Basic Information | |
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Family ID | F097584 |
Family Type | Metagenome |
Number of Sequences | 104 |
Average Sequence Length | 39 residues |
Representative Sequence | KDGRIRFAGPDRVRIERAAPTLSDRVGLVREFLGKLT |
Number of Associated Samples | 100 |
Number of Associated Scaffolds | 104 |
Quality Assessment | |
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Transcriptomic Evidence | No |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 0.00 % |
% of genes near scaffold ends (potentially truncated) | 97.12 % |
% of genes from short scaffolds (< 2000 bps) | 91.35 % |
Associated GOLD sequencing projects | 97 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.47 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (86.538 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen (11.539 % of family members) |
Environment Ontology (ENVO) | Unclassified (35.577 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere (40.385 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 36.92% β-sheet: 0.00% Coil/Unstructured: 63.08% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.47 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Wetland Sediment Bog Forest Soil Wetland Sediment Polar Desert Sand Natural And Restored Wetlands Wetland Sediment Soil Vadose Zone Soil Terrestrial Soil Tropical Forest Soil Grasslands Soil Permafrost Soil Grasslands Soil Grass Soil Soil Hardwood Forest Soil Soil Soil Natural And Restored Wetlands Soil Prmafrost Soil Soil Forest Soil Corn, Switchgrass And Miscanthus Rhizosphere Corn Rhizosphere Fen Peat Soil Arabidopsis Rhizosphere Corn Rhizosphere Switchgrass Rhizosphere Arabidopsis Thaliana Rhizosphere Miscanthus Rhizosphere Miscanthus Rhizosphere Switchgrass Rhizosphere Populus Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Miscanthus Rhizosphere Switchgrass Rhizosphere Switchgrass Rhizosphere Corn Rhizosphere Activated Sludge |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
E4A_11143280 | 2170459003 | Grass Soil | VQQDGRYRFAGPDRVRIERAAPTLEERVALVEAFLGRLT |
WSSedB2BaDRAFT_10168011 | 3300000312 | Wetland | PPFDPGKLILLVQRDGRIRFAGPDRVRIERGAPALTERFALVRDFLARLA* |
JGI12635J15846_102414743 | 3300001593 | Forest Soil | GRYRFAGPDRVRIERAAPTLEERVALVEGFLGRLT* |
Ga0055499_101057321 | 3300004047 | Natural And Restored Wetlands | GKLILNMQRDGRTRFAGPDRVRIDRASPALADRVALVRSFLAQLA* |
Ga0062386_1015812622 | 3300004152 | Bog Forest Soil | IQKDGRYRLAGQDRVRIERAAPSLEERVALVREFLGRLA* |
Ga0066677_102019552 | 3300005171 | Soil | IQKDGRHRFAGQDRVRIERAAPSLEERSALVREFLGRLA* |
Ga0066679_100291984 | 3300005176 | Soil | VQQDGRYRFAGPDRVRIERAAPTLEERVALVESFLGRLT* |
Ga0070666_108649941 | 3300005335 | Switchgrass Rhizosphere | LEVQRDGRTRFAGPDRIRLERAAPTLDDRVALVRDFLGRL* |
Ga0070705_1006848101 | 3300005440 | Corn, Switchgrass And Miscanthus Rhizosphere | LVQRDGRIRFAGQDRVRIERAAPALAERVGLVVDFLGRLR* |
Ga0070663_1001514781 | 3300005455 | Corn Rhizosphere | PPFDAGKLIALIQQDGRYRFAGQDRVRIERAAPAVEDRVGLIEEFLGRLR* |
Ga0068867_1015673321 | 3300005459 | Miscanthus Rhizosphere | VAMIRNDGRLRFAGPDRIRIDRAAPTLADRVTLVKEFVGRIG* |
Ga0070695_1012757231 | 3300005545 | Corn, Switchgrass And Miscanthus Rhizosphere | AIVQKDGRVRFAGPDKVRIECAAPALADRVALVRDFVGKLT* |
Ga0070696_1000124361 | 3300005546 | Corn, Switchgrass And Miscanthus Rhizosphere | IALIQQDGRYRFAGQDRVRIERAAPAVEDRVGLIEEFLGRLR* |
Ga0066700_108510502 | 3300005559 | Soil | RHRFAGQNRVRIERAAPSLDQRVALVREFLGRLS* |
Ga0066708_104760672 | 3300005576 | Soil | IQKDRRHKLAGPDKVRIEREAPTIEDRVAVVREFLGRLA* |
Ga0068857_1006765991 | 3300005577 | Corn Rhizosphere | RIRFAGPDRIRIERAAPTLNDRVAVVRDFLGKLT* |
Ga0068854_1022282612 | 3300005578 | Corn Rhizosphere | QRDGRTRFAGPDRVRIDRAAPTLADRVALVRSFLGQLA* |
Ga0068859_1001558541 | 3300005617 | Switchgrass Rhizosphere | MIRNDGRLRFAGPDRIRIDRAAPTLADRVTLVKEFVGRIG* |
Ga0068861_1000294256 | 3300005719 | Switchgrass Rhizosphere | GRVRFAGPDKVRIECAAPALADRVALVRDFAGKLT* |
Ga0068851_104160971 | 3300005834 | Corn Rhizosphere | DGRIRFAGPDRVRIDRGAPTLAERVALVRDFLAKLA* |
Ga0068870_103276834 | 3300005840 | Miscanthus Rhizosphere | LIRFAGPDRIRIERAAPALAERVALVREFIERLK* |
Ga0097621_10000137418 | 3300006237 | Miscanthus Rhizosphere | DGRVRFAGPDKVRIECAAPALADRVALVRDFAGKLT* |
Ga0075425_1024630562 | 3300006854 | Populus Rhizosphere | LVQRDGRMRFAGPDRLRIEQAAPTLDERVTLVRDFVARLK* |
Ga0075434_1005343331 | 3300006871 | Populus Rhizosphere | RMRFAGPDRIRIEQAAPTLDERVTLVRDFLTRLK* |
Ga0075434_1006319362 | 3300006871 | Populus Rhizosphere | IPIIRNDGRVRFAGPDRLRIDRAAPTLAERVSLVKEFIGRLN* |
Ga0075426_112194071 | 3300006903 | Populus Rhizosphere | AGKLIALIQQDGRYRFAGQDRVRIERAAPAVEDRVGLIEEFLGRLR* |
Ga0075435_1000220885 | 3300007076 | Populus Rhizosphere | GRHRFAGQNRVRIDRAAPTLDERVALVREFLGRLA* |
Ga0075418_124379012 | 3300009100 | Populus Rhizosphere | GRTRFAGPDRVRLERAAPTLDERYALVRDFLNRL* |
Ga0066709_1045655491 | 3300009137 | Grasslands Soil | KLISLVQRDGHYRFAGQDRVRIERAAPELADRVVLVEEFLGKLK* |
Ga0105243_124227701 | 3300009148 | Miscanthus Rhizosphere | GRIRFHGQDRIRIERGAPTLADRVALVRDFLGKLQ* |
Ga0126374_113949021 | 3300009792 | Tropical Forest Soil | RVRFAGPDRIRIDRPAPTLAERVALVKEFIGRLA* |
Ga0131092_113985841 | 3300009870 | Activated Sludge | RTRFSGPDRVRIDRAAPMLDERIALVREFLGTLA* |
Ga0134067_103161142 | 3300010321 | Grasslands Soil | DGRHRFAGQDRVRIERAAPTLEERSALVREFLARLA* |
Ga0126379_101366454 | 3300010366 | Tropical Forest Soil | QKDGRHRLAGQDRVRIERAAPALEERVALVREFLSRLS* |
Ga0126383_116843822 | 3300010398 | Tropical Forest Soil | GRMRFAGPDRIRIDRAAPTLDERVALVRDFLARLR* |
Ga0126383_134515701 | 3300010398 | Tropical Forest Soil | KDGRYRLAGPDKVRIERAAPMLDERVTSVREFLATLS* |
Ga0134121_114347832 | 3300010401 | Terrestrial Soil | ALMKVDGHIRFAGPNRVRIERGAPGLPDRVALIRDFLARLV* |
Ga0120134_10348211 | 3300012004 | Permafrost | QKDGRVRFAGPDRVRIERAAATLADRIALVREFIGTLV* |
Ga0136632_105347812 | 3300012093 | Polar Desert Sand | VQKDGRIRFAGNDKIRIERGAPMLAERVALVQDFLVGLK* |
Ga0137363_104542502 | 3300012202 | Vadose Zone Soil | LVQRDGRYRFAGQDRVRIERAAPMLGDRVALVEEFLTKLR* |
Ga0137370_103658771 | 3300012285 | Vadose Zone Soil | GRHRFAGQNRVRIERAAPSLDERVALVREFLGRLA* |
Ga0137366_105227371 | 3300012354 | Vadose Zone Soil | KDGRHRFAGQDRVRIERAAPTLEERSALVREFLARLA* |
Ga0137384_113413521 | 3300012357 | Vadose Zone Soil | RYRFAGADRVRIERAAPSLDERVALVEEFLSKVS* |
Ga0136613_105375631 | 3300012681 | Polar Desert Sand | FDAANLITRVQKDGRIRFAGNDKIRIERGAPMLAERVALVQDFLVGLK* |
Ga0164241_110708621 | 3300012943 | Soil | DGRIRFAGPDRIRIDHAAPGLVERIALVRDFLGKLG* |
Ga0157375_105470712 | 3300013308 | Miscanthus Rhizosphere | RNDGRVRFAGPDRVRIDRAAPTLAERVALVKEFVAKLA* |
Ga0075340_11264312 | 3300014304 | Natural And Restored Wetlands | LDGRIRFAGPDRIRIERAAPALADRFALVKDFIARLA* |
Ga0163163_124714931 | 3300014325 | Switchgrass Rhizosphere | QKDVRIRFAGPDRVRIERAAPTLSERIALVRDFLASLR* |
Ga0157380_134183871 | 3300014326 | Switchgrass Rhizosphere | EVQRDGRTRFAGPDRIRLERAAPTLDDRVALVRDFLGRL* |
Ga0157379_100788313 | 3300014968 | Switchgrass Rhizosphere | KDGRVRFAGPDRIRIERAAPTLAERVAVIREFLEMLR* |
Ga0132255_1044748481 | 3300015374 | Arabidopsis Rhizosphere | VQKDGRIRFAGPDRVRIDRAAPELADRVGLVREFLGRLD* |
Ga0190264_120397721 | 3300019377 | Soil | DGRVRFAGPDRVRIERAAPALADRVTLVKEFLAKVSGSDQRPAA |
Ga0224510_102671591 | 3300022309 | Sediment | GRTRFAGPDRVRIDRAAPALAERAALVREFFARLR |
Ga0207680_109261892 | 3300025903 | Switchgrass Rhizosphere | NDGRLRFAGPDRIRIDRAAPTLADRVTLVKEFVGRIG |
Ga0207660_106536152 | 3300025917 | Corn Rhizosphere | KLIALIQQDGRYRFAGQDRVRIERAAPAVEDRVGLIEEFLGKLR |
Ga0207644_118476711 | 3300025931 | Switchgrass Rhizosphere | DGHIRFAGPDRIRIERAAPALAERVALVREFIERLK |
Ga0207689_116810651 | 3300025942 | Miscanthus Rhizosphere | AGKLIALIQQDGRYRFAGQDRVRIERAAPAVEDRVGLIEEFLGRLR |
Ga0207712_106970522 | 3300025961 | Switchgrass Rhizosphere | AEEFHDGRIRFAGQDRVRIERAAPALAERVGLVVEFLGRLR |
Ga0207668_110657812 | 3300025972 | Switchgrass Rhizosphere | MAQSIEVQRDGRTRFAGPDRIRLERAAPTLDDRVALVRDFLGRL |
Ga0210117_10338492 | 3300025985 | Natural And Restored Wetlands | REDGRVRFAGPDRVKIECAAPTLADRVALVREFAGRLA |
Ga0207703_121537011 | 3300026035 | Switchgrass Rhizosphere | LIALIQQDGRYRFAGQDRVRIERAAPTVEDRVGLIEEFLGRLR |
Ga0207639_116764692 | 3300026041 | Corn Rhizosphere | LLVQKDGRIRFAGPDRVRIERAAPTLADRVTLVGDFLGRLV |
Ga0207674_105928211 | 3300026116 | Corn Rhizosphere | KDGRIRFAGPDRVRIERAAPTLSDRVGLVREFLGKLT |
Ga0209863_100939711 | 3300026281 | Prmafrost Soil | RDGRVRFHGQDRIRIERGAPTLIDRVALVREFLGKLK |
Ga0209890_102150412 | 3300026291 | Soil | LIALVQQDGRYRFAGPDRIRIERAAPSLEERVTLVESFLGRLA |
Ga0209808_12258182 | 3300026523 | Soil | IQKDRRHKLAGPDKVRIEREAPTIEDRVAVVREFLGRLA |
Ga0209807_12604881 | 3300026530 | Soil | LIVQRDGRIRFAGQDRVRIERAAPTLAERVALVEDFLGRLR |
Ga0209999_10286812 | 3300027543 | Arabidopsis Thaliana Rhizosphere | QKDGRIRFAGPDRIRIERGAPTLNERVGLVRDFLTKLV |
Ga0208991_11298271 | 3300027681 | Forest Soil | GRYRFAGPDRIRIERAAPTLEERVALVEAFLGRLT |
Ga0209797_104654251 | 3300027831 | Wetland Sediment | DGRFRFAGPDRLRIEWPTRTLDDRVTLVKDFLKKLA |
Ga0209496_102844362 | 3300027890 | Wetland | VQRDGRFRFAGPDRVRIEKAAPVLAERVALVREFLGRLA |
Ga0268266_115456102 | 3300028379 | Switchgrass Rhizosphere | VQKDGRVRFAGPDRIRIERAAPTLAERVAVIREFLEMLR |
Ga0268265_121409272 | 3300028380 | Switchgrass Rhizosphere | MQRDGRTRFAGPDRVRIDRAAPTLADRVALVRSFLGQLA |
Ga0302160_101671771 | 3300028665 | Fen | GRIRFHGQDRIRIERGAPTLVDRVALVRDFLGKLK |
Ga0311332_117815312 | 3300029984 | Fen | GRIRFHGQDRIRIERGAPTLVDRVNLVREFLGRLG |
Ga0311334_108131412 | 3300029987 | Fen | LILLVQKDGRIRFAGQDRIRIERGAPTLGDRIALVGDFLRRLA |
Ga0311365_100531661 | 3300029989 | Fen | LVQKDGRIRFHGQDRIRIERGAPTLVDRVALVRDFLGKLK |
Ga0311337_117376572 | 3300030000 | Fen | LEQKDGRSRFHGQDRIRIERGAPTLVDRVALVRDFLGKLK |
Ga0302172_102271722 | 3300030003 | Fen | DGRYRFAGQDRVRIERAAPTIDDRLVLVKEFLGKLQ |
Ga0311349_108309252 | 3300030294 | Fen | RDGRYRFAGQDRVRIERAAPSIDDRLALVQEFLGRLA |
Ga0311349_114319592 | 3300030294 | Fen | QKDGRIRFHGQDRIRIERGAPTLVDRVALVRDFLGKLK |
Ga0311366_105700431 | 3300030943 | Fen | DGRYRFAGQDRVRIERAAPTIDDRLALVQEFLGKLQ |
Ga0311366_115260282 | 3300030943 | Fen | KDGRIRFHGQDRIRIERGAPTLVDRVALVRDFLGKLK |
Ga0307497_102579261 | 3300031226 | Soil | LIQQDGRYRFAGQDRVRIERAAPTVEDRVGLIEEFLGRLR |
Ga0302323_1017878842 | 3300031232 | Fen | GRIRFAGPDRVRIERAAPSVAERVALVRDFLGRLQ |
Ga0307506_105302201 | 3300031366 | Soil | RDGRVRFAGPDRLRIDRAAPTLGERVALVRGFLEKLT |
Ga0310813_103840031 | 3300031716 | Soil | KLIALIQQDGRYRFAGQDRVRIERAAPAVEDRVGLIEEFLGRLR |
Ga0302321_1014943871 | 3300031726 | Fen | LILLVQKDGRIRFHGQDRIRIERGAPTLVDRVNLVREFLGRLG |
Ga0310907_101891891 | 3300031847 | Soil | RLILHMQRDGRTRFAGPDRVRIERAAPALDERVALVRGFLATLA |
Ga0315297_116325132 | 3300031873 | Sediment | VQKDGRIRFAGPDRVRIERAAPMLADRFALVKDFIARLA |
Ga0315274_105866572 | 3300031999 | Sediment | MQEDGRVRFAGPDRVRIERAAPTLADRFALVRDFVARLA |
Ga0310897_100964173 | 3300032003 | Soil | QRDGRTRFAGPDRVRIERAAPALDERVALVRGFLATLA |
Ga0318514_103344772 | 3300032066 | Soil | GTHRLAGPNRVRIERAAPSLNERAVLVREFLSQLG |
Ga0308173_117050992 | 3300032074 | Soil | KDGRIRFAGPDRLRIESAAPALSDRVTLVRDFLAKLA |
Ga0318518_106904781 | 3300032090 | Soil | GRYRFAGQDRVRIERAAPELADRVATVGEFLEKLR |
Ga0310895_103536471 | 3300032122 | Soil | PARLILHMQRDGRTRFAGPDRVRIERAAPALDERVALVRGFLATLA |
Ga0307472_1014440602 | 3300032205 | Hardwood Forest Soil | DGRIRFAGPERIRIERAAPTLQERVALLRDFLGKVR |
Ga0315270_103975352 | 3300032275 | Sediment | QKDGRIRFHGPDRVRIERAAPALADRVALLREFLGRLA |
Ga0335083_107435392 | 3300032954 | Soil | GRVRFAGPDRVRIDRAAPALAERVALVKEFIGKLA |
Ga0318519_104266461 | 3300033290 | Soil | RSRRTRFAGPDRVRLERAAPTLDERVQLVRDFLSRL |
Ga0310810_105211523 | 3300033412 | Soil | LIQQDGRYRFAGQDRVRIERAAPAVEDRVGLIEEFLGRLR |
Ga0316603_107036961 | 3300033413 | Soil | QKDGRIRFAGPDRVRIDRAAPTLAERIMLVKDFLGRLG |
Ga0316601_1013935122 | 3300033419 | Soil | LMVQKDGRIRFAGPDRLRIERAAPTLSDRAALIKEFLGRLG |
Ga0326723_0200105_3_140 | 3300034090 | Peat Soil | TKLITLVQRDGRYRFAGQDRVRIERAAPDLEDRVALVEDFLGKLT |
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