2124908012: Human Subgingival plaque microbiome from visit number 1 of subject 763496533

Overview

Basic Information

• IMG/M Taxon OID: 2124908012
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046823 | Gp0052292 | Ga0011116
• Sample Name: Human Subgingival plaque microbiome from visit number 1 of subject 763496533
• Sequencing Status: Permanent Draft
• Sequencing Center: Los Alamos National Laboratory
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 266787564
• Sequencing Scaffolds: 31
• Novel Protein Genes: 32
• Associated Families: 28

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	5
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	3
All Organisms → Viruses → Predicted Viral	3
Not Available	5
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae	1
All Organisms → Viruses	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas bobii	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Subgingival Plaque Microbial Communities From Los Alamos National Laboratory, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Unclassified → Subgingival Plaque → Subgingival Plaque Microbial Communities From Los Alamos National Laboratory, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: St. Louis, MO, USA
• Coordinates
  • Lat. (^o): 38.646
  • Long. (^o): -90.224
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F022002	Metagenome	216	Y
F033081	Metagenome	178	Y
F040149	Metagenome	162	N
F043235	Metagenome	156	N
F045567	Metagenome	152	N
F046432	Metagenome	151	Y
F047508	Metagenome	149	N
F051211	Metagenome	144	N
F051213	Metagenome	144	N
F053092	Metagenome	141	N
F054109	Metagenome	140	N
F055792	Metagenome	138	N
F066860	Metagenome	126	N
F071329	Metagenome	122	N
F073671	Metagenome	120	N
F076191	Metagenome	118	N
F077403	Metagenome	117	N
F080165	Metagenome	115	N
F081510	Metagenome	114	N
F084362	Metagenome	112	N
F090517	Metagenome	108	N
F094006	Metagenome	106	Y
F095633	Metagenome	105	N
F101358	Metagenome	102	Y
F103434	Metagenome	101	N
F105377	Metagenome	100	Y
F105380	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
sp300_10694520	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	989
sp300_11109418	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	745
sp300_12604663	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	11626
sp300_12620033	All Organisms → Viruses → Predicted Viral	1364
sp300_12620564	Not Available	614
sp300_12626360	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis	3288
sp300_12627952	All Organisms → cellular organisms → Bacteria	1307
sp300_12628451	All Organisms → Viruses → Predicted Viral	4335
sp300_12631222	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae	3163
sp300_12650887	All Organisms → Viruses	1281
sp300_12655341	Not Available	1077
sp300_12664212	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	543
sp300_12665549	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	921
sp300_12666842	Not Available	5186
sp300_12674808	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	3752
sp300_12678014	Not Available	1599
sp300_12683341	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	4588
sp300_12693300	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas bobii	908
sp300_12699212	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2060
sp300_12700927	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1747
sp300_12702438	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	5234
sp300_12702542	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	691
sp300_12702667	All Organisms → Viruses → Predicted Viral	1495
sp300_12705224	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	16675
sp300_12707328	All Organisms → cellular organisms → Bacteria	1528
sp300_12746036	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	2393
sp300_12749962	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1092
sp300_3012077	All Organisms → Viruses	966
sp300_4981484	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	956
sp300_8826225	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	870
sp300_9850070	Not Available	676

Sequences

Scaffold ID	Protein ID	Family	Sequence
sp300_10694520	sp300_01451700	F080165	MKNKKFLLAILLSLTACNNKTKTISTLELEKTIINYKDLPSKVKERVFYGEAMKLGEEDEERFQDFQETNNPKKYEYYTKQDPQLAWVHYPYIRNKKTKQEYSIDKDGPMGGRYIIYGDSLYISNHYNIYEEDSLKYTFTRYILR
sp300_11109418	sp300_04527880	F095633	MRNCENFTEVGRGEGLTEGELRTMGTLAMKATEELKKTTIRKEAVLLGDVPFDSWDEFAKAVQEMAGYSYEPIPVKINTKRLIATAFLDDRGEMSVEENSVPEEVFINLSRTRCVVDADRSHKSYKFTCPALKKYPSGELYPIREVYVISAIDANGSQEVDFKIIQGGLN
sp300_12604663	sp300_03697480	F081510	MKLPKLPNMQTIKSTAKSAMVTTKILGKKYAPFVLLGVGLAGYGYSVYSGVKSGKKLEATKAKYEAMDAAGEEYTRFEVVKDVAKDVAVPVAVATASTAAIVLGFAIQTNRLKAVSAALAMVTEEHARYRLRAKEVLDEATFKKIDAPLETKTVELDGKEVEVESIVPNEGDFYGQWFKYSSNYVSDDPDYNESYIKEAETYLVNRMMKKGVLTFGEVLDKLGFDVPRAALPFGWTDTDDFYIEWDAHEVFDDVKQEYDLQFYVRWKTPRNLYATTSFKDFVPKKTRKELN
sp300_12620033	sp300_04918990	F077403	MCTVHAEERVSVHFEVRWHRERNPMDTLRRELNVPYLHVVYQNHTDTAYYLVRQDQSNWIFPRLRYYTMIEGYPRRERISDTHYVPKWSTNALRFYKERERRHMTHQVLVWDQAWVVDLEPSIVDGLPKPRLDYQYPHANWSECAYYLQGHLYYLLTPQRGHDWFQVSFLPDHAAHSVATEAVVTEGELRPYVHRLAFVPARSRREYVYSLLAFRLIRGRWHFMLPDWEASARLRDEGTSLNVYLLRDQEAPTSPQGYALPDRYEGYQLYQGLVRGDSIWIEM
