Sample 3300000312

Overview

Basic Information
IMG/M Taxon OID	3300000312 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063443 \| Gp0053973 \| Ga0026462
Sample Name	Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site B2 Bulk
Sequencing Status	Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Dataset Contents
Total Genome Size	61310069
Sequencing Scaffolds	17
Novel Protein Genes	17
Associated Families	17

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	1
Not Available	6
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Azonexaceae → Dechloromonas → Dechloromonas aromatica	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → unclassified Geobacteraceae → Geobacteraceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Wetland Microbial Communities From Twitchell Island In The Sacramento Delta
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland → Wetland Microbial Communities From Twitchell Island In The Sacramento Delta

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → saline wetland → sediment
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Sediment (saline)

Location Information
Location	Twitchell Island in the Sacramento/San Joaquin Delta, CA
Coordinates	Lat. (^o)	38.10726	Long. (^o)	-121.648538	Alt. (m)	N/A	Depth (m)	.1
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F002989	Metagenome / Metatranscriptome	515	Y
F005490	Metagenome / Metatranscriptome	399	Y
F006851	Metagenome	363	Y
F020200	Metagenome	225	Y
F021446	Metagenome / Metatranscriptome	219	Y
F022094	Metagenome / Metatranscriptome	216	Y
F024002	Metagenome / Metatranscriptome	208	Y
F031716	Metagenome	182	Y
F032323	Metagenome	180	Y
F053932	Metagenome / Metatranscriptome	140	Y
F054133	Metagenome	140	Y
F055831	Metagenome / Metatranscriptome	138	Y
F071750	Metagenome	122	Y
F080208	Metagenome / Metatranscriptome	115	Y
F094060	Metagenome	106	Y
F097584	Metagenome	104	Y
F105433	Metagenome	100	Y

Family

Category

Number of Sequences

3D Structure?

F002989

Metagenome / Metatranscriptome

515

F005490

Metagenome / Metatranscriptome

399

F006851

Metagenome

363

F020200

Metagenome

225

F021446

Metagenome / Metatranscriptome

219

F022094

Metagenome / Metatranscriptome

216

F024002

Metagenome / Metatranscriptome

208

F031716

Metagenome

182

F032323

Metagenome

180

F053932

Metagenome / Metatranscriptome

140

F054133

Metagenome

140

F055831

Metagenome / Metatranscriptome

138

F071750

Metagenome

122

F080208

Metagenome / Metatranscriptome

115

F094060

Metagenome

106

F097584

Metagenome

104

F105433

Metagenome

100

Scaffold	Taxonomy	Length	IMG/M Link
WSSedB2BaDRAFT_1001318	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	1828	Open in IMG/M
WSSedB2BaDRAFT_1001539	Not Available	1683	Open in IMG/M
WSSedB2BaDRAFT_1003357	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	1142	Open in IMG/M
WSSedB2BaDRAFT_1004143	Not Available	1029	Open in IMG/M
WSSedB2BaDRAFT_1006874	Not Available	818	Open in IMG/M
WSSedB2BaDRAFT_1007150	All Organisms → cellular organisms → Bacteria → Proteobacteria	804	Open in IMG/M
WSSedB2BaDRAFT_1008378	All Organisms → cellular organisms → Bacteria	752	Open in IMG/M
WSSedB2BaDRAFT_1009898	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	701	Open in IMG/M
WSSedB2BaDRAFT_1010362	All Organisms → cellular organisms → Bacteria	688	Open in IMG/M
WSSedB2BaDRAFT_1011719	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	653	Open in IMG/M
WSSedB2BaDRAFT_1012959	Not Available	627	Open in IMG/M
WSSedB2BaDRAFT_1016801	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	565	Open in IMG/M
WSSedB2BaDRAFT_1017426	Not Available	557	Open in IMG/M
WSSedB2BaDRAFT_1020807	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	519	Open in IMG/M
WSSedB2BaDRAFT_1021113	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Azonexaceae → Dechloromonas → Dechloromonas aromatica	516	Open in IMG/M
WSSedB2BaDRAFT_1021604	Not Available	512	Open in IMG/M
WSSedB2BaDRAFT_1022236	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → unclassified Geobacteraceae → Geobacteraceae bacterium	505	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

