLLGDYACLRPAP*
Ga0118731_10043874623300010392MarineLERAWKRFLTRVEVLKNALGQILPLGIGNAQELWKQLRCCLGSTAAILRQLAEPGKRSLLGDYPCLRPAP*
Ga0137312_101446323300011400SoilGCLQRAWNRFLTRVQSLKDTFGQMLPSALHTGQQLWKQLRRVVGTAEDILRFLAEQGKCSLLGDYACLRPAP*
Ga0137380_1058871513300012206Vadose Zone SoilGCLQRAWNRFLTRVKVLQDTFGQILPAELHTARQLWRELRRSVGSAEDMLRFLARHGKRSLLGDYACLRPAP*
Ga0137360_1071761713300012361Vadose Zone SoilKRLLTRVESLKNALGQILPVELGTAEQLWKQLRRCVGSAEQMLRFLAQNCKRSLLGDYACLRPAP*
Ga0137390_1140382513300012363Vadose Zone SoilMVEAGCLQRAWNRFLTRVNLLKESFGQILPAELHTAEQLWKQLRRGMGSAQDMLRFLARHCKRSLLGDYAC
Ga0136614_1054722923300012684Polar Desert SandLQRAWNRFLARVEILKNAFGQMLPAELPTAQQLWKELRRVVGSTEAMLGFLAQSCKRSVLGDYTCLRPAT*
Ga0153915_1020964213300012931Freshwater WetlandsNRLKDSFGQILPPELHTAQQLWKELRHGLGPAEEMLRFLARHCKRSLLGDYACLRPAP*
Ga0134076_1020310313300012976Grasslands SoilRVKVLKDTFGQILPAELHTARQLWKELRRSVGSAEDMLRFLARHCKRSLLGDYACLRPAP
Ga0075358_114713713300014303Natural And Restored WetlandsVNILKDAFGQILPAELHTAQQLWKELRRGVGSVESMLRFLARHCKRSLLGDYACLRPVP*
Ga0075353_124103813300014321Natural And Restored WetlandsRFLTRVNLLKDAFGQMLPAELHTAQQLWQALRRGVGSAAALLRFLARHCKRSLLGDYACLRPAP*
Ga0182013_1006098513300014492BogGCLQRAWNRFLTRVNIIQDAFGQILPSELHTAPQLWIELRRGVGSAEDMLRFLARHCKRSLLGDYACLRPP*
Ga0182019_1079351623300014498FenAGCLQRAWNRFLTRVQVLQDAFGQILPAELHTAQQLWKELRRGVGSAESMLRFLARHCKRSLLGDYACLRPAP*
Ga0134089_1053995113300015358Grasslands SoilILKNSFGQILPAELHTAQQLWKEFRRGMGSAEDMLRFLAQHCKRSLLGDYACLRPAP*
Ga0134083_1039294223300017659Grasslands SoilLQRAWKRLLTRVESLKNAFGQILPVELGTAEQLWKQLRRCVGSAEQMLRFLAQNCKRSLLGDYACLRPAP
Ga0187802_1035416623300017822Freshwater SedimentGLVEAGCLHRAWDRFLTRVNTLKESFGQILPSELHTAGQLWKELRRGLGSAEDMLRFLARSCKRSLLGDYACLRSAR
Ga0187849_137608323300017929PeatlandARVNILKDAFGQILPSELRTARQLWKQLRRGVGSAEDMLRFLARHCKRSLLGDYACLRPA
Ga0187848_1000921383300017935PeatlandFLTRVTILKDAFGQTLPSGLHTAQQLWKELRRGTGSAEDMLRFLARHCKRSLLGDYACLHPAP
Ga0187870_125876413300017998PeatlandLQRAWNRFLTRVKVLKDAFGQILPAELHTAQQLWKELRRGVGSAESMLRFLARHCKRSLLGDYACLRPVP
Ga0187884_1022016223300018009PeatlandLQRAWNRFLTRVKVLQDTFGQILPAELHTAQQLWKELRRGMGSAESMLRFLARHCKRSLLGDYACLRPAP
Ga0187874_1042211813300018019PeatlandAFGQTLPSELRTARQLWKELRRGVGSAEDMLRFLARHCKRSLLGDYACLRPAP
Ga0187867_1035140523300018033PeatlandGQILPSELHTAGQLWQELRRGLGSAEEMLRFLARSCKRSLLGDYACLRTAP
Ga0187875_1017373413300018035PeatlandCLQRAWNRFLTRVKVLQDTFGQILPAELHTAQQLWKELRRGVGSAESMLRFLARHCKRSLLGDYACLRPVP
Ga0187875_1068656013300018035PeatlandPPPEAIEAGCLQRAWNRFLARVNILTDAFGQILPSELHTARQLWKELRRGMGSAEDMLRFLARHCKRSLLGDYACLCPAP
Ga0187890_1035077023300018044PeatlandLQRAWNRFLTRVNIIQDAFGQILPSELHTAPQLWIELRRGVGSAEDMLRFLARHCKRSLLGDYACLRPAP
