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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 2140918005 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0046158 | Gp0051718 | Ga0026260 |
| Sample Name | Marine sediment microbial communities from Arctic Ocean, off the coast from Alaska - sample from high methane PC12-225-485cm |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 310086717 |
| Sequencing Scaffolds | 44 |
| Novel Protein Genes | 50 |
| Associated Families | 40 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → Viruses → Predicted Viral | 4 |
| Not Available | 30 |
| All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. | 1 |
| All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon | 4 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium mongolense → Rhizobium mongolense USDA 1844 | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → unclassified Firmicutes sensu stricto → Firmicutes bacterium ADurb.Bin419 | 1 |
| All Organisms → Viruses | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium | 1 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Coastal Water And Sediment Microbial Communities From Arctic Ocean, Off The Coast From Alaska |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Coastal Water And Sediment → Coastal Water And Sediment Microbial Communities From Arctic Ocean, Off The Coast From Alaska |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine benthic biome → marine benthic feature → marine sediment |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Sediment (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Arctic Ocean | |||||||
| Coordinates | Lat. (o) | 74.0678 | Long. (o) | -145.54687 | Alt. (m) | N/A | Depth (m) | 3 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000918 | Metagenome / Metatranscriptome | 834 | Y |
| F003058 | Metagenome / Metatranscriptome | 510 | Y |
| F003647 | Metagenome / Metatranscriptome | 475 | Y |
| F004192 | Metagenome / Metatranscriptome | 449 | Y |
| F005129 | Metagenome / Metatranscriptome | 411 | Y |
| F005243 | Metagenome / Metatranscriptome | 407 | Y |
| F005817 | Metagenome / Metatranscriptome | 389 | N |
| F008577 | Metagenome / Metatranscriptome | 331 | Y |
| F008695 | Metagenome / Metatranscriptome | 329 | Y |
| F009040 | Metagenome / Metatranscriptome | 324 | Y |
| F010928 | Metagenome / Metatranscriptome | 297 | N |
| F012505 | Metagenome / Metatranscriptome | 280 | Y |
| F015149 | Metagenome / Metatranscriptome | 257 | Y |
| F015230 | Metagenome | 256 | N |
| F016205 | Metagenome / Metatranscriptome | 249 | Y |
| F019836 | Metagenome / Metatranscriptome | 227 | Y |