WSSedB2BaDRAFT_1001318

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales

1828

Open in IMG/M

WSSedB2BaDRAFT_1001539

Not Available

1683

Open in IMG/M

WSSedB2BaDRAFT_1003357

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium

1142

Open in IMG/M

WSSedB2BaDRAFT_1004143

Not Available

1029

Open in IMG/M

WSSedB2BaDRAFT_1006874

Not Available

818

Open in IMG/M

WSSedB2BaDRAFT_1007150

All Organisms → cellular organisms → Bacteria → Proteobacteria

804

Open in IMG/M

WSSedB2BaDRAFT_1008378

All Organisms → cellular organisms → Bacteria

752

Open in IMG/M

WSSedB2BaDRAFT_1009898

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria

701

Open in IMG/M

WSSedB2BaDRAFT_1010362

All Organisms → cellular organisms → Bacteria

688

Open in IMG/M

WSSedB2BaDRAFT_1011719

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium

653

Open in IMG/M

WSSedB2BaDRAFT_1012959

Not Available

627

Open in IMG/M

WSSedB2BaDRAFT_1016801

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria

565

Open in IMG/M

WSSedB2BaDRAFT_1017426

Not Available

557

Open in IMG/M

WSSedB2BaDRAFT_1020807

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria

519

Open in IMG/M

WSSedB2BaDRAFT_1021113

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Azonexaceae → Dechloromonas → Dechloromonas aromatica

516

Open in IMG/M

WSSedB2BaDRAFT_1021604

Not Available

512

Open in IMG/M

WSSedB2BaDRAFT_1022236

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → unclassified Geobacteraceae → Geobacteraceae bacterium

