Sample 2088090002

Overview

Basic Information
IMG/M Taxon OID	2088090002 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0046224 \| Gp0051928 \| Ga0011000
Sample Name	Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - CNA
Sequencing Status	Permanent Draft
Sequencing Center	Beijing Genomics Institute (BGI), Lifesequencing S.L.
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	64513196
Sequencing Scaffolds	9
Novel Protein Genes	11
Associated Families	11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	1
All Organisms → cellular organisms → Bacteria → Acidobacteria	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Quercus Rhizosphere Microbial Communities From Sierra Nevada National Park, Granada, Spain
Type	Host-Associated
Taxonomy	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Quercus Rhizosphere → Quercus Rhizosphere Microbial Communities From Sierra Nevada National Park, Granada, Spain

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → rhizosphere → soil
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere

Location Information
Location	Sierra Nevada National Park, Granada, Spain
Coordinates	Lat. (^o)	36.96213	Long. (^o)	-3.41928	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

Zoom:	Powered by OpenStreetMap^©

Family	Category	Number of Sequences	3D Structure?
F003507	Metagenome / Metatranscriptome	482	Y
F003529	Metagenome / Metatranscriptome	481	Y
F017218	Metagenome	242	Y
F022832	Metagenome / Metatranscriptome	212	Y
F030489	Metagenome / Metatranscriptome	185	Y
F065885	Metagenome	127	Y
F067652	Metagenome / Metatranscriptome	125	Y
F068695	Metagenome	124	Y
F086987	Metagenome	110	Y
F089069	Metagenome / Metatranscriptome	109	Y
F101412	Metagenome / Metatranscriptome	102	Y

Family

Category

Number of Sequences

3D Structure?

F003507

Metagenome / Metatranscriptome

482

F003529

Metagenome / Metatranscriptome

481

F017218

Metagenome

242

F022832

Metagenome / Metatranscriptome

212

F030489

Metagenome / Metatranscriptome

185

F065885

Metagenome

127

F067652

Metagenome / Metatranscriptome

125

F068695

Metagenome

124

F086987

Metagenome

110

F089069

Metagenome / Metatranscriptome

109

F101412

Metagenome / Metatranscriptome

102

Scaffold	Taxonomy	Length	IMG/M Link
CNA_F6ESG4R02HBH5Q	Not Available	507	Open in IMG/M
CNA_F6ESG4R02HVWW9	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	519	Open in IMG/M
CNA_F6ESG4R02IBVHE	All Organisms → cellular organisms → Bacteria → Acidobacteria	522	Open in IMG/M
CNA_F6ESG4R02JRG3V	Not Available	526	Open in IMG/M
CNA_F7QKVOU01AQZEA	All Organisms → cellular organisms → Bacteria	501	Open in IMG/M
CNA_F7QKVOU01AQZEE	Not Available	509	Open in IMG/M
CNA_F7QKVOU01CF6Y8	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	500	Open in IMG/M
CNA_F7QKVOU01D2R8C	Not Available	502	Open in IMG/M
CNA_F7QKVOU01DPAZ0	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	527	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

