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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F086987 |
| Family Type | Metagenome |
| Number of Sequences | 110 |
| Average Sequence Length | 53 residues |
| Representative Sequence | NSGGALKGHAYILTYQTRFERGDGMETFTLIEENGRWLLARYFVNSTALK |
| Number of Associated Samples | 96 |
| Number of Associated Scaffolds | 110 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | No |
| Most common taxonomic group | Bacteria |
| % of genes with valid RBS motifs | 0.91 % |
| % of genes near scaffold ends (potentially truncated) | 99.09 % |
| % of genes from short scaffolds (< 2000 bps) | 96.36 % |
| Associated GOLD sequencing projects | 91 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.55 |
| Hidden Markov Model |
|---|
| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Bacteria (52.727 % of family members) |
| NCBI Taxonomy ID | 2 |
| Taxonomy | All Organisms → cellular organisms → Bacteria |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (10.000 % of family members) |
| Environment Ontology (ENVO) | Unclassified (48.182 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere (66.364 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 0.00% β-sheet: 42.31% Coil/Unstructured: 57.69% | Feature Viewer |
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| Powered by Feature Viewer | |||||
| Structure Viewer | |
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| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.55 |
| Powered by PDBe Molstar | |
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| Pfam ID | Name | % Frequency in 110 Family Scaffolds |
|---|---|---|
| PF00206 | Lyase_1 | 68.18 |
| PF13211 | DUF4019 | 16.36 |
| PF10397 | ADSL_C | 6.36 |
| PF09685 | DUF4870 | 1.82 |
| PF02700 | PurS | 0.91 |
| PF05598 | DUF772 | 0.91 |
| PF00753 | Lactamase_B | 0.91 |
| COG ID | Name | Functional Category | % Frequency in 110 Family Scaffolds |
|---|---|---|---|
| COG1828 | Phosphoribosylformylglycinamidine (FGAM) synthase, PurS subunit | Nucleotide transport and metabolism [F] | 0.91 |
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| Name | Rank | Taxonomy | Distribution |
| All Organisms | root | All Organisms | 52.73 % |
| Unclassified | root | N/A | 47.27 % |
| Visualization |
|---|
| Powered by ApexCharts |
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| Habitat | Taxonomy | Distribution |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 10.00% |
| Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 7.27% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 7.27% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere | 7.27% |
| Populus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere | 7.27% |
| Agricultural Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil | 6.36% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere | 6.36% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere | 3.64% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere | 3.64% |
| Terrestrial Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil | 2.73% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere | 2.73% |
| Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere | 2.73% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 2.73% |
| Groundwater Sediment | Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment | 1.82% |
| Groundwater Sediment | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment | 1.82% |