505

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
WSSedB2BaDRAFT_1001318	WSSedB2BaDRAFT_10013182	F094060	ENVPIDATKTYSIELRLEGYKPYTSSGSVSPGQNVVINAALTPLAQPTTKSPLSPLPIAAALSIMGIVSVVLMKKR*
WSSedB2BaDRAFT_1001539	WSSedB2BaDRAFT_10015392	F021446	MKTLSIALMAAFMLVLAATSTGQAQSAAEDIYNDPSPGGKYVYRGCNLAQVIFIRGDKLSEINELTLIIEVQGGQNSHTTRLTFPILAKRQEGNKLILDYQWPLGGDTYEATIIGGTLINRKTKGYLAGIREEMFTRE*
WSSedB2BaDRAFT_1003357	WSSedB2BaDRAFT_10033572	F055831	MQTLAHVKLLLLDVLESAFQAGDVHATQQLGVNMSNAVKRDGVVIIQNQNVEVYARIMPLMVKALKACDALETHGSHQPTVTIEPEHRQLPP
WSSedB2BaDRAFT_1004143	WSSedB2BaDRAFT_10041431	F032323	ELKSRVLYAILSQNPSYTVKEYKEEPDPADSNYHIISLTAYEKGPYRLIRKILAEFIKNNEITCLNGPSSDLLQ*
WSSedB2BaDRAFT_1006874	WSSedB2BaDRAFT_10068741	F071750	KKTLALLILCCLNSSVVNCQLLSNPSLTVEDFEIALTNTSHLIRILEKHNFIYSTVGETKVITPGTMPNPLVPDLRASNSKKWEPKKQGEQPIVEVDMYEWEPNYAPHSEVIKTIRVLIRRDSTYADKTDKFLEEMKSKYPNRRKRYFRNSDQFKAYGEAYNVFTNNSKIEVRTETEKPIFDRFYILDFDLIK*
WSSedB2BaDRAFT_1007150	WSSedB2BaDRAFT_10071502	F022094	MPLPLFRLPPAAQRDWVREALSRPPPPSARNLSDGFRLPGRHGEPTPAAVL
WSSedB2BaDRAFT_1008378	WSSedB2BaDRAFT_10083782	F024002	FRTVPVSAGVIRYLQMAAMIALILMAAKDCGSADLDGAHDPQMIAGQPMRFSICRAVLTEDVRHLKTARCSHLLAGLRIFFGLFIKRTRNLGQVKPTDMQIYCGRYRRPVSQKQLDMVEACSRFDQVGGKAVP*
WSSedB2BaDRAFT_1009898	WSSedB2BaDRAFT_10098981	F080208	EVEEFLNVINECDVLREDIDDIRGRVALTKAEGGKLAQATEHVDKAKTILADLFPTIRSLDDEVREDLSEELNETD*
WSSedB2BaDRAFT_1010362	WSSedB2BaDRAFT_10103622	F054133	MLLWALAVSMVVAGCATTATPRVDEGELLALGFKVLVATTTVQQEWVQTLPPGQIRPMQRSGRKFFIYPDALRNRIYVGGPNEFAAYQELHPESRQGEPDAANRGVAYSAKQYDAMRAATARDLSNPFLGATWVDLGW*
WSSedB2BaDRAFT_1011719	WSSedB2BaDRAFT_10117191	F002989	MARFQAAQPNGVAVQELEILVRTAVFKSANQLVGFLLQQAADRIDAAYQPQPGQQRKGRESLQVHTLFGRFELRR
WSSedB2BaDRAFT_1012959	WSSedB2BaDRAFT_10129591	F005490	MDLMKDARRLASIGTFFIIVGWVFVIYAVIAGLAWWIDLAGRPAFSIIEGLAISLAAIGAPVFLAFVVAGFGYALRLFALYVGSKSA*
WSSedB2BaDRAFT_1016801	WSSedB2BaDRAFT_10168011	F097584	PPFDPGKLILLVQRDGRIRFAGPDRVRIERGAPALTERFALVRDFLARLA*
WSSedB2BaDRAFT_1017426	WSSedB2BaDRAFT_10174261	F031716	MSRFTPGPWLVKEENGSYGVFSNDALSAITLSDDIQDKDAEKANAHLMATAPRLLEIIKEIKEHLDNNMIVTEEGLKINDSHLRESIIDAILRAEGYRL*
WSSedB2BaDRAFT_1020807	WSSedB2BaDRAFT_10208072	F053932	MNRWLPYVMFPRPGWFILHAAVIALIFFLGYSVKF*
WSSedB2BaDRAFT_1021113	WSSedB2BaDRAFT_10211131	F006851	MARTAKLDLRAFQQELATRLASKTAAQVESSRLGLSFGGGNWLIRLSDAGEVV
WSSedB2BaDRAFT_1021604	WSSedB2BaDRAFT_10216041	F105433	TRIEEASDSLNTGKFYILLLFVSLIGVIGALMMIAFIFLQDILTAILWKDIPVDSLTPVFNPGILVICLAGGLGAGVIRHYFKGEIAIMAEDLXEFNEKGRFTLKRGLELFLRGLVSLVCGAPLGPEAPLTVSTGAVGGIIAEKARMPPPVVTLSALSAISGFFGAFLTS
WSSedB2BaDRAFT_1022236	WSSedB2BaDRAFT_10222361	F020200	MCWVCDRLENLVSGWNEERNFQEQTSSDDYHRGLSKGFSECVKDLSEAVASMRLKGICERFPEYNGPFDGKQRWDILNE

Scaffold ID

Protein ID

Family

Sequence

WSSedB2BaDRAFT_1001318

WSSedB2BaDRAFT_10013182

F094060

ENVPIDATKTYSIELRLEGYKPYTSSGSVSPGQNVVINAALTPLAQPTTKSPLSPLPIAAALSIMGIVSVVLMKKR*

WSSedB2BaDRAFT_1001539

WSSedB2BaDRAFT_10015392

F021446

MKTLSIALMAAFMLVLAATSTGQAQSAAEDIYNDPSPGGKYVYRGCNLAQVIFIRGDKLSEINELTLIIEVQGGQNSHTTRLTFPILAKRQEGNKLILDYQWPLGGDTYEATIIGGTLINRKTKGYLAGIREEMFTRE*

WSSedB2BaDRAFT_1003357

WSSedB2BaDRAFT_10033572

F055831

MQTLAHVKLLLLDVLESAFQAGDVHATQQLGVNMSNAVKRDGVVIIQNQNVEVYARIMPLMVKALKACDALETHGSHQPTVTIEPEHRQLPP

WSSedB2BaDRAFT_1004143

WSSedB2BaDRAFT_10041431

F032323

ELKSRVLYAILSQNPSYTVKEYKEEPDPADSNYHIISLTAYEKGPYRLIRKILAEFIKNNEITCLNGPSSDLLQ*

WSSedB2BaDRAFT_1006874

WSSedB2BaDRAFT_10068741

F071750

KKTLALLILCCLNSSVVNCQLLSNPSLTVEDFEIALTNTSHLIRILEKHNFIYSTVGETKVITPGTMPNPLVPDLRASNSKKWEPKKQGEQPIVEVDMYEWEPNYAPHSEVIKTIRVLIRRDSTYADKTDKFLEEMKSKYPNRRKRYFRNSDQFKAYGEAYNVFTNNSKIEVRTETEKPIFDRFYILDFDLIK*