Ga0187859_1051803823300018047PeatlandVEAGCLQRAWNRFLTRVKVLTDTFGQILPAELHTARQLWKALRRGVGSAEAMLRFLARHCKRSLLGDYACLRPAP
Ga0184638_125707913300018052Groundwater SedimentAGCLRRAWDRFLTRVNPLKDSFGQTLPAELHTAQQLWKELRRGVGSAESMLRFLARYCKRSLLGDYACLRPAP
Ga0187784_1078833313300018062Tropical PeatlandAGCLQRAWNRFLTRVNVLRDTFGQILPAEAGTAQQLWKQLRRGVGSAEQMLRFLAQHCKRSRLGDYACLRPAP
Ga0124853_111914213300024056Freshwater WetlandsEAGCLQRAWNRFLTRVEVLKNSFGQILLAERHTARQLWKELRRGMGSTEDMLRFLAQSCKRSLLGDYACLRPAP
Ga0209640_1078851823300025324SoilNRFLARVNVLKDAFGQILPTELHTAGQLWKELRRSVGSAEDMLAFLARSCKRSLLGDYACLRPAL
Ga0208715_104749723300025482Arctic Peat SoilQRAWKRFLTRVNRLKDAFGQMLPAELEGAEQLWKELRRTVGSAEDILRFLARNCNCSLLGDYACLRPAS
Ga0210105_100551733300025966Natural And Restored WetlandsILKHAFGQLLPSKLHTAQQLWKALRRGMGSAEEMLRFLARSCKRSLLGDYTCLRPAP
Ga0210136_102242713300025967Natural And Restored WetlandsAWSRLLARVQILKHAFGQLLPSELHTTQQLWKALRRGMGSAEQMLRFLAHSCKRSLLGDYTCLRPAP
Ga0256815_100567213300026463SedimentAGCLQRAWDRFLTRVQVLKDAFGQILPSELHTAQQLWKALRRGLGSAGQMLRFLAQACKRSLLGDYACLRPAP
Ga0209474_1069735723300026550SoilRRAWNRFLTRVKVLEDAFGQMLPGELHTAQQLWKELRRNVGSAEDMLRFLARHCKRSLLGDYACLRPAP
Ga0209797_1001006813300027831Wetland SedimentMQRAWKRFLTRAEVLSNAFGQMLPVELPTAQELWKELRRAVGSTEQMLRFLAQSCKRSLLGDYVCLLPAI
Ga0209262_1040775223300027841FreshwaterRVKVLQDTFGQILPAELHTAQQLWQELRRGVGSAESMLRFLARHCKRSLLGDYACLRPAP
Ga0209798_1038354723300027843Wetland SedimentGQMLPVELPTAQELWKELRRAVGSTEQMLRFLAQSCKRSLLGDYVCLLPAI
Ga0209048_1056338713300027902Freshwater Lake SedimentSGCLQRAWNRFLTRVKVLQDTFGQILPAELHTAQQLWKELRRGVGSAESMLRFLARHCKRSLLGDYACLRPAP
Ga0265318_1007929823300028577RhizosphereAWNRFLTRVQVLQDTFGQILPAELHTAQQLWQELRRGVGSAESMLRFLARHCKRSLLGDYACLRPAS
Ga0302166_1009088623300028652FenPIEAGCLQRAWNRFLTRVNILQDAFGQILPAELHTAQQLWKELRRGVGSAESMLRLLARHCKRSLLGDYACLRPVP
Ga0311327_1039969823300029883BogQDAFGQILPAELHTAQQLWKELRRGVGSAESMLRFLARHCKRSLLGDYACLRPAP
Ga0311334_1127528013300029987FenKVLQDTFGQILPAALHTAPQLWKELRRGVGSAESMLRFLARHCKRSLLGDYACLRPVP
Ga0302172_1015978123300030003FenEAGCLQRAWNRFLTRVNILQDAFGQILPAELHTAQQLWKQLRLGVGSTEQMLRFLARHCKRSLLGDYACLRPAP
Ga0310039_1022838913300030706Peatlands SoilGKLLKESFGQILPSELHTAQQLWKELRRGMGSAEDMLRFLARSCKRSLLGDYACLRAAP
Ga0318538_1007161633300031546SoilEAGCLQRAWKRFLTRVNHLKEAFGQILPAELHSAEQLWKELRRAMGSAEQILRFLAQSCKRSLLGDYACLRPAP
Ga0318561_1065496723300031679SoilNRLKEAFGQILPAELHSAEQLWKELRRAMGSAEQILRFLAQSCKRSLLGDYACLRPAP
Ga0302321_10017698033300031726FenLQRAWNRFLTRVEVLKNSFGQILPVQLHTARQLWKELRRGMGSTEDMLRFLAQSCKRSLLGDYACLRPAP
Ga0302321_10225502423300031726FenRAWNRFLTRVKVLQDTFGQILPAELHTAQQLWKELRRGVGSAESMLRFLARHCKRSLLGDYACLRPVP
Ga0315297_1014852713300031873SedimentAWNRFLTRVDRLKNAFGQMLRTGLNTAGQLWKEMRQSMGSGEQILRFLAQNCKCSLLGDYACLRPAI
Ga0315294_1100496213300031952SedimentRVLQDTFGQMILAGPHTALQLWKELRLAVGSAEEMLRFLARSCKRSLLGDYACLRPAP
Ga0306926_1011841653300031954SoilLKEAFGQILPAELHSAEQLWKELRRAMGSAEQILRFLAQSCKRSLLGDYACLRPAP
Ga0318558_1016044813300032044SoilFLTRVNRLKEAFGQILPAELHSAEQLWKELRRAMGSAEQILRFLAQSCKRSLLGDYACLRPAP
Ga0311301_1055365033300032160Peatlands SoilDAFGQILPAKLHTAQQLWKELRRGVGSAEKMLRFLARHCKRSLLGDYACLRPAP
Ga0311301_1103389213300032160Peatlands SoilDRFLTRGKLLKESFGQILPSELHTAQQLWKELRRGMGSAEDMLRFLARFCKRSLLGDYACLRPAP
Ga0311301_1189828013300032160Peatlands SoilFGQTLPSELHTARQLCKELRRGVGSAEDMLRFLARHCKRSLLGDYACLRPAP
Ga0315268_1009416343300032173SedimentKDAFGQVLPAELHTAQQLWKALRRGMGSAEAMLRFLARHCKRSLLGDYACLRPAP
Ga0315268_1043745623300032173SedimentPEPIEVGCLQRAWNRFLTRVKVLKDAFGQILPAELHTAQQLWKELRRGVGSAEGMLRFLARHCKRSLLGDYACLRPAP
Ga0315268_1084620223300032173SedimentFLTRVKVLQDAFGQILPAELHTAQQLWKALRRGVGSAEKMLRFLARHCKRSLLGDYACLRPAP
Ga0315271_1066634523300032256SedimentTFGQILPAELHTAQQLWKELRRGVGSAESMLRFLARHCKRSLLGDYACLRLAS
Ga0315271_1163614723300032256SedimentLTRVKVLKDAFGQILPAELHTAQQLWKELRRGVGSAEDMLRFLARHCKRSLLGDYACLRPAP
Ga0335079_1036097433300032783SoilPEAIEAGCLQRAWNRFLTRVTLLTDAFGQRLPSELRTARQLWKELRRGTGSAEDMLRFLARHCKRSLLGDYACLRPAP
Ga0335081_1273439013300032892SoilVNTLKESFGQILPSELHTAGQLWKELRRGLGSAEDMLRFLARSCKRSLLGDYACLRPAP
Ga0335071_1116542313300032897SoilWNRFLTRVQVLRDSFGQMLPSDLHTAGQLWKELRHSVGSTEQMLRFLAQSCKRSLLGDYACLRPAP
Ga0335071_1126061513300032897SoilFGQLLPSELHTVQQLWKELRRGMGSAEEMLRFLACSCKRSLLGDYACLRPAP
Ga0335077_1108759013300033158SoilLVEAGCLQRAWNRLLTRVQILKYAFGQLLPSELHTVQQLWKELRRGMGSAEEMLRFLARSCKRSLLGDYACLRPAP
Ga0326728_1020779313300033402Peat SoilRVTILKDAFGQTLPSELRTARQLWKELRRGVGLAEDMLRFLARHCKRSLLGDYACLRPAP
Ga0326728_1042501813300033402Peat SoilCLHRAWDRFLTRVNTLKESFGQILPSELHTAGQLWKELRRGLGSAEDMLRFLARSCKRSLLGDYACLRLAP
Ga0316625_10186274823300033418SoilGCLQRAWNRFLTRVQVLKDAFGQILPAELHTAQQLWKALRRGMGSAEKMLRFLARHCKRSLLGDYACLRPAS
Ga0316629_1078900613300033483SoilDAITAGCLQRAWNRFLTRVEVLKTAFGQILPAVISTPLHLWQQLRQCVGTAEQMLRFLAQHGKRSLLGDYACLKPAP
Ga0316626_1006972313300033485SoilEAGCLQRAWNRFLTRVNLLKEAFGQVLPAELQTAQQLWKALRRGMGSAEAMLRFVARHCKRSLLGDYACLRPAP
Ga0316630_1144566013300033487SoilEAGCLQRAWNRFLTRVQVLQDAFGQILPAELHTAQQLWKALRRGMGSAEKMLRFLARHCKRSLLGDYACLRPAS
Ga0316630_1169698413300033487SoilWNRFLTRVDVLKNAFGQRLPSDLHTGQSVWLELRRGVGSTEQMLRFLAQSCKRSLLGDYACLRPAF
Ga0316621_1087361223300033488SoilFLTRVTILKDAFGQILPAELHTAQQLWKELRRGVGSAESMLRFLARHCKRSLLGDYACLRPAP
Ga0316616_10453374713300033521SoilAGCLQRAWNRFLTRVEVLKNSFGQILPAERHTARQLWKELRRGMGSTEDMLRFLAQSCKRSLLGDYACLRPVP
Ga0316617_10093294223300033557SoilVLQDAFGQILPAELHTAQQLWKALRRGVGSAEKMLRFLARHCKRSLLGDYACLRPAP


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