3300000232: Groundwater microbial communities from subsurface biofilms in sulfidic aquifier in Frasassi Gorge, Italy, sample from two redox zones- PC08_64

Overview

Basic Information

• IMG/M Taxon OID: 3300000232
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063446 | Gp0053361 | Ga0026479
• Sample Name: Groundwater microbial communities from subsurface biofilms in sulfidic aquifier in Frasassi Gorge, Italy, sample from two redox zones- PC08_64
• Sequencing Status: Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 270071044
• Sequencing Scaffolds: 13
• Novel Protein Genes: 15
• Associated Families: 14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	5
Not Available	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Rhabditina → Rhabditomorpha → Rhabditoidea → Rhabditidae → Peloderinae → Caenorhabditis → Caenorhabditis elegans	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Desulfobacca → Desulfobacca acetoxidans	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Groundwater Microbial Communities From Subsurface Biofilms In Sulfidic Aquifier In Frasassi Gorge, Italy
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Groundwater → Cave Water → Groundwater → Groundwater Microbial Communities From Subsurface Biofilms In Sulfidic Aquifier In Frasassi Gorge, Italy

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater biome → aquifer → biofilm material
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Pozzo dei Cristalli, Frasassi Caves, Italy
• Coordinates
  • Lat. (^o): 43.383333
  • Long. (^o): 12.95
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002525	Metagenome / Metatranscriptome	552	Y
F016728	Metagenome / Metatranscriptome	245	Y
F028724	Metagenome	190	Y
F030143	Metagenome / Metatranscriptome	186	Y
F034814	Metagenome	173	Y
F036294	Metagenome / Metatranscriptome	170	Y
F050966	Metagenome / Metatranscriptome	144	Y
F053932	Metagenome / Metatranscriptome	140	Y
F056321	Metagenome / Metatranscriptome	137	N
F061534	Metagenome / Metatranscriptome	131	N
F081864	Metagenome	114	Y
F086482	Metagenome / Metatranscriptome	110	Y
F090625	Metagenome / Metatranscriptome	108	Y
F103562	Metagenome / Metatranscriptome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
TB_PC08_64DRAFT_1006214	All Organisms → cellular organisms → Bacteria	4842
TB_PC08_64DRAFT_1009311	All Organisms → cellular organisms → Bacteria	3667
TB_PC08_64DRAFT_1011650	All Organisms → cellular organisms → Bacteria	3122
TB_PC08_64DRAFT_1012156	All Organisms → cellular organisms → Bacteria	3027
TB_PC08_64DRAFT_1014991	Not Available	2595
TB_PC08_64DRAFT_1019978	Not Available	2079
TB_PC08_64DRAFT_1033721	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1355
TB_PC08_64DRAFT_1034302	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1336
TB_PC08_64DRAFT_1049824	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Rhabditina → Rhabditomorpha → Rhabditoidea → Rhabditidae → Peloderinae → Caenorhabditis → Caenorhabditis elegans	958
TB_PC08_64DRAFT_1069849	Not Available	716
TB_PC08_64DRAFT_1088053	All Organisms → cellular organisms → Bacteria	598
TB_PC08_64DRAFT_1101066	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Desulfobacca → Desulfobacca acetoxidans	539
TB_PC08_64DRAFT_1110812	Not Available	505

Sequences

Scaffold ID	Protein ID	Family	Sequence
TB_PC08_64DRAFT_1006214	TB_PC08_64DRAFT_10062143	F056321	MPQLEVPGPPPIIYVHMEFYRGIKAIAQFLGVHERTAQAFLYDGKIPGKKDGTGTWVLTNLDYFTSLRR*
TB_PC08_64DRAFT_1009311	TB_PC08_64DRAFT_10093112	F081864	MEADTMQFQASNGQQPRGFGRWGFQIGSETCFIVGKYSVAKQDALRVAKKRGVERVVVLPDKKLAPQGGNPERPENISQEQINNIKTRFMAQAESRTFGKGTKGERVRTVIPTNGLKAAAIMAIFQVDSKRTAHCIAKRGFYIVDYKKQSMCPGEIDIEEAYRISKWWVYKKMGGCLPHWADPEDMVQEAVTRLIERGGDPRMVGESYKFFMVQTAIHRYLRRNRKHEHEDEEKIEAPGSRWGTWDRSYRATETMCRVIEARGAYPMERAA*
TB_PC08_64DRAFT_1009311	TB_PC08_64DRAFT_10093113	F034814	MTSLAAEKTETLPGLHSCFTCADNLGCNLEPRCEFMDGCIKWRCRVCRAPWWTVGYDHEACNATGVPNGVTYHDGTHMAPLPEDSGHYFLHGGYCRVHKSWRCGLLR*
TB_PC08_64DRAFT_1011650	TB_PC08_64DRAFT_10116505	F086482	MPVEDLPTYRRTSIDLYLRLPDTPRRLSRYDLRLLEQLWLRQIPLSTIETAF
TB_PC08_64DRAFT_1012156	TB_PC08_64DRAFT_10121562	F090625	MLRKFASTLLALTGLLIGLGALGHSFVGRKALDAGLASIQLDAHTGKLIYLVWYFCGGCMLVFGMLVIWSAWRAWHGENRALFASGLIGVFYLLTGALALAYMREPFWGVFMVLGGLSLILSATLGLQGKPAARPLATPQ*
TB_PC08_64DRAFT_1014991	TB_PC08_64DRAFT_10149914	F036294	VIVMDRGSSEEAIVGVKLVADDDAVRYLRIKLLESDREVGAEGRNM*
TB_PC08_64DRAFT_1019978	TB_PC08_64DRAFT_10199783	F050966	MSGSRWQGMKTRHGDGTEALSEEMESNGSATPKSRRHPLTLPPDVWDSARFTSIFPWASTRAG
TB_PC08_64DRAFT_1033721	TB_PC08_64DRAFT_10337212	F061534	MNDYGRMPPELMERVRGMFLTLFGGKEKLDCWLTRIADELADAGNPANRPIKLDPSLIPEEFQSVMHRPKEVVDLILEKLDSLAVFGYTAKVIKQGEVSLAIVSDQASGHVIEEAAGPDPDNLIHSLVEKYGHNLEVVKE*
TB_PC08_64DRAFT_1034302	TB_PC08_64DRAFT_10343023	F053932	MNRWLPHVLFPRPGWFILHAIIIVLIFCLGYVVKF*
TB_PC08_64DRAFT_1049824	TB_PC08_64DRAFT_10498241	F103562	VAKEPSKDAFERLAGLFKKGTAHQDYPVSDVFEGPLASTSRAYDVEGIPLEQHVSVYHSGRSDEVLPKEPEVKHAEPEGESFVDKLTGLFKRGTAHQDYPTTEVYEGPLASTSRAYEVDGIPLEQHVTVYHSGRSDEVAPKEEPAPKEPSTDAFARLAGLFKKGTAHQDYPTSEVFEGPLATTSRAYDVEGIPLEQHVSVYHSGRSDEVLPKEAEVKHVEPEREPGESFVDRLTGLFKRGAAHQDYPTSEVYEGPLASTSRAYEVEGIPLEQHVTAYHSGRSDEVLPREEPVAKEPSKDAFERLAGLFKKGTAHQDYPV
TB_PC08_64DRAFT_1052894	TB_PC08_64DRAFT_10528944	F016728	WAGVDNAWEQXKLEARKMPVNRADSHTSGARFVGTLLLWKTHLPL*
TB_PC08_64DRAFT_1069849	TB_PC08_64DRAFT_10698492	F028724	LDNGSDSEFTVKTKNAPFFMNFPNIYKLWQISLI*
TB_PC08_64DRAFT_1088053	TB_PC08_64DRAFT_10880533	F002525	DNAWEQEKLDARKILENAAESHTSGARFVSQPAC*
TB_PC08_64DRAFT_1101066	TB_PC08_64DRAFT_11010661	F030143	MVKGLIAASQVRSRHRLMEQGVSMAVAVTGALDLAFNRGKGKVLERWLEEVSGENQGEPSKKRPKMSDRAFSFFTGMPRQGSDRPARKK*
TB_PC08_64DRAFT_1110812	TB_PC08_64DRAFT_11108122	F028724	QNRNSKIANFKCDYLDNDNDSEFTVKTKNAPFFMNFSNIYKLWQISLI*