WSSedB2BaDRAFT_1007150

WSSedB2BaDRAFT_10071502

F022094

MPLPLFRLPPAAQRDWVREALSRPPPPSARNLSDGFRLPGRHGEPTPAAVL

WSSedB2BaDRAFT_1008378

WSSedB2BaDRAFT_10083782

F024002

FRTVPVSAGVIRYLQMAAMIALILMAAKDCGSADLDGAHDPQMIAGQPMRFSICRAVLTEDVRHLKTARCSHLLAGLRIFFGLFIKRTRNLGQVKPTDMQIYCGRYRRPVSQKQLDMVEACSRFDQVGGKAVP*

WSSedB2BaDRAFT_1009898

WSSedB2BaDRAFT_10098981

F080208

EVEEFLNVINECDVLREDIDDIRGRVALTKAEGGKLAQATEHVDKAKTILADLFPTIRSLDDEVREDLSEELNETD*

WSSedB2BaDRAFT_1010362

WSSedB2BaDRAFT_10103622

F054133

MLLWALAVSMVVAGCATTATPRVDEGELLALGFKVLVATTTVQQEWVQTLPPGQIRPMQRSGRKFFIYPDALRNRIYVGGPNEFAAYQELHPESRQGEPDAANRGVAYSAKQYDAMRAATARDLSNPFLGATWVDLGW*

WSSedB2BaDRAFT_1011719

WSSedB2BaDRAFT_10117191

F002989

MARFQAAQPNGVAVQELEILVRTAVFKSANQLVGFLLQQAADRIDAAYQPQPGQQRKGRESLQVHTLFGRFELRR

WSSedB2BaDRAFT_1012959

WSSedB2BaDRAFT_10129591

F005490

MDLMKDARRLASIGTFFIIVGWVFVIYAVIAGLAWWIDLAGRPAFSIIEGLAISLAAIGAPVFLAFVVAGFGYALRLFALYVGSKSA*

WSSedB2BaDRAFT_1016801

WSSedB2BaDRAFT_10168011

F097584

PPFDPGKLILLVQRDGRIRFAGPDRVRIERGAPALTERFALVRDFLARLA*

WSSedB2BaDRAFT_1017426

WSSedB2BaDRAFT_10174261

F031716

MSRFTPGPWLVKEENGSYGVFSNDALSAITLSDDIQDKDAEKANAHLMATAPRLLEIIKEIKEHLDNNMIVTEEGLKINDSHLRESIIDAILRAEGYRL*

WSSedB2BaDRAFT_1020807

WSSedB2BaDRAFT_10208072

F053932

MNRWLPYVMFPRPGWFILHAAVIALIFFLGYSVKF*

WSSedB2BaDRAFT_1021113

WSSedB2BaDRAFT_10211131

F006851

MARTAKLDLRAFQQELATRLASKTAAQVESSRLGLSFGGGNWLIRLSDAGEVV

WSSedB2BaDRAFT_1021604

WSSedB2BaDRAFT_10216041

F105433

TRIEEASDSLNTGKFYILLLFVSLIGVIGALMMIAFIFLQDILTAILWKDIPVDSLTPVFNPGILVICLAGGLGAGVIRHYFKGEIAIMAEDLXEFNEKGRFTLKRGLELFLRGLVSLVCGAPLGPEAPLTVSTGAVGGIIAEKARMPPPVVTLSALSAISGFFGAFLTS

WSSedB2BaDRAFT_1022236

WSSedB2BaDRAFT_10222361

F020200

MCWVCDRLENLVSGWNEERNFQEQTSSDDYHRGLSKGFSECVKDLSEAVASMRLKGICERFPEYNGPFDGKQRWDILNE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300000312: Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site B2 Bulk

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences