3300000134: Marine microbial communities from chronically polluted sediments in the Baltic Sea - site KBA sample SWE 07_21m

Overview

Basic Information

• IMG/M Taxon OID: 3300000134
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063447 | Gp0053439 | Ga0026116
• Sample Name: Marine microbial communities from chronically polluted sediments in the Baltic Sea - site KBA sample SWE 07_21m
• Sequencing Status: Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 98592268
• Sequencing Scaffolds: 16
• Novel Protein Genes: 19
• Associated Families: 19

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	5
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Anthozoa → Hexacorallia → Actiniaria	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria	3
All Organisms → Viruses	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfovibrionales → Desulfovibrionaceae → Oleidesulfovibrio → Oleidesulfovibrio alaskensis	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From Chronically Polluted Sediments In Four Geographic Locations
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Wetlands → Sediment → Marine → Marine Microbial Communities From Chronically Polluted Sediments In Four Geographic Locations

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine benthic biome → marine benthic feature → marine sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Sediment (saline)

Location Information

• Location: KBA site, Vaertahamnen, Baltic Sea, Sweden
• Coordinates
  • Lat. (^o): 59.363333
  • Long. (^o): 18.119167
  • Alt. (m): N/A
  • Depth (m): 21

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013428	Metagenome / Metatranscriptome	271	Y
F015324	Metagenome / Metatranscriptome	255	Y
F018541	Metagenome / Metatranscriptome	234	Y
F029478	Metagenome / Metatranscriptome	188	Y
F030099	Metagenome	186	N
F035835	Metagenome / Metatranscriptome	171	Y
F040160	Metagenome	162	N
F041807	Metagenome / Metatranscriptome	159	N
F045540	Metagenome	152	Y
F049642	Metagenome / Metatranscriptome	146	N
F060457	Metagenome / Metatranscriptome	133	Y
F074886	Metagenome / Metatranscriptome	119	N
F082378	Metagenome	113	Y
F082695	Metagenome / Metatranscriptome	113	N
F098776	Metagenome / Metatranscriptome	103	Y
F100438	Metagenome / Metatranscriptome	102	Y
F101438	Metagenome / Metatranscriptome	102	N
F104469	Metagenome / Metatranscriptome	100	Y
F105200	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
BS_KBA_SWE07_21mDRAFT_c1000103	Not Available	10682
BS_KBA_SWE07_21mDRAFT_c1000108	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	10578
BS_KBA_SWE07_21mDRAFT_c1001006	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Anthozoa → Hexacorallia → Actiniaria	3617
BS_KBA_SWE07_21mDRAFT_c1001215	All Organisms → Viruses → Predicted Viral	3305
BS_KBA_SWE07_21mDRAFT_c1001771	All Organisms → cellular organisms → Bacteria	2761
BS_KBA_SWE07_21mDRAFT_c1003445	All Organisms → cellular organisms → Bacteria	1967
BS_KBA_SWE07_21mDRAFT_c1003596	All Organisms → Viruses	1929
BS_KBA_SWE07_21mDRAFT_c1004525	All Organisms → cellular organisms → Bacteria → Proteobacteria	1721
BS_KBA_SWE07_21mDRAFT_c1008481	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfovibrionales → Desulfovibrionaceae → Oleidesulfovibrio → Oleidesulfovibrio alaskensis	1222
BS_KBA_SWE07_21mDRAFT_c1019963	Not Available	746
BS_KBA_SWE07_21mDRAFT_c1024494	All Organisms → cellular organisms → Bacteria	667
BS_KBA_SWE07_21mDRAFT_c1027979	All Organisms → cellular organisms → Bacteria → Proteobacteria	621
BS_KBA_SWE07_21mDRAFT_c1030452	Not Available	593
BS_KBA_SWE07_21mDRAFT_c1032998	Not Available	569
BS_KBA_SWE07_21mDRAFT_c1037135	Not Available	534
BS_KBA_SWE07_21mDRAFT_c1039713	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	516

Sequences

Scaffold ID	Protein ID	Family	Sequence
BS_KBA_SWE07_21mDRAFT_c1000103	BS_KBA_SWE07_21mDRAFT_10001032	F074886	MPKIPRNFIQEFPYGISIEDSLNKGMKYLNADPNYITTWKDIIFTPVENLIHHQVFVFSEGKDMLIGFLVSQQATFLPDFISATIQLFGGVYTIDDTTNSIFIQEFIYYSILFLIGLGSARLAISMWLIINPYTMPWFLLLTATEWFMDSFAGIFPAVFGIEMTGSIVLGLLGSLAVYVKNLVLTMPYLPSEAIKQTIGIHEVYTFGGIPILWKIFSVPDKLREEWYKSTPYLIENLIKYYGDEGVEFVPSRILKEFYNNTPVADYTYHFAFVFSEFKSTFYQLEIHNNLLAFVFNPNIFESFNSHQFYNISNIL*
BS_KBA_SWE07_21mDRAFT_c1000108	BS_KBA_SWE07_21mDRAFT_100010810	F049642	VKIIVVISGFTQKNYQSTGSKQLWRELRLLKDLCAGEDALIQLKEWDTDWKRYARYINSLEPSEVLICCYXWGGGHGMPQLSKRLQCDVSVVACDPVYHSPTILGRWWALFDRKIKLDKNVTVVGWVSQRGGHLDGDKLVGGKSICKELTYNYSHTEIDNSPEYHQMAVLAATEYLTKI*
BS_KBA_SWE07_21mDRAFT_c1001006	BS_KBA_SWE07_21mDRAFT_10010063	F082695	LFFVLRSFESETGDETDVVKWAHKLMNKSVANRTITKQEAMCELGQLPMVICSEGIETVSITGSTXCSNETSTILSQYKKRPDTQEHLSLHEFFHTKKNKRLPATRSQREIVPHYVGGSGQPVYPLTKQSISYARSEILKHMPWSQKNPLPNDCDWVALFEDFLNDARCPHSVTIGYERAKLRHELRKKGIEEACQPDTEHSNPTDDLDDDEIGDVIAISESMGYTTDEMDNLEKSGFFIGKDYEWWKRIHTVSCSFMIEMKSSPNEIWIFQNF*
BS_KBA_SWE07_21mDRAFT_c1001215	BS_KBA_SWE07_21mDRAFT_10012153	F030099	MTESEHETCTTIAEQLGKPYTPMAIGKLRASVCLPADLDGKYILPTGVLKIMAQIKGEIDIIEEAAPEIVTVKVIHHQTGNTRVIFAEDPDTRRKIRVSVPAKWKDIINMAGKRLKVNKVYSDGVAYYRYPAK*
BS_KBA_SWE07_21mDRAFT_c1001771	BS_KBA_SWE07_21mDRAFT_10017713	F045540	MLRYIFTLATLLDSKSNCKKHYSPEIVISDLFDENLNEIDFIKSLSELELIYGFEISEELYDRKDLTLGEFAEELLQLPIISDELYLEFFDIKMESMKLTKRYIELEAKTDEDSLREMHMINEKFEELTDRLNVVLGNILVN*
BS_KBA_SWE07_21mDRAFT_c1003445	BS_KBA_SWE07_21mDRAFT_10034452	F018541	MYSPKMRSFWVDFPVTDDQYAKLDLRWRRRDNFYEIKNPPPAGIRVRSFCTFGGEDYKIISLEVRGDIDAYHEVIKVMGSWIVDSLGAY*
BS_KBA_SWE07_21mDRAFT_c1003596	BS_KBA_SWE07_21mDRAFT_10035963	F035835	MKTDKTTGITEGAMRTLLRSALRPIWRRCSRKTFINSVRYQATNPKTGRQWNVIDCIDCKRVMGVSEKERRPLKNGRLSKKPRSVYEVHHISGVTSLGDIRETLGEHFHSLIYGKMAILCVACHAKETAEQTIERNKKKEFTT*
BS_KBA_SWE07_21mDRAFT_c1004525	BS_KBA_SWE07_21mDRAFT_10045253	F101438	MSDRTVIRQGEIMLRQIFSASLFVWYSTSAWADGPVDKPVSPSARFEQILDFRNNASLVRQPQQVLDLADAMTDPEFLVAAMMMSANPEIWLKALERAGAPGVPKNLSQMATPEMLADWFYSSIDPQFQQAIVTRMLDPKKPQRWMQAMSNPRFYMHALAIMNPATPMQWMKVTADGRMIQPMQAWFDPKTYLNWMRLPMPS
BS_KBA_SWE07_21mDRAFT_c1008481	BS_KBA_SWE07_21mDRAFT_10084812	F060457	MPKDNADPRTSSSDIGIFLSTIFHIASIACVPFLVNGTVNGNIYTCGLLFVWIIYYSFRLAKSRKLLGLAFFGMTLSAMVLGIYNFGLMSQYKNAKLYLGEEKEFCRETTYETLLLKYETEKSMISASFRICLDKQHVQPETCIKEVNQRTSLNEVMFGNRLLRLSNCANSLTTKEKSLDRLKNKPWVKFWLSLL*
BS_KBA_SWE07_21mDRAFT_c1009474	BS_KBA_SWE07_21mDRAFT_10094741	F029478	IRVAAALLLSQVLSGCVSLRIEKMQEGVDVAPPPVEFIQKKTLLEEVLAGYGAPTDLVDMNGDFALHYRRALYRGLRVSMGIPLKSVLLPNPSMEAKGNLLRYDTAVFIFTADGVLKDMKYEKGTSRSLWEDYWR*
BS_KBA_SWE07_21mDRAFT_c1015327	BS_KBA_SWE07_21mDRAFT_10153271	F104469	KSLGNHDQALPDADDNASFVFDKDDQSISSHGSVVVNSCCDTSFDGTTKIPTDENDYACFTTSQKCVTSLMYLLDDMECPDYAFQSIMEWARNCFEAGFDFNPRSRTRLANLKWMYNSLHNSEQLLPSVVTIQLPDPLPTVKSMDVICYDFVPQLLSILQNKEMMSVNNLVLDPMNPLSMYKPSDNRLGESLSGSVYQSMYQRLVTNPSKQFLCPLICYTDGTQVDALSRFSVEPFLFTPAVLSHAARCKAEAWRPFGYVQHLRCHETKLDGGAKARNYHAQLQAMLQGL
BS_KBA_SWE07_21mDRAFT_c1019963	BS_KBA_SWE07_21mDRAFT_10199632	F040160	KVKSLCAAISSHEDWNKLQAYLLLNVNPPEGVTTLIHAIKTIEAIGTEEQGAFKKTKAVGKYKEPTDSTIDPDLDEI*
BS_KBA_SWE07_21mDRAFT_c1021914	BS_KBA_SWE07_21mDRAFT_10219142	F105200	VPDTFDRELEQLLQYSETPQPEAFVMDVMRGVRREQRTRKIILWAFGLIGALFGLSGAXMLXGPVSGLFTFSLALPAMETMQVTLFIVGAAAFYLWFMNDDFSLGN*
BS_KBA_SWE07_21mDRAFT_c1024494	BS_KBA_SWE07_21mDRAFT_10244941	F041807	MARLELTLNFPKSFHIKTFNVKSEKKLSPLAKLILQNVQFKHFYYVRDD
BS_KBA_SWE07_21mDRAFT_c1027979	BS_KBA_SWE07_21mDRAFT_10279792	F013428	VSGNDVANGPTDQQRRGIRRTTILLVLVALAIYVAFIASGVMKAQH*
BS_KBA_SWE07_21mDRAFT_c1030452	BS_KBA_SWE07_21mDRAFT_10304522	F015324	MALVNQVQKRVKMPKWDIVKFQILTHCYVNHITMSDSDLNCLTLLSFNQPIELTHFCYDASAED
BS_KBA_SWE07_21mDRAFT_c1032998	BS_KBA_SWE07_21mDRAFT_10329981	F082378	LKEQERKRFTDVQIQMQNLAGETGEYLIEFSSEDPDNAQTIGTTTTFLGGEMLAPSTVGEAETANIRARLGGIRGYTGTVILTRTEGSPKIHSTRISASITNRQIISQK*
BS_KBA_SWE07_21mDRAFT_c1037135	BS_KBA_SWE07_21mDRAFT_10371352	F098776	MSATHFDFTTLKFFLFRNQSNRLSIPPCHILILFWCALVILYDVTGLS
BS_KBA_SWE07_21mDRAFT_c1039713	BS_KBA_SWE07_21mDRAFT_10397131	F100438	QAKSLKLEKIMNEKMSKRRIQITDLQKQEIEEKQERRLLIRLHIFYLILLINL*