| F022015 | Metagenome / Metatranscriptome | 216 | Y |
| F023446 | Metagenome / Metatranscriptome | 210 | Y |
| F023593 | Metagenome / Metatranscriptome | 209 | N |
| F026402 | Metagenome / Metatranscriptome | 198 | Y |
| F033501 | Metagenome / Metatranscriptome | 177 | Y |
| F033809 | Metagenome / Metatranscriptome | 176 | N |
| F036311 | Metagenome / Metatranscriptome | 170 | N |
| F038157 | Metagenome / Metatranscriptome | 166 | Y |
| F043412 | Metagenome / Metatranscriptome | 156 | Y |
| F049760 | Metagenome | 146 | Y |
| F051049 | Metagenome / Metatranscriptome | 144 | Y |
| F054910 | Metagenome / Metatranscriptome | 139 | N |
| F060921 | Metagenome | 132 | N |
| F062159 | Metagenome / Metatranscriptome | 131 | Y |
| F071637 | Metagenome | 122 | Y |
| F078926 | Metagenome | 116 | Y |
| F080238 | Metagenome / Metatranscriptome | 115 | Y |
| F082713 | Metagenome / Metatranscriptome | 113 | N |
| F085735 | Metagenome / Metatranscriptome | 111 | Y |
| F092857 | Metagenome / Metatranscriptome | 107 | Y |
| F095487 | Metagenome | 105 | N |
| F099974 | Metagenome / Metatranscriptome | 103 | Y |
| F103255 | Metagenome / Metatranscriptome | 101 | N |
| F103885 | Metagenome / Metatranscriptome | 101 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| contig00034 | All Organisms → Viruses → Predicted Viral | 2789 | Open in IMG/M |
| contig00227 | Not Available | 1365 | Open in IMG/M |
| contig00254 | Not Available | 1311 | Open in IMG/M |
| contig00382 | Not Available | 1153 | Open in IMG/M |
| contig00383 | All Organisms → Viruses → Predicted Viral | 1152 | Open in IMG/M |
| contig00388 | All Organisms → Viruses → Predicted Viral | 1147 | Open in IMG/M |
| contig00409 | All Organisms → Viruses → Predicted Viral | 1126 | Open in IMG/M |
| contig00552 | Not Available | 1008 | Open in IMG/M |
| contig00601 | All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. | 965 | Open in IMG/M |
| contig00615 | Not Available | 963 | Open in IMG/M |
| contig00650 | Not Available | 946 | Open in IMG/M |
| contig00672 | Not Available | 931 | Open in IMG/M |
| contig00822 | All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon | 873 | Open in IMG/M |
| contig00856 | Not Available | 860 | Open in IMG/M |
| contig00864 | All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon | 854 | Open in IMG/M |
| contig00927 | Not Available | 836 | Open in IMG/M |
| contig00976 | Not Available | 820 | Open in IMG/M |
| contig01046 | Not Available | 799 | Open in IMG/M |
| contig01282 | Not Available | 744 | Open in IMG/M |
| contig01292 | Not Available | 745 | Open in IMG/M |
| contig01545 | Not Available | 694 | Open in IMG/M |