| Switchgrass Rhizosphere | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere | 1.82% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil | 1.82% |
| Corn Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere | 1.82% |
| Switchgrass Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere | 1.82% |
| Arabidopsis Rhizosphere | Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere | 1.82% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere | 1.82% |
| Polar Desert Sand | Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand | 0.91% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil | 0.91% |
| Serpentine Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil | 0.91% |
| Glacier Forefield Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil | 0.91% |
| Terrestrial | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial | 0.91% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil | 0.91% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil | 0.91% |
| Grasslands Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil | 0.91% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 0.91% |
| Hardwood Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil | 0.91% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil | 0.91% |
| Soil | Environmental → Terrestrial → Soil → Loam → Grasslands → Soil | 0.91% |
| Quercus Rhizosphere | Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Quercus Rhizosphere | 0.91% |
| Tabebuia Heterophylla Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere | 0.91% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere | 0.91% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere | 0.91% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 0.91% |
| Visualization |
|---|
| Powered by ApexCharts |
| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 2088090002 | Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - CNA | Host-Associated | Open in IMG/M |
| 2140918013 | Soil microbial communities from Great Prairies - Iowa soil (MSU Assemblies) | Environmental | Open in IMG/M |
| 3300003203 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 | Host-Associated | Open in IMG/M |
| 3300004480 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4 | Environmental | Open in IMG/M |
| 3300005294 | Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil | Environmental | Open in IMG/M |
| 3300005295 | Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 | Environmental | Open in IMG/M |
| 3300005328 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG | Host-Associated | Open in IMG/M |
| 3300005331 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG | Host-Associated | Open in IMG/M |
| 3300005335 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG | Host-Associated | Open in IMG/M |
| 3300005341 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG | Environmental | Open in IMG/M |
| 3300005354 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG | Host-Associated | Open in IMG/M |
| 3300005444 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG | Environmental | Open in IMG/M |
| 3300005467 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG | Environmental | Open in IMG/M |
| 3300005543 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG | Host-Associated | Open in IMG/M |
| 3300005546 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG | Environmental | Open in IMG/M |