CNA_F6ESG4R02HBH5Q

Not Available

507

Open in IMG/M

CNA_F6ESG4R02HVWW9

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium

519

Open in IMG/M

CNA_F6ESG4R02IBVHE

All Organisms → cellular organisms → Bacteria → Acidobacteria

522

Open in IMG/M

CNA_F6ESG4R02JRG3V

Not Available

526

Open in IMG/M

CNA_F7QKVOU01AQZEA

All Organisms → cellular organisms → Bacteria

501

Open in IMG/M

CNA_F7QKVOU01AQZEE

Not Available

509

Open in IMG/M

CNA_F7QKVOU01CF6Y8

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium

500

Open in IMG/M

CNA_F7QKVOU01D2R8C

Not Available

502

Open in IMG/M

CNA_F7QKVOU01DPAZ0

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria

527

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
CNA_F6ESG4R02HBH5Q	CNA_00726310	F067652	MNVGDPNRADGDHLLLRESDMPVVVKIPGKVKTGGAKGHYCKSNFS
CNA_F6ESG4R02HVWW9	CNA_00362490	F003507	LRTDFAVMYACGLQEYQAPRSQVHFVLPETLCEFRGRIDEVLMDELIAIQAAAAMEAGLVSPAHLVVDTFPCEQGSQRVTDATTLYKAQKNP
CNA_F6ESG4R02IBVHE	CNA_00402770	F065885	MSKHALSVLTAVILGLATAAFALGQTTTTTVTKAVQNPDGSYTVIEYPGEKRKSLRLKPVVSQ
CNA_F6ESG4R02JRG3V	CNA_01075980	F003529	MAIFESLANTLNRLAVGDRVKVTLRLEAGRYPNTMDGLITEKDDAGNFSVKSDEGIIRVNTVDILSVTKLSI
CNA_F7QKVOU01AQZEA	CNA_01649750	F086987	VHTAVEQQNSGGPLKGRSFIITYQTKFERGNGMETFTLIEEEKEWKLARYFVNSTDLE
CNA_F7QKVOU01AQZEE	CNA_00643210	F089069	LQAIHRYVIDTPALKTVTEEIRAVVETVWPELISKLPPKP
CNA_F7QKVOU01CF6Y8	CNA_00816070	F017218	MDTRDIAAILIGLQVGLVIGLLAVGTTLLAPFGVGLLGAAAGFGVRRARLELIRRALRSQLR
CNA_F7QKVOU01CSQSY	CNA_01355370	F022832	RRNLGEPRRAGASAVQLLYKEVFGNPPSGIKYEALKAANMSSTNMTRMVLMPPKAPPETIAILRKAFDGLSRDQDFLQEAITVMRFQPRFEVGEAGERLFQRASQTSPEVVNFLRKYIEEANK
CNA_F7QKVOU01D2R8C	CNA_01246240	F068695	LAFSIVIGLSVQAQQQTNRNNTREVGNMLQRLERSSSRFRNSLNVALIHGSVDQTRPQNDISTFQPGLDLAIKQFRDQFTRRLAVSSDVESILQKASPINSFITQNTLNRGSRMTGHQFEQI
CNA_F7QKVOU01DPAZ0	CNA_01362220	F101412	MKDRSLPQGERGAELLLAHCAPLADADLSRPPALLRLEEALGGELARLLVGALATRRSR
CNA_F7QKVOU01ERXJ2	CNA_00974660	F030489	QQRASDSALAGVDENSSRVEVDLPALAPRSASRLDLRAALTAGSSSLTGPGLNSRFSGRVGLIDHAALTGETEFGMTGRDGQVLRALRVTTDMPVVLTTRLQLSYSYRTGTQFPIGQVLEARILRRLNLGW

Scaffold ID

Protein ID

Family

Sequence

CNA_F6ESG4R02HBH5Q

CNA_00726310

F067652

MNVGDPNRADGDHLLLRESDMPVVVKIPGKVKTGGAKGHYCKSNFS

CNA_F6ESG4R02HVWW9

CNA_00362490

F003507

LRTDFAVMYACGLQEYQAPRSQVHFVLPETLCEFRGRIDEVLMDELIAIQAAAAMEAGLVSPAHLVVDTFPCEQGSQRVTDATTLYKAQKNP

CNA_F6ESG4R02IBVHE

CNA_00402770

F065885

MSKHALSVLTAVILGLATAAFALGQTTTTTVTKAVQNPDGSYTVIEYPGEKRKSLRLKPVVSQ

CNA_F6ESG4R02JRG3V

CNA_01075980

F003529

MAIFESLANTLNRLAVGDRVKVTLRLEAGRYPNTMDGLITEKDDAGNFSVKSDEGIIRVNTVDILSVTKLSI

CNA_F7QKVOU01AQZEA

CNA_01649750

F086987

VHTAVEQQNSGGPLKGRSFIITYQTKFERGNGMETFTLIEEEKEWKLARYFVNSTDLE

CNA_F7QKVOU01AQZEE

CNA_00643210

F089069

LQAIHRYVIDTPALKTVTEEIRAVVETVWPELISKLPPKP

CNA_F7QKVOU01CF6Y8

CNA_00816070

F017218

MDTRDIAAILIGLQVGLVIGLLAVGTTLLAPFGVGLLGAAAGFGVRRARLELIRRALRSQLR

CNA_F7QKVOU01CSQSY

CNA_01355370

F022832

RRNLGEPRRAGASAVQLLYKEVFGNPPSGIKYEALKAANMSSTNMTRMVLMPPKAPPETIAILRKAFDGLSRDQDFLQEAITVMRFQPRFEVGEAGERLFQRASQTSPEVVNFLRKYIEEANK

CNA_F7QKVOU01D2R8C

CNA_01246240

F068695

LAFSIVIGLSVQAQQQTNRNNTREVGNMLQRLERSSSRFRNSLNVALIHGSVDQTRPQNDISTFQPGLDLAIKQFRDQFTRRLAVSSDVESILQKASPINSFITQNTLNRGSRMTGHQFEQI

CNA_F7QKVOU01DPAZ0

CNA_01362220

F101412

MKDRSLPQGERGAELLLAHCAPLADADLSRPPALLRLEEALGGELARLLVGALATRRSR

CNA_F7QKVOU01ERXJ2

CNA_00974660

F030489

QQRASDSALAGVDENSSRVEVDLPALAPRSASRLDLRAALTAGSSSLTGPGLNSRFSGRVGLIDHAALTGETEFGMTGRDGQVLRALRVTTDMPVVLTTRLQLSYSYRTGTQFPIGQVLEARILRRLNLGW

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

2088090002: Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - CNA

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences