2124908027: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1

Overview

Basic Information

• IMG/M Taxon OID: 2124908027
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046711 | Gp0052025 | Ga0026482
• Sample Name: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 44948789
• Sequencing Scaffolds: 15
• Novel Protein Genes: 16
• Associated Families: 15

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	1
All Organisms → cellular organisms → Bacteria → Acidobacteria	4
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
Not Available	5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan State University, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere → Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan State University, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Plant → Plant rhizosphere

Location Information

• Location: Kellogg Biological Station, Michigan State University
• Coordinates
  • Lat. (^o): 42.406189
  • Long. (^o): -85.40016
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000621	Metagenome	981	Y
F002520	Metagenome / Metatranscriptome	552	Y
F010124	Metagenome	308	Y
F013031	Metagenome / Metatranscriptome	275	Y
F024197	Metagenome / Metatranscriptome	207	Y
F041425	Metagenome	160	Y
F049208	Metagenome	147	N
F057078	Metagenome / Metatranscriptome	136	Y
F076402	Metagenome	118	Y
F078563	Metagenome	116	Y
F081483	Metagenome	114	Y
F085531	Metagenome	111	Y
F087724	Metagenome	110	Y
F094276	Metagenome	106	Y
F094834	Metagenome	105	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
MRS2a_Contig_11524	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	679
MRS2a_Contig_11892	All Organisms → cellular organisms → Bacteria → Acidobacteria	654
MRS2a_Contig_12765	All Organisms → cellular organisms → Bacteria → Acidobacteria	600
MRS2a_Contig_13810	All Organisms → cellular organisms → Bacteria	586
MRS2a_Contig_1443	All Organisms → cellular organisms → Bacteria → Proteobacteria	1829
MRS2a_Contig_16311	Not Available	517
MRS2a_Contig_16589	Not Available	509
MRS2a_Contig_16753	All Organisms → cellular organisms → Bacteria → Acidobacteria	504
MRS2a_Contig_17627	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	526
MRS2a_Contig_2383	Not Available	535
MRS2a_Contig_24981	Not Available	643
MRS2a_Contig_25711	All Organisms → cellular organisms → Bacteria	617
MRS2a_Contig_27058	All Organisms → cellular organisms → Bacteria	754
MRS2a_Contig_600	All Organisms → cellular organisms → Bacteria → Acidobacteria	871
MRS2a_Contig_824	Not Available	869

Sequences

Scaffold ID	Protein ID	Family	Sequence
MRS2a_Contig_10085	MRS2a_00699710	F087724	RTPQHEDFPTLCDSILSLLSANPGDCEVAMEALIEEGAVVRIKPNSALRVRRSAELEQALKELGCGVSFETANGKAHA
MRS2a_Contig_11524	MRS2a_00405130	F085531	GIAMALFVSRLDSRLLSTSGLLPIIPIILYFYAVIQPFYPLLNWTFPDRAGLPQHVDLWIMQLAFMLKSVMYIYVTDRFKKGRFLFYMIYARRFYEDVETKWRRFKSV
MRS2a_Contig_11892	MRS2a_00735830	F013031	FLLSLTLLLVCSSAIGQQTQPQSQPLTFYYDYTVNPGKEEELMTLINTVGAPVRDKLMADGVVLAWGMETPVLRYPGGTTHLIWFSVANWSGVEKVMNAMEAQLQKLAAEDAKRAESAHAGNQKPPMTTAERQREVFDMSKTRDWLARDLVANFGPEPPAGTLPITRYNFIKVKPGKAAEYRRTWEKYNKPVFDKLIADKSLLAYGLSVEEVKTDGD
MRS2a_Contig_12765	MRS2a_00623490	F010124	VYVREQKTETTIMRTYLNCLLASVLFVASISTPVAAQQRNSEGMTVDTVKAKVAKLGVGEKAKATVILKDGTKKKGYIGQTGSDDFILRDRKTDSPTTIRYADVSKVESNRGHSTARNLAIGIGIGAGAFLTILLIAITHLD
MRS2a_Contig_13810	MRS2a_00666540	F078563	MTTDQALVKTNGNGLAAQVPQALKQTAPVQPLTEELVDELLSGRGFRGWLRAAQVARVLGLFSLYLFLDTYDV
MRS2a_Contig_1443	MRS2a_00331580	F002520	VIWNRTEGQXXXXXXXDQEVDDKGTDQEEAKIILTKLRDQGFDADNEKLAVALGRSVEQVEAMISGAETIDDDVVMKARGIAIHRGIEVE
MRS2a_Contig_16311	MRS2a_00211690	F049208	LESQTKPQIGKQFQMDDQTREAMRNNVIASTHAETPYATVELTPREIRPRDRIFLQQWAEKLGVSIDVLLKRILLAAIEDQLYAEKIPEI
MRS2a_Contig_16589	MRS2a_00459630	F057078	MAIKKATTLDDLKQEAAPVAEGYTVLVGPSGTETTVPGSILESLLDSGYVKK
MRS2a_Contig_16753	MRS2a_00611540	F041425	RVKADDASVLRGLARKRFFLIPGTLEQNRALIDAIDRQPVTTRDCYYKKLGASAALIDWLKEGDCESVYCRGVEKDYVTGPKAVPEFASAFAASQKEFRSEETARQWLTTNLAADVRDGFYRNRQGVLDALLKQAGGAVHSVMIDRNGTAYFTDLGPGTYVLSNVIP
MRS2a_Contig_17627	MRS2a_00491950	F057078	MAIKKATTLSDLKQEAAPVAEGYTELVGPGGQVSTVPDSILQALLDSGYTKK
MRS2a_Contig_2383	MRS2a_00274430	F094276	MFDRQSRLPLRRTRPKKTHRPSPVRTWRLVATVMLIALASVYVAFAAISLSTSVPYTQNFSSMGIPLSNPAPSNLSADFRQDTVSAARTL
MRS2a_Contig_24981	MRS2a_00816190	F094834	MAHLNTCRTRKELTGNVWVYYSEPDRNCQDTSHADAYTEEVQ
MRS2a_Contig_25711	MRS2a_00569220	F076402	VDGVEVKRIGTIRSASEGVKISEGARTWELKPGGWMHF
MRS2a_Contig_27058	MRS2a_00452420	F081483	ENVCGPEDLNGMVLAYRICKRYRAVPLPLWWPAVAVGLKALHKMGLGIVKPDQLTRLIGEKTGTAASAKTTLERVRRFPAS
MRS2a_Contig_600	MRS2a_00471060	F024197	ALANIDPTAYHPTAEFAANATEKPRSLRGTVIRKVSVSSATDDTPSGGLSFTNYALTLPGEDKITGTADDWIILNGMVVKHSDIAKGGVGRSVSAGILQP
MRS2a_Contig_824	MRS2a_00678220	F000621	LEASLDRDVNTYLRQLLWDKKERQLMPTTKHELLDWLMDVPEDAEIGTDGAGLALLAILGTNVHLLEVGHIPNADELYXEAINXAXMERLRRIDAAGGETETXXIIVTFQGYISGVPSLFSSDFNTAFVFKNKEQAEAFITEFVDELHNPQILDCP