| 3300005549 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG | Environmental | Open in IMG/M |
| 3300005563 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 | Host-Associated | Open in IMG/M |
| 3300005616 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 | Host-Associated | Open in IMG/M |
| 3300005618 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 | Host-Associated | Open in IMG/M |
| 3300005841 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 | Host-Associated | Open in IMG/M |
| 3300005843 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 | Host-Associated | Open in IMG/M |
| 3300005844 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 | Host-Associated | Open in IMG/M |
| 3300006058 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 | Host-Associated | Open in IMG/M |
| 3300006755 | Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter | Environmental | Open in IMG/M |
| 3300006804 | Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 | Environmental | Open in IMG/M |
| 3300006806 | Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 | Environmental | Open in IMG/M |
| 3300006854 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4 | Host-Associated | Open in IMG/M |
| 3300006876 | Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200 | Environmental | Open in IMG/M |
| 3300006880 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 | Host-Associated | Open in IMG/M |
| 3300006918 | Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100 | Environmental | Open in IMG/M |
| 3300006969 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 | Host-Associated | Open in IMG/M |
| 3300007004 | Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost | Environmental | Open in IMG/M |
| 3300009090 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG | Environmental | Open in IMG/M |
| 3300009093 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG | Host-Associated | Open in IMG/M |
| 3300009100 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2 | Host-Associated | Open in IMG/M |
| 3300009101 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG | Host-Associated | Open in IMG/M |
| 3300009156 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2) | Host-Associated | Open in IMG/M |
| 3300009162 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2 | Host-Associated | Open in IMG/M |
| 3300009177 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG | Host-Associated | Open in IMG/M |
| 3300009789 | Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28 | Environmental | Open in IMG/M |
| 3300010360 | Tropical forest soil microbial communities from Panama - MetaG Plot_6 | Environmental | Open in IMG/M |
| 3300010397 | Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4 | Environmental | Open in IMG/M |
| 3300011119 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG | Host-Associated | Open in IMG/M |
| 3300012360 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG | Environmental | Open in IMG/M |
| 3300012361 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG | Environmental | Open in IMG/M |
| 3300012685 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG | Environmental | Open in IMG/M |
| 3300012930 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300012944 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300012957 | Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG | Environmental | Open in IMG/M |
| 3300012958 | Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG | Environmental | Open in IMG/M |
| 3300014325 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG | Host-Associated | Open in IMG/M |
| 3300014965 | Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - T2 | Environmental | Open in IMG/M |
| 3300014969 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG | Host-Associated | Open in IMG/M |
| 3300015069 | Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G4C, Ice margin, adjacent to proglacial lake | Environmental | Open in IMG/M |
| 3300015264 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly) | Environmental | Open in IMG/M |
| 3300015374 | Col-0 rhizosphere combined assembly | Host-Associated | Open in IMG/M |
| 3300017789 | Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ322 (21.06) | Environmental | Open in IMG/M |
| 3300018000 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coex | Environmental | Open in IMG/M |
| 3300018073 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1 | Environmental | Open in IMG/M |
| 3300018422 | Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T | Environmental | Open in IMG/M |
| 3300018429 | Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T | Environmental | Open in IMG/M |
| 3300018476 | Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T | Environmental | Open in IMG/M |
| 3300019767 | Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T | Environmental | Open in IMG/M |
| 3300020018 | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2s2 | Environmental | Open in IMG/M |
| 3300021073 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redo | Environmental | Open in IMG/M |
| 3300021081 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_coex redo | Environmental | Open in IMG/M |
| 3300024186 | Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK29 | Environmental | Open in IMG/M |
| 3300025907 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025912 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025917 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025918 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025925 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025926 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025934 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025935 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025940 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025942 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025960 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026023 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026088 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026089 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026116 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026118 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026285 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes) | Environmental | Open in IMG/M |
| 3300027018 | Grasslands soil microbial communities from Kansas, USA, that are Nitrogen fertilized - NN575 (SPAdes) | Environmental | Open in IMG/M |
| 3300027862 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300031226 | Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S | Environmental | Open in IMG/M |
| 3300031716 | Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3 | Environmental | Open in IMG/M |
| 3300031903 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 | Host-Associated | Open in IMG/M |
| 3300031949 | Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT98D197 | Environmental | Open in IMG/M |
| 3300031995 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 | Host-Associated | Open in IMG/M |
| 3300032002 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 | Host-Associated | Open in IMG/M |
| 3300032003 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D1 | Environmental | Open in IMG/M |
| 3300032174 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05 | Environmental | Open in IMG/M |
| 3300032211 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D1 | Environmental | Open in IMG/M |
| 3300033412 | Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC | Environmental | Open in IMG/M |
| Geographical Distribution | |
|---|---|
| Zoom: | Powered by OpenStreetMap |
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| Protein ID | Sample Taxon ID | Habitat | Sequence |
| CNA_01649750 | 2088090002 | Quercus Rhizosphere | VHTAVEQQNSGGPLKGRSFIITYQTKFERGNGMETFTLIEEEKEWKLARYFVNSTDLE |
| Iowa-Corn-GraphCirc_00495050 | 2140918013 | Soil | NSGGPLKGRAFIVAYRTKFQNGEGMETFTLVERDGRWQLTRYFVNSTALK |
| JGI25406J46586_100424261 | 3300003203 | Tabebuia Heterophylla Rhizosphere | SGGALKGHVYILTYQTRFERGDGMETFTLIEENGRWLLARYFVNSTALT* |
| Ga0062592_1009611872 | 3300004480 | Soil | QQNSGGVLKGHVFILLYETRFERGEGMETFTLIEESGQWRLARYFVNSTALK* |
| Ga0065705_110297841 | 3300005294 | Switchgrass Rhizosphere | EQRNSGGPLQGHVFIVTYETKFEQGQGMEWFTIIEEGNHWALARYLVNSTALR* |
| Ga0065707_105043002 | 3300005295 | Switchgrass Rhizosphere | QRNSGGPLQGHVFIVTYETKFEQGQGMEWFTIIEEGNHWALARYLVNSTALR* |
| Ga0070676_104650241 | 3300005328 | Miscanthus Rhizosphere | EQRNSGGPLQGHVFIVTYQTKFEQGQGMEWFTLIEEDNRWALARYLVNSTALR* |
| Ga0070670_1017583081 | 3300005331 | Switchgrass Rhizosphere | SLNSAAEQQNSGGPLKGHVFILSYETRFERGDGMENFTLIEENGNWRLARYFVNSTALK* |
| Ga0070666_110835722 | 3300005335 | Switchgrass Rhizosphere | GPLKGHSFIVVYQTKFERGEAMETFTLVEENGKWKLARYLVNSTSLR* |
| Ga0070691_106599571 | 3300005341 | Corn, Switchgrass And Miscanthus Rhizosphere | NSAAEQQNSGGLLKGHVFILSYETRFERGDGMENFTLIEENGRWALARYFVNSTALK* |
| Ga0070675_1007850562 | 3300005354 | Miscanthus Rhizosphere | ENRALHSATEQQNSGGALKGNVYIVAYQTKFELGEGMETYTLVERNGHWLLARYLVNSTALNQ* |
| Ga0070694_1016317921 | 3300005444 | Corn, Switchgrass And Miscanthus Rhizosphere | GALKGHAFIVSYQTKFERGEAMETFTVIEENGKWKLARYLVNSTSLK* |
| Ga0070706_1010559222 | 3300005467 | Corn, Switchgrass And Miscanthus Rhizosphere | SHRVYAAREENNSGGALKGHAFIVTYQTKFERGDGMETFTLIEQNNQWLLARYLATSTALK* |
| Ga0070706_1014375051 | 3300005467 | Corn, Switchgrass And Miscanthus Rhizosphere | ATEQRNASEPLKGHLFVLTYQTNFEKGEGMETFTLIEQNGRWLLARYFVNSTALK* |
| Ga0070672_1002532682 | 3300005543 | Miscanthus Rhizosphere | ENSGGPLKGHSFIVVYQTKFERGEAMETFTLVEENGKWKLARYLVNSTSLR* |
| Ga0070696_1002298642 | 3300005546 | Corn, Switchgrass And Miscanthus Rhizosphere | REENNSGGALKGHAFIVTYQTKFERGDGMETFTLIEQNNQWLLARYLATSTALK* |
| Ga0070696_1003560892 | 3300005546 | Corn, Switchgrass And Miscanthus Rhizosphere | EQQNSGGVLKGHVYILGYQTRFERGEGMETFTLIEENGRWRLARYFVNSTALQ* |
| Ga0070704_1001780661 | 3300005549 | Corn, Switchgrass And Miscanthus Rhizosphere | VENRVLQSATEQTNSGGPLKGRAYILTYRTKFQRGEGMETFTLVERKGHWLLARYVVNSTALQ* |
| Ga0070704_1018386012 | 3300005549 | Corn, Switchgrass And Miscanthus Rhizosphere | VLKGHVFILSYETHFERGDGMENFTLIEENGQWRLARYFVNSTLLKD* |
| Ga0068855_1017637022 | 3300005563 | Corn Rhizosphere | NSGGVLKGHVFILSYETHFERGDGMENFTLIEENGQWRLARYFVNSTLLKN* |
| Ga0068852_1021801692 | 3300005616 | Corn Rhizosphere | LKGHVYILTYQTRFERGDGMETFTLIQENDRWLLARYFVNSTALT* |
| Ga0068852_1027421011 | 3300005616 | Corn Rhizosphere | LKGHVYILTYQTRFEQGDGMETFTLIEENGRWKLARYLVNSTALK* |
| Ga0068864_1006052652 | 3300005618 | Switchgrass Rhizosphere | NSGGPLKGRAYIVAYRTKFQNGEGMETFTLVEREGRWQLARYFVNSTALK* |
| Ga0068863_1005351381 | 3300005841 | Switchgrass Rhizosphere | ESRTVNSATEQQNSGGPLKGRAFIVTYQTKFELGEAMETFTLVEENGRWKLARYLVNSTALK* |
| Ga0068860_1026468502 | 3300005843 | Switchgrass Rhizosphere | GHVYILTYQTRFERGEAMETFTLIEENGRWKLARYLVNSTALK* |
| Ga0068862_1007533522 | 3300005844 | Switchgrass Rhizosphere | SLNSATRQENSGGVLKGHVFILSYETHFERGDGMETFTLIEENGRWLLARYFVNSTALK* |
| Ga0068862_1015322281 | 3300005844 | Switchgrass Rhizosphere | ENSGGALKGHVFILSYETHFERGDAMETFTLIEENGHWLLARYFVNSTALK* |
| Ga0075432_102985421 | 3300006058 | Populus Rhizosphere | SGGALKGHVFILSYETNFEHGAGMETFTLIEENGRWLLARYFVNSTALK* |
| Ga0079222_117533922 | 3300006755 | Agricultural Soil | KGHVFILSYETRFERGPAMETFTLIEDNGHWRLARYFVNSTALQ* |
| Ga0079221_115882922 | 3300006804 | Agricultural Soil | GALKGHAYILTYQTRFERGDAMETFTLIEENGRWLLARYFVNSTALK* |
| Ga0079220_105208381 | 3300006806 | Agricultural Soil | TLNSATEQQNSGGALKGHAYILTYQTRFERGEGMETFTLIEENGRWLLARYFVNSMALK* |
| Ga0075425_1000881296 | 3300006854 | Populus Rhizosphere | ALKGHAFIVSYQTKFERGEAMETFTVIEENGKWKLARYLVNSTSLR* |
| Ga0079217_107075071 | 3300006876 | Agricultural Soil | SATEQENSGGALKGRAFIVTYRTKFENAEGMETFTLVERNGKWLLARYFVNSTALG* |
| Ga0075429_1008973032 | 3300006880 | Populus Rhizosphere | QNSGGPLKGHVFILSYDTRFERGSGMETFTLIEDNGHWLLARYLVNSTDLK* |
| Ga0079216_101603772 | 3300006918 | Agricultural Soil | GGALKGHVYILSYQTRFERGEGMETFTLVEQNGRWSLARYFVNSTALR* |
| Ga0075419_101868051 | 3300006969 | Populus Rhizosphere | LKGHVFILSYDTRFERGSGMETFTLIEDNGHWLLARYLVNSTD |
| Ga0075419_106110562 | 3300006969 | Populus Rhizosphere | LKGHVFILSYETHFERGDGMENFTLIEENGQWRLARYFVNSTLLKN* |
| Ga0079218_102835941 | 3300007004 | Agricultural Soil | QNSGGPLKGHVFILSYETRFERGAGMETFTLIEEDGRWLLARYLVNSTNLQ* |
| Ga0079218_120389651 | 3300007004 | Agricultural Soil | ATEQENSGGALKGRAFIVTYRTKFENAEGMETFTLVERNGKWLLARYFVNSTALG* |
| Ga0099827_109363041 | 3300009090 | Vadose Zone Soil | QNSGGPLKGRAYIVTYQTKFQNGEGMETFTLVERNGRWLLARYFVNSTALK* |
| Ga0105240_112414281 | 3300009093 | Corn Rhizosphere | NSGGPLKGHAFIITYQTKFERGEAMETFTLIEENGHWKLARYLVNSTAL* |
| Ga0075418_127721721 | 3300009100 | Populus Rhizosphere | QRNSGGPLQGHVFIVTYQTKFQQGQGMEWFTLIEEGNRWALARYLVNSTALR* |
| Ga0105247_116769431 | 3300009101 | Switchgrass Rhizosphere | TEQQNSGGALKGNVYIVAYQTKFELGEGMETYTLVERNGHWLLARYLVNSTALN* |
| Ga0111538_121149552 | 3300009156 | Populus Rhizosphere | SGVLKGHVFILTYSTRFESGEGMETFTLIEENGRWLLARYFVNSTAAR* |
| Ga0075423_114760071 | 3300009162 | Populus Rhizosphere | ANEQQNSGGVLKGHVFILMYETNFERGDGMETFTLIEENGQWLLARYFVNSTALK* |
| Ga0105248_121879741 | 3300009177 | Switchgrass Rhizosphere | LKGHIFILSYETRFERGAGMETFTLIEDSGHWLLARYLVNSTALQ* |
| Ga0126307_102647161 | 3300009789 | Serpentine Soil | NSGGALKGHVFILAYETRFERGEAMETFTLIEENGRWLLARYFVNSTALK* |
| Ga0126372_120081751 | 3300010360 | Tropical Forest Soil | GGALKGHVFILTYQTRFERGDGMETFTLIEENGRWLLARYFVNSTALK* |
| Ga0134124_105556371 | 3300010397 | Terrestrial Soil | GGPLKGRAFIVGYRTKFQNGEGMETFTLVERDGRWQLARYFVNSTALK* |
| Ga0134124_116340851 | 3300010397 | Terrestrial Soil | SGGALKGHVYILTYQTRFELGEAMETFTLIEENGRWRLARYFVNSTALQ* |
| Ga0134124_125237332 | 3300010397 | Terrestrial Soil | GGTLKGHIFILSYETRFERGAGMETFTLIEDNGHWLLARYLVNSTALQ* |
| Ga0105246_101059651 | 3300011119 | Miscanthus Rhizosphere | PLKGHVFILSYETRFERGDGMENFTLIEENGRWALARYFVNSTALK* |
| Ga0137375_108570241 | 3300012360 | Vadose Zone Soil | SGGPLRGRAYIVSYQTKFERGEGMETFTLVEKDHQWLLARYFVNSTALK* |
| Ga0137360_118901482 | 3300012361 | Vadose Zone Soil | ALKGHAFIVTYQTKFERGEGMETFTLVEQNGRWVLARYLATSTALK* |
| Ga0137397_106614251 | 3300012685 | Vadose Zone Soil | NSGGALKGHAFIVTYQTKFERGEGMETFTLIEQNHQWLLARYLATSTALK* |
| Ga0137407_119378951 | 3300012930 | Vadose Zone Soil | EQQNSGGPLKGRAYIVTYQTKFQNGEGMETFTLVERNGHWLLARYFVNSTALK* |
| Ga0137410_102092032 | 3300012944 | Vadose Zone Soil | RELHSASEQNSSSGPLAGHSYVLMYQTRFEHGAGMETFTLVERNNRWQLARYFVNSTALAGC* |
| Ga0164303_114836272 | 3300012957 | Soil | LKGHAFIITYQSKFERGEAMETFTLIQENGQWKLARYLVNSTALQ* |
| Ga0164299_113489811 | 3300012958 | Soil | GGALKGHAYIPTYQTRFERGDGMETFTLIEENRRWLLARYFVNSTALQ* |
| Ga0163163_108564812 | 3300014325 | Switchgrass Rhizosphere | HSAAEQQNSGGTLKGHVFILSYETRFERGAGMETFTLIEDNGHWLLARYFVNSTALQ* |
| Ga0120193_100265081 | 3300014965 | Terrestrial | SRSLTYANEQENSGGPLKGHVFILSYRTRFERGDAGETFTLVEENGSWLLARYLVNSTALNT* |
| Ga0157376_127520611 | 3300014969 | Miscanthus Rhizosphere | NSGGALKGHAYILTYQTRFERGDGMETFTLIEENGRWLLARYFVNSTALK* |
| Ga0167633_1287952 | 3300015069 | Glacier Forefield Soil | SVTEQQNSGGPLKGRAYIVTYRTKFHNAEGMETFTLVERGGRWLLARYFVNSTALK* |
| Ga0137403_115545201 | 3300015264 | Vadose Zone Soil | KLGKPGNRVLHSASEQNSSNGDLAGHSYLLMYETRFERGEGMETFTLVERNGRWLLARYFVNSTALK* |
| Ga0132255_1004358333 | 3300015374 | Arabidopsis Rhizosphere | SATEQQNSGGPLKGRAFIVTYQTKFELGEAMETFTLVEENGRWKLARYLVNSTALK* |
| Ga0132255_1023323311 | 3300015374 | Arabidopsis Rhizosphere | VENRTLQTATEQNNSGGPLRGRAYIISYQTKFERGEGMETFTLVERDHQWLLARYFVNSTALK* |
| Ga0136617_111347781 | 3300017789 | Polar Desert Sand | HNSGGPLKGDAFVITYQTKFEKAPGMETFTLVKRDNRWLLARYFVNSTALK |
| Ga0184604_103214601 | 3300018000 | Groundwater Sediment | LQSATEQQNSGGPLKGRAYIVNYRTKFQNGEGMETFTLVERNGRWLLARYFVNSTALK |
| Ga0184624_101024302 | 3300018073 | Groundwater Sediment | QNSSGQMKGHVFIITYQSKFERGEAMETFTLIEENGRWKLARYLVNSTSLK |
| Ga0190265_112485682 | 3300018422 | Soil | LKGHVFILSYQTRFERGEGMETFTLIEENGQWRLARYLVNSTALKQ |
| Ga0190265_126421591 | 3300018422 | Soil | VENRSLHSATEQQNSGGPLKGHVYILRYETRFERGSGMETFTLTEEKGQWQLARYLVNSTNLK |
| Ga0190272_113898402 | 3300018429 | Soil | QSAAEQQNSGGPLKGRAYIVTYRTRFQNGEGMETFTLIERDRRWQLARYFVNSTALK |
| Ga0190274_120105831 | 3300018476 | Soil | TRQENSGGALKGHVFILSYETHFEHGDGMETFTLIEENGRWLLARYFVNSTALK |
| Ga0190267_103825522 | 3300019767 | Soil | QNSGGPLKGRAYMVNYRTKFQNGEGMETFTLVERDGRWLLARYFVNSTALE |
| Ga0193721_11656752 | 3300020018 | Soil | VENRTLQSATEQQNSGGPLKGRAYIVAYRTKFQNGEGMETYTVVERDGRWLLARYFVNSTALK |
| Ga0210378_101696612 | 3300021073 | Groundwater Sediment | AVENRMLQAATEQQNSGGPLKGRAYIATYRTRFQNGEGMETFTLIERDHRWLLARYFVNSTALK |
| Ga0210379_100933822 | 3300021081 | Groundwater Sediment | NSGGPMKGRAFIVAYRTKFQNGEGMETFTLVERDGRWLLARYFVNSTALK |
| Ga0247688_10669531 | 3300024186 | Soil | GALKGHAFIVSYQTKFERGEAMETFTVIEENGKWKLARYLVNSTSLR |
| Ga0207645_104279412 | 3300025907 | Miscanthus Rhizosphere | EQRNSGGPLQGHVFIVTYQTKFEQGQGMEWFTLIEEDNRWALARYLVNSTALR |
| Ga0207645_105393991 | 3300025907 | Miscanthus Rhizosphere | NSGGALKGHVYILSFQTRFERGDGMETFTLIEENGRWRLARYLVNSTALQ |
| Ga0207707_113781001 | 3300025912 | Corn Rhizosphere | QENSGGALKGHVFILSYRTRFERGEAGETFTLIEENGQWLLARYLVNSTLLQ |
| Ga0207660_109184472 | 3300025917 | Corn Rhizosphere | TRSLQAAAEQQNSGGALKGHVFILSYETRFERGAAMETFTLIEDKGSWLLARYLVNSTNL |
| Ga0207662_100446201 | 3300025918 | Switchgrass Rhizosphere | SLHSATEQQNSGGVLKGHVFILLYETRFERGDGMETFTLIEESGQWRLARYFVNSTALK |
| Ga0207662_110930121 | 3300025918 | Switchgrass Rhizosphere | LKGHVYILTYQTRFERGDGMETFTLIEENGRWLLARYFVNSTALT |
| Ga0207650_106133431 | 3300025925 | Switchgrass Rhizosphere | SGGQLKGRAFIISYKTKFEHGEAMETFTLIEENGRWLLARYLVNSTALK |
| Ga0207659_112272662 | 3300025926 | Miscanthus Rhizosphere | KVETRSLHSATEQQNSGGALKGHVYILSYQTRFERGDGMETFTLVEQNDRWLLARYLVNSTALG |
| Ga0207686_110447902 | 3300025934 | Miscanthus Rhizosphere | SATEQQNSGGPMKGRAFIVAYRTKFQNGEGMETFTLVERDGHWQLARYFVNSTALK |
| Ga0207709_108006851 | 3300025935 | Miscanthus Rhizosphere | KVESVAVHSATEQQNSGGQLKGHAFIITYQTKFERAEAMETFTLIEENGHWMLARYLVNSTALQ |
| Ga0207691_103498321 | 3300025940 | Miscanthus Rhizosphere | LKGHVFILSYETNFERGEGMETFTLIEENGHWLLARYFVNSTALQ |
| Ga0207689_114037772 | 3300025942 | Miscanthus Rhizosphere | ALKGHVYILSYETHFERGDAMETFTLIEENGRWLLARYFVNSTALK |
| Ga0207651_103238142 | 3300025960 | Switchgrass Rhizosphere | TLHSAAEQQNSGGALKGHVYILTYQTRFERGEAMETFTLIEENGRWKLARYLVNSTALK |
| Ga0207677_117351622 | 3300026023 | Miscanthus Rhizosphere | SLQAAAEQQNSGGALKGHVFILSYETRFERGAAMETFTLIEDKGSWLLARYLVNSTNLK |
| Ga0207641_110252232 | 3300026088 | Switchgrass Rhizosphere | NAAAEQQNSGGLLKGHVFILSYETHFERGDGMENFTLIEENGRWALARYFVNSTALK |
| Ga0207641_120723182 | 3300026088 | Switchgrass Rhizosphere | QNSGGPLKGRAFIVTYQTKFELGEAMETFTLVEENGRWKLARYLVNSTALK |
| Ga0207648_104556391 | 3300026089 | Miscanthus Rhizosphere | ATEQQNSSGQMKGHVFIITYQSKFERGEGMETFTLIEENGRWKLARYLVNSTALK |
| Ga0207674_110444921 | 3300026116 | Corn Rhizosphere | SRSLNAAAEQQNSGGPLKGHVFILSYETRFERGSGMETFTLIEENGRWLLARYLVNSTDL |
| Ga0207675_1011407021 | 3300026118 | Switchgrass Rhizosphere | HSATEQQNSGGALKGNVYIVAYQTKFELGEGMETYTLVERNGHWLLARYLVNSTALNQ |
| Ga0209438_11639071 | 3300026285 | Grasslands Soil | KVESRVLHSAIEQDNSGGALKGNAFIVVYQTKFERGEAMETFTLTKQNGRWMLARYLVNSTALK |
| Ga0208475_10113361 | 3300027018 | Soil | TATEQNNSGGPLQGRAFILSYQTKFERGEAMETFTVVEQGGQWRLARYLVNSTALK |
| Ga0209701_105524032 | 3300027862 | Vadose Zone Soil | SATEEPNSGGALKGHAFIVTYQTKFERGEGMETFTLIEQNGRWVLARYLATSTALK |
| Ga0307497_103834411 | 3300031226 | Soil | QQNSGGQLKGHAFIVTYQTKFERGEAMETFTLVEENGHWLLARYLVNSTALQ |
| Ga0310813_108000771 | 3300031716 | Soil | GALKGHVYILSYQTRFERGEAMETFTLIEENGRWRLARYLVNSTALTK |
| Ga0307407_104936772 | 3300031903 | Rhizosphere | SATEQENSGGALKGHVYILRYETRFERGEGMETFTLVEQDGRWLLARYFVNSTALQ |
| Ga0214473_100678927 | 3300031949 | Soil | QQNSSGLLKGRAYIVTYRTKFQNGEGMETFTLVEREGRWLLVRYFVNSTALK |
| Ga0307409_1005712952 | 3300031995 | Rhizosphere | SATRQENSGGVLKGHVFILSYETHFERGDGMETFTLIEENGRWLLARYFVNSTALK |
| Ga0307416_1019083191 | 3300032002 | Rhizosphere | NSATEQQNSGGALKGHVFILSYETNFERGEGMETFTLIEENGQWLLARYFVNSTALK |
| Ga0310897_103778101 | 3300032003 | Soil | AEQQNSGGVLKGHVYILSYQTRFERGDGMETFTLIEENGRWRLARYFVNSTALQ |
| Ga0307470_119475722 | 3300032174 | Hardwood Forest Soil | TNGALSGHSFVLMYETRFERGNGMETFTIIERKGHWLVARYFVNSMALE |
| Ga0310896_108839141 | 3300032211 | Soil | VENRSLHTVNEQRNSGGPLQGHVFIVTYQTKFEQGQGMEWFTLIEEDNRWALARYLVNSTALR |
| Ga0310810_103237452 | 3300033412 | Soil | KGHAFIITYQTKFERGEAMETFTVIEENGRWKLARYLVSSTGLK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |