3300000235: Groundwater microbial communities from subsurface biofilms in sulfidic aquifier in Frasassi Gorge, Italy, sample from two redox zones- PC08_3

Overview

Basic Information

• IMG/M Taxon OID: 3300000235
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063446 | Gp0053359 | Ga0026215
• Sample Name: Groundwater microbial communities from subsurface biofilms in sulfidic aquifier in Frasassi Gorge, Italy, sample from two redox zones- PC08_3
• Sequencing Status: Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 252007248
• Sequencing Scaffolds: 19
• Novel Protein Genes: 20
• Associated Families: 17

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria → Neisseria meningitidis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Chroococcales → Aphanothecaceae → Crocosphaera → Crocosphaera watsonii	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage	6
Not Available	8
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → Anaerolinea → Anaerolinea thermophila	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Groundwater Microbial Communities From Subsurface Biofilms In Sulfidic Aquifier In Frasassi Gorge, Italy
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Groundwater → Cave Water → Groundwater → Groundwater Microbial Communities From Subsurface Biofilms In Sulfidic Aquifier In Frasassi Gorge, Italy

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater biome → aquifer → biofilm material
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Pozzo dei Cristalli, Frasassi Caves, Italy
• Coordinates
  • Lat. (^o): 43.383333
  • Long. (^o): 12.95
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002045	Metagenome / Metatranscriptome	599	Y
F002525	Metagenome / Metatranscriptome	552	Y
F004408	Metagenome / Metatranscriptome	439	Y
F006142	Metagenome / Metatranscriptome	380	Y
F008248	Metagenome / Metatranscriptome	336	Y
F016728	Metagenome / Metatranscriptome	245	Y
F016970	Metagenome / Metatranscriptome	243	Y
F017303	Metagenome / Metatranscriptome	241	Y
F025295	Metagenome / Metatranscriptome	202	Y
F026554	Metagenome / Metatranscriptome	197	Y
F026883	Metagenome / Metatranscriptome	196	Y
F030082	Metagenome / Metatranscriptome	186	Y
F031400	Metagenome / Metatranscriptome	182	Y
F044511	Metagenome / Metatranscriptome	154	Y
F061835	Metagenome / Metatranscriptome	131	Y
F073558	Metagenome / Metatranscriptome	120	Y
F096738	Metagenome / Metatranscriptome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
TB_PC08_3DRAFT_1015255	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria → Neisseria meningitidis	2529
TB_PC08_3DRAFT_1015527	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Chroococcales → Aphanothecaceae → Crocosphaera → Crocosphaera watsonii	2484
TB_PC08_3DRAFT_1019398	All Organisms → Viruses → Predicted Viral	2036
TB_PC08_3DRAFT_1027080	All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage	1496
TB_PC08_3DRAFT_1027538	All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage	1473
TB_PC08_3DRAFT_1029536	Not Available	1380
TB_PC08_3DRAFT_1031454	Not Available	1300
TB_PC08_3DRAFT_1034268	Not Available	1202
TB_PC08_3DRAFT_1035372	All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage	1168
TB_PC08_3DRAFT_1047065	All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage	908
TB_PC08_3DRAFT_1048576	All Organisms → cellular organisms → Bacteria	884
TB_PC08_3DRAFT_1049502	Not Available	870
TB_PC08_3DRAFT_1053352	Not Available	816
TB_PC08_3DRAFT_1056312	All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage	779
TB_PC08_3DRAFT_1065286	Not Available	691
TB_PC08_3DRAFT_1072951	All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage	634
TB_PC08_3DRAFT_1079689	Not Available	592
TB_PC08_3DRAFT_1089262	Not Available	544
TB_PC08_3DRAFT_1097301	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → Anaerolinea → Anaerolinea thermophila	510

Sequences

Scaffold ID	Protein ID	Family	Sequence
TB_PC08_3DRAFT_1015255	TB_PC08_3DRAFT_10152551	F002525	GVDSAWEQEKLEARKMLENAAREASHTSGARFISLDF*
TB_PC08_3DRAFT_1015527	TB_PC08_3DRAFT_10155274	F016728	RHCQPTVCVTCVWAGVDNAXEQEKLEARKMLENAAESHTSGARFVRPRS*
TB_PC08_3DRAFT_1019398	TB_PC08_3DRAFT_10193985	F031400	MKLYKKYSLFLESKNNVKTKKNIVRDLCVSMLLINNTFLDNILDRGLAARYQENSQVFLTDLKNLLIAKNRLKIGKFEGNKCIEDDNLSLVNSVFDGVKFDIEKDWNELVNARTISRNIIDKLVPNKKLESDDIKSIYWNLDLDDDHQEDIVVELRDGQQFSFFLNKNLSSSKSTSFNTFAEDLIGQDLDLLFTEEYLVKWDKLTQEWIRILYDNANKDIQFHIEKFIDPKRIDSIGYFDYFDIRHGDLKYKHLGEFFKVFDKNILKFSELLLEIWKNRDNCFMD
TB_PC08_3DRAFT_1023204	TB_PC08_3DRAFT_10232041	F002525	VWAGVDNAWEQEKLEAWKMLENAAESHTSGARFVGQPAYQNDG*
TB_PC08_3DRAFT_1027080	TB_PC08_3DRAFT_10270803	F016970	GNAESIFTIVEQVEEGHITLVRDSWFLLTENSIEKTLLENHVKDMETLQSLRTLETAMKYASVTENRINFRISEYMTIGLGVGKKTLFINDDELNGETTLESLFNSPIVPIVNKNFYPILLETSKNLDKFVELDVVKRVNNLINPYLEVFAFNYKNNTFVYRCDERYGNSFFKYESALELVNEVRNELNCDLTYFYENKLGKELIVKRKLEDKEREITLKLEDIHFNIDKIKGSIQMIGESETLTTALKNLEKRSTNLNAELNAVKELQYKERVIG*
TB_PC08_3DRAFT_1027538	TB_PC08_3DRAFT_10275382	F002045	MVNKEDSRMNFFCVYCKTRKKFDKFIKVNAIKNKYIIDINKIMTEEEVDFNDDKTYLKIIIFNKIQQAIDKKKDIYYIPDFDNEFSIEKLLNLKKILGENNFNVLIFYNEFRRNPEILDDVFSNLSKFSNSQIIRDY*
TB_PC08_3DRAFT_1029536	TB_PC08_3DRAFT_10295362	F017303	MSIIVKNSQLTNDAIAALNTLIELDINAVTAFKLTRIIKELSSIVDDKLKMEKKIFDKWVEKDENGEPVIPKKSDGTLVEGAVNITNVEEFTKEMSELMEIENEIPFDTIQFEDLGLTTAKVKDLIKVDFLFS*
TB_PC08_3DRAFT_1031454	TB_PC08_3DRAFT_10314541	F006142	MKRKRSKYLITELSEFNLQRMNDDSVQASTHVDDPALSTNAFDRAQDAIRQSMVRINDIMYNTKGTNAYRSLRSKLALEEQDIKSMKILRIIKSETLGYDIYLTFVIGEEEYWGKLEDVLGQNPELTSEVFKDADLYQPKEWIIKITGLITKTIKTWLKPEPGKYKLINNEIICYSVETGKQLKMENGIIIDV
TB_PC08_3DRAFT_1034268	TB_PC08_3DRAFT_10342682	F026554	MLIQIIMTLSISFYDIVFYFIYKIMKLEVNEIYHQYIIRVVIFALFTFKRQIRQPNVYKQSVYSFVEKRLPWKINLLIDTGEKLSKEDERDLILEELLNDKKVDFLKYVCVIFTTPLKQDCMMEIDLTDEKKYEHFLYS*
TB_PC08_3DRAFT_1035372	TB_PC08_3DRAFT_10353722	F008248	MKNLNLKLELFNFKKDLALDQEEIFVIVESHMNACNQHSEKTIITSLNERLKPYTYDKSVKSLLENLNDDMANYELLYELKNLYSVLNSKNQGELYRQPINVLLQTINLETDQDRMSKVLNELAVYDWVPEIKLFVHNLTKSP
TB_PC08_3DRAFT_1047065	TB_PC08_3DRAFT_10470651	F026883	LKHILKNKLLLQKHFHTQEVSMDEWPYWMFEENINIVNEIIEDEENQRKKDEESQSTSIPDTSSMMKSAQNMTSNMQMPKF*
TB_PC08_3DRAFT_1048576	TB_PC08_3DRAFT_10485763	F044511	PDAGDSGVIPSLFLRLSIFPVGRRSAARPSAGNANRWALGKLIQKEQ*
TB_PC08_3DRAFT_1049502	TB_PC08_3DRAFT_10495021	F044511	MRPTKRAPDAGDSAQISSSFLRLSILPGGRRPAARPSAGNANR
TB_PC08_3DRAFT_1053352	TB_PC08_3DRAFT_10533521	F096738	MKIAIYDMDGTIVCSLHRYKTINGKIDLDYWRANEYKAMNDSLLPLADKYKEDLADKN
TB_PC08_3DRAFT_1056312	TB_PC08_3DRAFT_10563121	F030082	KHKIEGKHSLKYDSIFKGKKEDPVDEDDTTDLFSGYYRETIEVDRGSNYYHESIDNEMYIRTKLVKERVYAILGEHTSINFLNNRRKPSRVDFNNYYSLLKNNLKDESFTNVELFNELSVYFSDNLFNMFKLLDNKWRNIIINELQEHIGKNSNSKDITNRNIYEGTEVEFFLVDQVTEEEKIITGVVIETHYDENYFKIDSYENIYNVNIKQITKILNNTKFKYNLNKLNNIDFL*
TB_PC08_3DRAFT_1065286	TB_PC08_3DRAFT_10652862	F061835	MRKIEKFNNFNLIKEEASPRLPKSEDYWLKKGKIGKKVALYIHDDMDGMFSGIEMKKYLLNAGFTIEKYGILNYSEGWKYTTLDPKLINVVLDFANMPGDERDDMIDYYLDHHGIFTPEELEKYKSSPVQKKKTGSAYESICQSLGVPQDSLTLDVIDMIDSAKY
TB_PC08_3DRAFT_1072951	TB_PC08_3DRAFT_10729511	F004408	LSDEEQDTVKLHINESSYFTQKEVLTLISEALSTKNETLEERVIRLMPNNIKSIWGTLNESVKKSILSQARLYPEEVLRTENQIEHFWGTRNIKTNETVTKKLVAHEGLIQEDKLSDNEVSMIMERFRRV*
TB_PC08_3DRAFT_1079689	TB_PC08_3DRAFT_10796892	F025295	MGAKSCNFNSPDEIMVTGAGKATELLRRRKVLIPEKLKFFTRKSNLQKLI*
TB_PC08_3DRAFT_1089262	TB_PC08_3DRAFT_10892621	F073558	QVLDKKTELVNKIKEHQEEVTTESTSKKEDNSKNTIMFVILSSLIELIILAGVFFNEYYKFRSYNEFRNKLEKDPGYQKWLLYDQILNVIYTDDIKMNQKLPSNRAIIDMCKANGIVVLPKDLTDFLKVIANIGIIKSSGSSKYINKTKDLAEEYLRKQYNIE*
TB_PC08_3DRAFT_1097301	TB_PC08_3DRAFT_10973013	F002525	VWAGVDNAWEQEKLEARKMLENGADSHTSGARFVGRFLPTRLFCY*