sp300_12620564	sp300_01383620	F022002	RTISGFTLGVTTPAEARAIIQRQGGEIEETQAWSDEVVYAITGLKYARRPTLSVRLYFYKGHLRSISFVFGDLKIFEQIESELENKYGTMAEGKATSKMRVKGIADAFTSLEVVVHSFEYDGHVGFAYAYISYTDLELDRAYSAENEI
sp300_12626360	sp300_02457860	F055792	MEIASQALDSTSAVTHRILLLTTQLGESLLASFGAEDGVIAEAMVTRALESNLSIDSTLEEVGPVLIDKGDDGTEAGTTWGRYTLETLQKEGYILFEGXMLPCEXRXVDXRSSVKSLDLESRIIGKAIEPVALPHVARLDEGIPLQRIGGLRDLLVTPDVSQADDL
sp300_12626360	sp300_02457870	F040149	VADEGAKEFRWKVLIKEQGIPVLFVEVVAWYDGRVSSSEILSSFGIALEREPRLTPVWHHDSEDAIHDFIYDISVPKGHALTAVRERETVVMQLLNIHRMF
sp300_12627952	sp300_03283590	F051211	MRVKKAIRIFEKIRDLPYGTSGSDEVWSCYRKCVLLKQELQHIGITSQLLIGVFDWQDLPIPEHTLNLRRQRHERHVILRVFIDGSTYDIDPSIDIGLAPTLPIAHWDGTSSTATMASLKHLRVYRPHSLHERILSRLRRKLFRGNPKEFYTAIDKWLADTRAHQLF
sp300_12628451	sp300_01799050	F105380	MEGRQTQYNINLADLDDQISDGIVYADRSGKMIYKFGAKKIIQTAITKDLTITGLDDEFKMDYYSFWVPDIYLISFKSFNPDGGLYLAYHKKDEKHIYLTNIWPDSRNQDDTYFPNGKRLETKSICTGRMMDDIDSAEYSAWKNDPVTRASQYINKFINARGNADLDFVNSTLRRKVPNHNTKKFAEFLGSITKEQENVNTYEEFIEWTKTTEWFK
sp300_12631222	sp300_01223590	F073671	MSSNQAEHELAELHEKERSLEKALELVREKIRELINYTNKNKAAR
sp300_12650887	sp300_00686870	F105377	VRAEVRDFNELPLLTPEEAFERAREMGWNRPLFDHGYRVRGLADWKAIETLLRQYDAEDAVIASFGLKRFEEIFDALAMLSERGWNLWQTVANVYVGGELRAVPAIRAHYRGD
sp300_12655341	sp300_01768480	F047508	VKYPYLRRIGEYLRHSFDTEDVGWVVKRSKLCALMEHIYYLWGDTYALSKALCTVYEAVTNGIDLIEGLYEVLFFKNVEDNLYAACVVRNVKVALNLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELDEGELQGGAATVEDQDFHKVLYYMVRCELILSSP
sp300_12664212	sp300_03708090	F018385	LRGLHPWSLSPISGTETMMAEHVNRWDPYAEVPIETHRDPVKDDQLIYGVNVPHFTVTVYSPDGRVNKYWNARILEDMLGYCRIACPRDGKILKFKWSDWSVYMFTHDGLNDLVFMPDSGRKIITQLFEKEVK
sp300_12665549	sp300_03444110	F071329	SIGAGMIASRLTKPIVSNSNGIAKILLWFGSVGTGIAASAIVAREVEKQFDETVAAVKEASTHIEIED
sp300_12666842	sp300_03041960	F076191	MKIIAENPAEEALLWRIKALSDEVVRQDNRYTSMPVWTILDNNKAGKDYGAVMYFTGKAAERHIEENDHHYDNPTTCIRSAHDNRELKDVIHLLILAGGNEIPSNHYGVLKDA
sp300_12674808	sp300_01244920	F046432	KWSIIIMQMSESRLGEVISKFQMPQDRYLIEQEGSFGRGEFFWVIKNQTTHQKYLLMNTYSHHGVESEVEFYREQGFDNLEAIPRRIETLEIASDAEDEISKYLFGFYSIFEIKS
sp300_12678014	sp300_02736210	F077403	MNTIMLLLRRLVLIILLLPSMCTVYAEDRISVHFEVRWHREHNPMDTLRRELDVPYLHVVYQNHTDTAYYLVRQDQSNWIFPRLRYYTVIEDGSRPEKYNLTYYVPRWATYPLKGAGRSVRERRHYTHHVLLRDQAWEVELEPSIVDGQPKPRIAYGEGMDNWSECAYYLQGYLYYLMTPQLDHDWYQVTYLSEHMEYSVGMEMVGTEGTLKPFVHRLAFVPAHSRREYVYSLLAFAVIHGRWQFLLPDWEASGRLRDECIPLNVYQLRGKGSTASAPSGYPLPEHYEGYQLYRGWVRGDSISIKM
sp300_12683341	sp300_01815340	F046432	MDVLYNITLVDKWSIIIMQMSESRLGEVISKFQMPQDRYLIEQEGSFGRGEFFWVIKNQTTHQKYLLMNTYSHHGVESEVEFYREQGFDNLEAIPRRIETLEIASDAEDEISKYLFGFYSIFEIKS
sp300_12693300	sp300_02782940	F090517	MNRRILSFCGLLLGLLFLVSSCKKDTPRLQLQLSSVELRQTVWNGTLEYKSAKRGSYSVYLNFLSDSEVEVSVYDSKDPTDPYYVQARYYYTLTDRIFTLKTQVDYELNPPMDKNTWYLIRKEPSLLVFQANPGNPDREATLTLRKKL
sp300_12699212	sp300_04206440	F066860	MTTKKQKLQKQQTIDRWIVIALWASAIWFSLARGFITGVGGWVLALLGPWALIVSCICLAIISRQVKKRHASKDHLTTIVRVSFIVMSISLFICGLAMPDFSDIETFSTLSVYTNNAISFETSKAIAIISGFVVVLSLFVAATFGIAEDREETTEDVAI
sp300_12700927	sp300_04154870	F053092	MQSDQGLILCLTHALLVLGALILESAEMEDTMDDHAVQLFGVLGAKELGIATHRIKADEHVPRDHIPLTLVEGDDIGIVVMIEKVLIGLQDALITTELVAELADTTVIAGSDLTDPVAKDTLSEARLLDVFVSIVSYKLRFFRHK
sp300_12702438	sp300_00371580	F094006	MWGALEPAGPTGALYEPAVSVEAHIGELQAGGIAHRSLFAFGGSNVLAVAELGAEAPHAIDMYDITLCKPLSELFAEELEYAFNFGA
sp300_12702542	sp300_00828840	F101358	HPDTHSIPKRDDVPQYLWNVLRSSGQLDEGWIDTEIIDENGVVLVRMTKPVHRSNIDKLEKCVPLAVLQEQNLDFTNAYLQKAYGVMIKDGRLQPAADTTHATTSSQEHQTEVLPAQGGDTHEHRSGDSARQLVGSVAAKASDTEVDNSLLVERALKR
sp300_12702667	sp300_01313470	F054109	MTGRPKSKKGVKVHTAFKIYPKDKERAQIMADKLDMSLSAYINKAVLEKLANDEKSEA
sp300_12705224	sp300_00554070	F103434	MVGFRPRRGRYLENGPHVVEVTLAIVKEGRTGRRYERGETFTVDKVLVQPSAGNALKATENRVIRGDLTDETTLKIMGTGRVWPGGPHSWVKVIKGPDSLVGKTFQQAGEALTYDASPMTKHFSVRCDTLGTTAR
sp300_12707328	sp300_03501380	F045567	MVTEDVVHTGTHRVEDALLPIDGDILTPRDGTHIVQTERVVVVLVSQEDSIDTIDTETCGLVVEVRATVDEDTLPTLGDDEGRGAQTTVTGIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHGKEIPSLSSESGCVVERVVR
sp300_12746036	sp300_01667570	F090517	LGLLFLASSCKNKKDTPRLEFSSVELRQTVWNGTLEYKNAKRGSYSVYLNFLSDSEVEVSAYDSKDPTASYIVQADCFYTITDRIFTLKTQGDRELHPSMDQNAWYLIRKEPSLLVFQANAGNPDREATLTLRKKL
sp300_12749962	sp300_00834930	F043235	DIVQLRHMDEVVPSDKGHLLIDLCDDDPRSLCGGLGIVTRYPEGAIALFIGLAHRDQCDIYRIDTIPKEVWEFMEVTREIVDTLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRSMASNVLLPGSAH
sp300_3012077	sp300_04936660	F105377	VRAEMRDFDKLPLLTPEEAFERAMEMGWNRPLFDHGYRVRGLNDWRAIETLLRQYDVEDAVIASFGLKRFEEILDAFAMLHERGWRLWQTSANVYVDGELRAVPAIRAHYRGD
sp300_4981484	sp300_04947360	F051213	MNLYKILGALILALSFVFTSCDWVSNEPTIEGNIDKYFDSSAQRKSFRVVNASGKRYNHKVDWDIVGIKQLWVKTYLTKKVDTLSNGDLKISYDWVSFTVKERKSVIEVEVQKNETGQDRSVFFVTSNNRTQSHRPNIVVTQKAK
sp300_8826225	sp300_03747860	F033081	MAWLFNRVMPTDNRPTFVWPRLVVAIEDTRHFDRRELSVIAVVLIVMTIATIKVLLFIPGLDSSVVDLLTRGFATFLPLTWATGAAWVAGAVGVFLIGDFTNYTKKQKSLHGLKTTRCGVYDTLLLFALLEEQAFRSGSEKWSWRERARASVCFGLLHITNIWYSLAAGAALSATGFGFLLVYLWYYRKYRSQVVATAAATTLHTLYNVIALSLIAVAAVAYLVINIAKML
sp300_9850070	sp300_03401270	F084362	MNCTFTVRWSDDKNKPHAKTYETEVAAKKAKKWLLEHGVRSVDIAVKINNKPAGSLQDSEKQPEAAAEQKGFWWEK