| contig01741 | Not Available | 658 | Open in IMG/M |
| contig01774 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium mongolense → Rhizobium mongolense USDA 1844 | 662 | Open in IMG/M |
| contig01825 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → unclassified Firmicutes sensu stricto → Firmicutes bacterium ADurb.Bin419 | 657 | Open in IMG/M |
| contig02036 | Not Available | 626 | Open in IMG/M |
| contig02060 | Not Available | 617 | Open in IMG/M |
| contig02392 | All Organisms → Viruses | 582 | Open in IMG/M |
| contig02442 | Not Available | 579 | Open in IMG/M |
| contig02541 | Not Available | 572 | Open in IMG/M |
| contig02700 | Not Available | 556 | Open in IMG/M |
| contig02947 | Not Available | 539 | Open in IMG/M |
| contig03104 | All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon | 530 | Open in IMG/M |
| contig03116 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium | 524 | Open in IMG/M |
| GOZG4CW03F2QGA | Not Available | 519 | Open in IMG/M |
| GOZG4CW03FTYNX | Not Available | 525 | Open in IMG/M |
| GOZG4CW03FYAFG | Not Available | 538 | Open in IMG/M |
| GOZG4CW03FZZ6C | Not Available | 512 | Open in IMG/M |
| GOZG4CW03GKHFZ | Not Available | 500 | Open in IMG/M |
| GOZG4CW03GKM4Z | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 534 | Open in IMG/M |
| GOZG4CW03GS1MU | Not Available | 534 | Open in IMG/M |
| GOZG4CW03GVWJU | Not Available | 536 | Open in IMG/M |
| GOZG4CW03GWOK4 | Not Available | 511 | Open in IMG/M |
| GQ8TDHF02IOF0D | All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon | 508 | Open in IMG/M |
| GQ8TDHF02IZSI6 | Not Available | 509 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| contig00034 | ASHM485C_01739090 | F004192 | MKQDFNEWMASIGNIYYADNNLMSQAFEKLNNNEEVQCT |
| contig00227 | ASHM485C_00970230 | F033501 | INEMDYLAQVHFAEFGYDTCSHSEKQAVIKLLLHNTK |
| contig00254 | ASHM485C_01167310 | F022015 | MYKNYITWEQSFKEVNESILRHEIICAIASEVAGESVNNLCGFTEDQKESVWCDYYNTTELCE |
| contig00382 | ASHM485C_02119980 | F010928 | METQEFMGSGQLVDRLTAQVRDKGFAMALLKKRGDMNPDGSLTAKGEEANAMNSGQRATKRASEKSGK |
| contig00382 | ASHM485C_02119990 | F000918 | MYKTNNQCWNEVSNSIKESNIRTKICIEMFGQENLIGLSDEQRELFWQSV |
| contig00383 | ASHM485C_02126180 | F003058 | MTEKEMDRIAEMVVDKIISRQKAYDEEFKAEIQEMVGKDADVEFGTITEDEIIAEELVKLQDRLNQLEAKEDYEAASIVANKIKHLKNKYNL |
| contig00388 | ASHM485C_02158380 | F019836 | MQKANLELPVKQFHQLHDLLGDILDHESETNDFNMENSDIELIEDIRTELFNQIPDEKTYTDYALTGRSSNPSIQPGKLYKIVEKTSKYGFQLEVEDGEIIFCLFNGCAFLTVEIGPLLT |
| contig00388 | ASHM485C_02158390 | F062159 | MEDLTHYIEIDWSGVCEDYDLKHGDISPHQTFEIDHALNKINEVLNEFIKQNR |
| contig00409 | ASHM485C_02320870 | F023593 | MSKIKEIDELAQYQADVILETLKEQVEWSIADYDLSGDDYYNLRDYTVYQTVIKLLEQVDLVDVDYYKQNTIISG |
| contig00552 | ASHM485C_03388950 | F005129 | MNYKVKIESRTLSINLMHHSTVDLGIFAVKATTHSFLFDGLKTEWGADINETEMEFYVNDKRCKYVGFKELYTQLYGNSFNTWEVDLTRQIEEVVAKRIAKEYPGCDVNF |
| contig00601 | ASHM485C_03755860 | F038157 | MGLDVSALSDFNNEVAGELITKMVYGGSTMEYITIKEGVKFQEPINLMEVDLVLQNGTCVSTPSGS |
| contig00601 | ASHM485C_03755870 | F085735 | MDRTYLGISALERGSYNETFALATNYSELLVNQFQKKNDQFLWSAISGSNPAGCASDGLVKIISGSTTGVVSAGTGDATLANLEVMLAALSSDVADRDDLTYFMSVSKFRSLISDIRTQNNFYFDPVSISNRGGILEIGMPFQNAKIVGTVGLQGSNRIVLGPAKQIVAGTDLMSDFSEFQLWYDINSDQLKHRISTKLGVNVAYPEFW |
| contig00615 | ASHM485C_03858450 | F012505 | MSKFMIYNADEVTFILAKTLDEARQWAIMYCDHSDEIIVREVSDIKYKY |
| contig00650 | ASHM485C_04113670 | F005243 | MSNQKTNPSLDQKEPELSKEELAARREEITAFYKDNIKHLEIQAEYEMLLSTIEKARAERMQAQMFMSQAYADQKEGSGEVDSEEATAFKQAMENASKP |
| contig00672 | ASHM485C_04279990 | F023446 | MSKNVEFIDQLCELMGGDRFFLCDQYDQDDLFEMQDNIANLIAENANDGLGLAKYMVNKFPSTFKTEQV |
| contig00822 | ASHM485C_05423850 | F003647 | MVMCEWTLADVKNRASNKAFAKVTILALDIETYKQDLREGNIGGVTYDEFKQIITGYETELQIWNYITELIEKQ |
| contig00822 | ASHM485C_05423860 | F005817 | MRSNLLTRLKPEYKRGLEDNKLRYPAMISDLEFLLSQQFYYNDLTVNQVLNIFVFSDMEYLDRKNFDWRYGEDVFNVENNIA |
| contig00856 | ASHM485C_05673870 | F092857 | MLNKEVQNELNKFAKYVIQQSRSNLTKSDKNVSKDLYNSLGYKLEE |
| contig00864 | ASHM485C_05735840 | F082713 | MKIKGLTEQDCAFVYYVLRDWSQNHSNYDEQDVDDVYEIAK |
| contig00927 | ASHM485C_06207380 | F080238 | MKEETEFEKMLKRLESQPVPERTCSINDDTCESCSG |
| contig00976 | ASHM485C_06567300 | F095487 | MQLDKKFTPANVITVVLTVAFALMAWQDVKGQVEVNSSSIHKGQVVAEEMRDNVHTLKVDVALLKQDSINAAASRDEIKANQAEILKLLRNK |
| contig01046 | ASHM485C_02632270 | F000918 | MNLTNQQAWDQVTETYNESIRRTDICKAMFDQENLIGLTDEQRDQFWSAV |
| contig01282 | ASHM485C_01374780 | F103255 | MNQNPYNNMKLTADILQELSMYVQVNYEDDWYLQEKVNELKEKLYENDR |
| contig01292 | ASHM485C_01448220 | F000918 | MYKTNQQCWDEVTQSIIESERRTKICIDMFGQENLIGLTDEQKELFWQSV |
| contig01545 | ASHM485C_03333520 | F022015 | MRQYRTWQQAFDEMNASVLKHEIIIAIASEVVGKPVENLIGFTNEQRDLVWNDYYNTTEL |
| contig01741 | ASHM485C_04811340 | F036311 | MKIYVDTITKELVLDNGIEYRYPAYCEIQRQKQGDFIIIKTTNNVAVLDKTIYSDLQDEAGTAYASFAALKTALDSYFDSTL |
| contig01774 | ASHM485C_05057250 | F009040 | GSSSGIDPKPLQAAVVKSDGGERCRNAGTKIPAGTVEGGERKRTTAEASKAD |
| contig01825 | ASHM485C_05445030 | F016205 | MSLAELGNTKICYPENETWFICWDNTRENVMAYGSILPTQCMETPWEQVDYYDNEAEWAAILLANGINPFPDPEPEEGEE |
| contig02036 | ASHM485C_01886060 | F008695 | MNKIKNEVTKVEHVWCGPNDRWIYIEYNEQREIAGLNFMQGDEYEYFKESWACNNPYLMAFYTTMLHTFPIEKLNVTTLNFINKVMWAFHETGLIFDKFND |
| contig02036 | ASHM485C_01886070 | F000918 | TNQQCWDEVTQSIIESERRTEICLEMFGQENLIGLTNDQRDLFWESI |
| contig02060 | ASHM485C_03668500 | F043412 | DLAAANQRLAVVNRPKITQDQMTEIQDAINEIVSNIDFTDCNNYDVDFEIDYDSRLAISSIEFNNTHEIVDDISSEIECLFNVIQPEDEA |
| contig02392 | ASHM485C_02192090 | F015149 | RTRLVENYDELFGQGGNTSLDAVSQFSTKWGWYNSIYGLAQGDITRYEDITKLGVHECFMMLSFMKDKAEVEAKRIKQNFK |
| contig02442 | ASHM485C_02571360 | F054910 | MGLGLGLGIWWPTQTSIIPGLLKALCARATYCENKTCTTATLLAIENIK |
| contig02541 | ASHM485C_03305690 | F000918 | MYKTNQQCWDEVTQSIIESERRTEICIDMFGQENLIGLTDEQRELFWQSV |
| contig02700 | ASHM485C_04489860 | F103885 | MNTLLQQLKPKYIKKIKSSKYPFKSERILAKLESSKWYGELTINELSEIYDMCDVDKLRVSAWDMRFGDNVLIKENE |
| contig02947 | ASHM485C_06355130 | F103255 | MRLTADILQELSMYVQVNYEDDWYLQEKVNELKEKLYENDR |
| contig03104 | ASHM485C_00040250 | F003647 | MVMCEWTLADVKSRASNKAFAKVTILKLDIESYKQELKNGTYGGITHAEAEQVLEGYKTELQVWNYITELIEKQ |
| contig03116 | ASHM485C_00124680 | F033809 | KLKDAQDATDHGRAWCKRQPKKWALVAQHIIQKPDEVSTFMRKNKITRSFYYDVQTELMADPESSEIRNAWASEISSVMFQGLDTYRQAQDQYSNRVENGEIQMDGNELFKQGKSLQAFSDIHAKLTGNNIQRVVVEHKTTLDEAEEYARKMLEGIQEVEIVD |
| GOZG4CW03F2QGA | ASHM485C_00555450 | F015230 | MNDSGDITAKFTATERAIDKLQQPTIEIERTRNAIRETQKRNDAIRAELEAVQQRIEKGYKAIRESSDGEQRIASVKKEISRLGGLIAWQDNRSKQFKTIIDRGY |
| GOZG4CW03FTYNX | ASHM485C_01578510 | F008577 | MKLNWEEIKDIANRLDEIIGDNFHDAMWITLSERKYIDHDSEVSDEDILAIKEQLKRIL |
| GOZG4CW03FYAFG | ASHM485C_00931400 | F033501 | MNALQFIKEMDRLAEVHFAEFGYDTCNQHEKQAVIKLLLDNTK |
| GOZG4CW03FZZ6C | ASHM485C_05310260 | F008695 | MDYGIDKVEHVWDNSNDRWIYLEYNKQRKIIGMNFMQGDFYEGFKKDWCKSDAGLTEFYESMLYTFPIEKASVSTLSFINKCMWTFHTAIAQREENPQ |
| GOZG4CW03GKHFZ | ASHM485C_01483320 | F071637 | MSTFIERETENGVHQDSYFTNDGGVYSEFKQDITQLLEDNKNKRNATSDWVKFDPKQNYHQVLDLSMTDVMRIKKEHGIDLLGENVDYKYFFKLIETHYPYMKTTTARL |
| GOZG4CW03GKM4Z | ASHM485C_02904420 | F051049 | MNVEQKLSNLEASYINWMEKHNSYRDAGYIWWEREKDCQEWCPKEKTYKPMSITKTLRIMRGWVKQQKSFC |
| GOZG4CW03GS1MU | ASHM485C_03085880 | F099974 | MGAETKQIAKISYVTDTDVGYYEIGEVEGAFQEAELRDYIKRFGHEKLCTRLGYMQFQVWDALREINGERDEENSPK |
| GOZG4CW03GVWJU | ASHM485C_01726390 | F026402 | MFQDIGKEIILRLNATSAFTTANGGSNRVFPVIIPQGVTYPSTTFEITNVSNFMSKGNSLKSCDVSIRIACFADVYLTTYSQAKAVVEALDLYEVDYTEDGVTYTAKFRFETLDDEYFKSPEKFYKNVIFNCLIIKN |
| GOZG4CW03GWOK4 | ASHM485C_00158940 | F078926 | MKIVIELSEDEAEEMVELGQQLLAVVARLEQLETRLE |
| GOZG4CW03GWOK4 | ASHM485C_00158950 | F049760 | MEATLMNRDRVMVELEEYLNTQEEDYVDPAERRQEMAERAADEAMSKWDDE |
| GQ8TDHF02IOF0D | ASHM485C_04307470 | F003647 | TRKQRSIMVMCEWTLAEVKNRASNKAFAKVTILKLDIESYKQELKNGTYGGITHAEAEQVLEGYKTELQVWNYITELIEKQ |
| GQ8TDHF02IZSI6 | ASHM485C_02565650 | F060921 | LLDRIKPMIFRLYNANESVKASRVSITTNNHIKSFDGINYPNLDYTFHLDNGNIVTKKELAFEYNSIIESMVRHVYDKSHNTIPKV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |