Metagenome / Metatranscriptome Family F089069

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F089069
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	47 residues
Representative Sequence	MPAELQAIHRYVVETPVLEAVTEEIRAVVETVWPELISKLPPKL
Number of Associated Samples	76
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	45.37 %
% of genes near scaffold ends (potentially truncated)	55.96 %
% of genes from short scaffolds (< 2000 bps)	97.25 %
Associated GOLD sequencing projects	72
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.47

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (75.229 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (41.284 % of family members)
Environment Ontology (ENVO)	Unclassified (30.275 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (48.624 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 48.61% β-sheet: 0.00% Coil/Unstructured: 51.39%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.47
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.47
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF14235	DUF4337	4.59
PF01068	DNA_ligase_A_M	2.75
PF13545	HTH_Crp_2	1.83
PF05532	CsbD	1.83
PF03631	Virul_fac_BrkB	1.83
PF02518	HATPase_c	0.92
PF13649	Methyltransf_25	0.92
PF13419	HAD_2	0.92
PF00856	SET	0.92
PF00872	Transposase_mut	0.92
PF02735	Ku	0.92
PF04392	ABC_sub_bind	0.92
PF13565	HTH_32	0.92
PF00239	Resolvase	0.92
PF00072	Response_reg	0.92
PF09339	HTH_IclR	0.92
PF03401	TctC	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	2.75
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	2.75
COG1295	Uncharacterized membrane protein, BrkB/YihY/UPF0761 family (not an RNase)	Function unknown [S]	1.83
COG3237	Uncharacterized conserved protein YjbJ, UPF0337 family	Function unknown [S]	1.83
COG1273	Non-homologous end joining protein Ku, dsDNA break repair	Replication, recombination and repair [L]	0.92
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.92
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	0.92
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.92
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.92
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.23 %
All Organisms	root	All Organisms	24.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.23 %
cellular organisms	root	All Organisms → cellular organisms	24.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.23 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	24.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.23 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	18.35 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.92 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.23 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	16.51 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.92 %
Chlamydiae	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Chlamydiae	0.92 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.23 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	9.17 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	2.75 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.92 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.92 %
Chlamydiae	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Chlamydiae	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.23 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	7.34 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.75 %
Oxalobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae	0.92 %
Hyphomicrobiales incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis	0.92 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.92 %
Chlamydiae	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Chlamydiae	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.23 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	6.42 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.75 %
unclassified Oxalobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → unclassified Oxalobacteraceae	0.92 %
Pseudorhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes	0.92 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.92 %
Chlamydiae	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Chlamydiae	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.23 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	3.67 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.75 %
Pseudorhodoplanes sinuspersici	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes → Pseudorhodoplanes sinuspersici	0.92 %
Oxalobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → unclassified Oxalobacteraceae → Oxalobacteraceae bacterium	0.92 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.92 %
Chlamydiae	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Chlamydiae	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.23 %
Bradyrhizobium sp. C-145	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. C-145	3.67 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.75 %
Pseudorhodoplanes sinuspersici	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes → Pseudorhodoplanes sinuspersici	0.92 %
Oxalobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → unclassified Oxalobacteraceae → Oxalobacteraceae bacterium	0.92 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.92 %
Chlamydiae	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Chlamydiae	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090002\|CNA_F7QKVOU01AQZEE	Not Available	509	Open in IMG/M
3300000956\|JGI10216J12902_118069236	Not Available	908	Open in IMG/M
3300004114\|Ga0062593_101944024	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	651	Open in IMG/M
3300005329\|Ga0070683_100359796	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1386	Open in IMG/M
3300005338\|Ga0068868_100196457	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1680	Open in IMG/M
3300005339\|Ga0070660_101115034	Not Available	668	Open in IMG/M
3300005347\|Ga0070668_102240422	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. C-145	505	Open in IMG/M
3300005455\|Ga0070663_101642848	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	573	Open in IMG/M
3300005564\|Ga0070664_100476085	Not Available	1149	Open in IMG/M
3300006237\|Ga0097621_101699267	Not Available	601	Open in IMG/M
3300006791\|Ga0066653_10384497	Not Available	716	Open in IMG/M
3300009094\|Ga0111539_10271560	All Organisms → cellular organisms → Bacteria	1974	Open in IMG/M
3300009098\|Ga0105245_11222360	Not Available	799	Open in IMG/M
3300009100\|Ga0075418_11153531	Not Available	839	Open in IMG/M
3300009147\|Ga0114129_10088825	All Organisms → cellular organisms → Bacteria	4284	Open in IMG/M
3300009147\|Ga0114129_10969601	Not Available	1073	Open in IMG/M
3300009174\|Ga0105241_10771639	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. C-145	883	Open in IMG/M
3300009176\|Ga0105242_11484800	Not Available	708	Open in IMG/M
3300009553\|Ga0105249_11813887	Not Available	683	Open in IMG/M
3300009553\|Ga0105249_13470568	Not Available	507	Open in IMG/M
3300010371\|Ga0134125_10985268	Not Available	925	Open in IMG/M
3300010399\|Ga0134127_11366793	Not Available	779	Open in IMG/M
3300011003\|Ga0138514_100094962	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	643	Open in IMG/M
3300012212\|Ga0150985_102840033	Not Available	551	Open in IMG/M
3300012212\|Ga0150985_104277738	Not Available	886	Open in IMG/M
3300012212\|Ga0150985_105700024	Not Available	765	Open in IMG/M
3300012212\|Ga0150985_105725759	Not Available	639	Open in IMG/M
3300012212\|Ga0150985_107066612	Not Available	776	Open in IMG/M
3300012212\|Ga0150985_108543417	Not Available	668	Open in IMG/M
3300012212\|Ga0150985_110562906	Not Available	919	Open in IMG/M
3300012212\|Ga0150985_111136145	Not Available	1037	Open in IMG/M
3300012212\|Ga0150985_123038872	Not Available	742	Open in IMG/M
3300012469\|Ga0150984_101725658	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes → Pseudorhodoplanes sinuspersici	1098	Open in IMG/M
3300012469\|Ga0150984_108944536	Not Available	567	Open in IMG/M
3300012469\|Ga0150984_110417873	All Organisms → cellular organisms → Bacteria	530	Open in IMG/M
3300012469\|Ga0150984_111659467	Not Available	772	Open in IMG/M
3300012469\|Ga0150984_113613387	Not Available	1228	Open in IMG/M
3300012469\|Ga0150984_114220268	Not Available	658	Open in IMG/M
3300012469\|Ga0150984_119414764	Not Available	601	Open in IMG/M
3300012939\|Ga0162650_100022202	Not Available	921	Open in IMG/M
3300012951\|Ga0164300_10157025	Not Available	1072	Open in IMG/M
3300012951\|Ga0164300_10260171	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	886	Open in IMG/M
3300012955\|Ga0164298_10825168	Not Available	666	Open in IMG/M
3300012955\|Ga0164298_11672896	Not Available	504	Open in IMG/M
3300012958\|Ga0164299_10688633	Not Available	713	Open in IMG/M
3300012960\|Ga0164301_11612063	Not Available	539	Open in IMG/M
3300012961\|Ga0164302_10085509	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1695	Open in IMG/M
3300012961\|Ga0164302_10691699	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	754	Open in IMG/M
3300012961\|Ga0164302_10764476	Not Available	724	Open in IMG/M
3300012985\|Ga0164308_12261515	Not Available	506	Open in IMG/M
3300012987\|Ga0164307_11878179	Not Available	508	Open in IMG/M
3300012989\|Ga0164305_11114308	Not Available	679	Open in IMG/M
3300013306\|Ga0163162_11010530	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. C-145	940	Open in IMG/M
3300013306\|Ga0163162_11334697	Not Available	815	Open in IMG/M
3300013306\|Ga0163162_11945153	All Organisms → cellular organisms → Bacteria → PVC group → Chlamydiae	673	Open in IMG/M
3300014326\|Ga0157380_12138276	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	623	Open in IMG/M
3300014745\|Ga0157377_10214905	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1228	Open in IMG/M
3300015372\|Ga0132256_102265312	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → unclassified Oxalobacteraceae → Oxalobacteraceae bacterium	647	Open in IMG/M
3300015373\|Ga0132257_100761675	Not Available	1206	Open in IMG/M
3300015374\|Ga0132255_102116032	Not Available	857	Open in IMG/M
3300017965\|Ga0190266_10717283	Not Available	627	Open in IMG/M
3300018054\|Ga0184621_10205780	Not Available	705	Open in IMG/M
3300018054\|Ga0184621_10211533	Not Available	694	Open in IMG/M
3300018061\|Ga0184619_10026944	All Organisms → cellular organisms → Bacteria	2398	Open in IMG/M
3300018067\|Ga0184611_1142316	Not Available	847	Open in IMG/M
3300018469\|Ga0190270_10685293	Not Available	1014	Open in IMG/M
3300018469\|Ga0190270_10876574	Not Available	913	Open in IMG/M
3300018469\|Ga0190270_13080859	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	527	Open in IMG/M
3300019269\|Ga0184644_1114009	Not Available	686	Open in IMG/M
3300019867\|Ga0193704_1034800	Not Available	1011	Open in IMG/M
3300019886\|Ga0193727_1169164	Not Available	574	Open in IMG/M
3300020004\|Ga0193755_1151545	Not Available	703	Open in IMG/M
3300021082\|Ga0210380_10374915	Not Available	650	Open in IMG/M
3300022756\|Ga0222622_10935018	Not Available	636	Open in IMG/M
3300025919\|Ga0207657_10934212	Not Available	667	Open in IMG/M
3300025972\|Ga0207668_10895956	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. C-145	789	Open in IMG/M
3300026023\|Ga0207677_11677799	Not Available	589	Open in IMG/M
3300026067\|Ga0207678_11410618	Not Available	616	Open in IMG/M
3300027873\|Ga0209814_10325780	Not Available	670	Open in IMG/M
3300027903\|Ga0209488_10558602	Not Available	834	Open in IMG/M
3300028380\|Ga0268265_11041320	Not Available	810	Open in IMG/M
3300028711\|Ga0307293_10063041	Not Available	1160	Open in IMG/M
3300028717\|Ga0307298_10037746	Not Available	1301	Open in IMG/M
3300028717\|Ga0307298_10138966	Not Available	702	Open in IMG/M
3300028717\|Ga0307298_10232857	Not Available	545	Open in IMG/M
3300028720\|Ga0307317_10026361	All Organisms → cellular organisms → Bacteria → Proteobacteria	1797	Open in IMG/M
3300028721\|Ga0307315_10042779	Not Available	1243	Open in IMG/M
3300028754\|Ga0307297_10386217	Not Available	516	Open in IMG/M
3300028755\|Ga0307316_10040765	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1541	Open in IMG/M
3300028768\|Ga0307280_10339072	Not Available	553	Open in IMG/M
3300028784\|Ga0307282_10109113	Not Available	1290	Open in IMG/M
3300028793\|Ga0307299_10046552	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1595	Open in IMG/M
3300028796\|Ga0307287_10407581	Not Available	511	Open in IMG/M
3300028807\|Ga0307305_10100989	Not Available	1333	Open in IMG/M
3300028810\|Ga0307294_10370574	Not Available	533	Open in IMG/M
3300028810\|Ga0307294_10422648	Not Available	504	Open in IMG/M
3300028875\|Ga0307289_10074529	Not Available	1372	Open in IMG/M
3300028875\|Ga0307289_10122410	All Organisms → cellular organisms → Bacteria	1066	Open in IMG/M
3300028885\|Ga0307304_10342662	Not Available	667	Open in IMG/M
3300028885\|Ga0307304_10418666	Not Available	607	Open in IMG/M
3300028885\|Ga0307304_10573131	Not Available	521	Open in IMG/M
3300030902\|Ga0308202_1058901	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	721	Open in IMG/M
3300030988\|Ga0308183_1120836	Not Available	618	Open in IMG/M
3300031091\|Ga0308201_10126600	Not Available	772	Open in IMG/M
3300031092\|Ga0308204_10032677	Not Available	1165	Open in IMG/M
3300031092\|Ga0308204_10116243	Not Available	756	Open in IMG/M
3300031092\|Ga0308204_10132518	Not Available	722	Open in IMG/M
3300031740\|Ga0307468_102469155	Not Available	508	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	56.88%
Host-Associated	Host-Associated	43.12%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	50.46%
Plants	Host-Associated → Plants	43.12%
Aquatic	Environmental → Aquatic	6.42%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	48.62%
Rhizosphere	Host-Associated → Plants → Rhizosphere	24.77%
Rhizoplane	Host-Associated → Plants → Rhizoplane	17.43%
Sediment	Environmental → Aquatic → Sediment	4.59%
Freshwater	Environmental → Aquatic → Freshwater	1.83%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	1.83%
Roots	Host-Associated → Plants → Roots	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	47.71%
Soil	Host-Associated → Plants → Rhizosphere → Soil	13.76%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	11.01%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	11.01%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	6.42%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.59%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.83%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	1.83%
Loam	Environmental → Terrestrial → Soil → Loam	0.92%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	44.04%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	13.76%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	11.01%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	11.01%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	6.42%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.59%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.83%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.83%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	1.83%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.92%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.92%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	41.28%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	8.26%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	6.42%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.59%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	4.59%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.67%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.75%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.83%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.83%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	1.83%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.83%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.92%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.92%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.92%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.92%
Quercus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Quercus Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.92%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090002	Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - CNA	Host-Associated	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300011003	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t9i015	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012939	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t1i015	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018067	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300019269	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019867	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3m1	Environmental	Open in IMG/M
3300019886	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2	Environmental	Open in IMG/M
3300020004	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2	Environmental	Open in IMG/M
3300021082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_coex redo	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300028717	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_158	Environmental	Open in IMG/M
3300028720	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_357	Environmental	Open in IMG/M
3300028721	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_355	Environmental	Open in IMG/M
3300028754	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_157	Environmental	Open in IMG/M
3300028755	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356	Environmental	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028796	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300028810	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_151	Environmental	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300030902	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_356 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030988	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_157 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031091	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_355 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031092	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_367 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
CNA_00643210	2088090002	Quercus Rhizosphere	LQAIHRYVIDTPALKTVTEEIRAVVETVWPELISKLPPKP
JGI10216J12902_1180692361	3300000956	Soil	PFMPAELQMIHRYVVETPVLETVTDEIRTVVETLWPELIAKLPPRTPVQD*
Ga0062593_1019440242	3300004114	Soil	RVIDGKLVMPSELEAIHRHVVETPVLKVVTEEIREVVETVWPELISKLPPKP*
Ga0070683_1003597961	3300005329	Corn Rhizosphere	MPAELQAIHRYVVETPVLKVVTEEIRAVVETVWPELISKLPPKPRRDAAGGG*
Ga0068868_1001964573	3300005338	Miscanthus Rhizosphere	MPAELQAIHRYVVETPVLKVVTEEIRAVVETVWPELISKLPPKPRPDATGGG*
Ga0070660_1011150341	3300005339	Corn Rhizosphere	MPAELQAIHRYVTETPVLEAVTEEIRAVVETVWPELISKLPPKT*
Ga0070668_1022404222	3300005347	Switchgrass Rhizosphere	IRRYVVETPVLNAVTAEIREVVESVWPELISKLPPRFDRGERN*
Ga0070663_1016428482	3300005455	Corn Rhizosphere	FPYEPRVVGGKLLMPAELQAIRRYVVETPVLNAVTAEIREVVESVWPELISKLPPRFDRGERN*
Ga0070664_1004760852	3300005564	Corn Rhizosphere	MSAELEAIHRYVTETPVLEAVTDEIRAVVETVWPELISKLPPKF*
Ga0068858_1019381441	3300005842	Switchgrass Rhizosphere	YEPRVIGGKMTMPAELQAIHRYVVETPVLENVTEEIRAVVEMVWP*
Ga0097621_1016992673	3300006237	Miscanthus Rhizosphere	LQAIHRYVVETPVLKAVTEEIRAVVETVWPELMSKLPPKPRPDATGGG*
Ga0066653_103844971	3300006791	Soil	MPAELQLIHRYLVETPVLEAVTDEIRAVVETVWPELISKLPPKF*
Ga0111539_102715604	3300009094	Populus Rhizosphere	MPAELQAIHRYVVETPVLEDVTEEIRAAVETVWPELISKLPPRP*
Ga0105245_112223601	3300009098	Miscanthus Rhizosphere	MPAELQTIHRYVVETPVLEALTDEIRAVVETVWLELISKLPPKT*
Ga0075418_111535312	3300009100	Populus Rhizosphere	STPRVVGGKLITSAELHVIHRYVVETPILEEVTEEIRAVVETVWPELISKLPPKS*
Ga0114129_100888256	3300009147	Populus Rhizosphere	MPAELQAIHRYVVETPVLETVTDEIRAVVETVWPELISK
Ga0114129_109696011	3300009147	Populus Rhizosphere	RVVGGKLITSAELHVIHRYVVETPILEEVTEEIRAVVETVWPELISKLPPKS*
Ga0105241_107716391	3300009174	Corn Rhizosphere	VGGKLLMPAELQAIRRYVVETPVLNAVTAEIREVVESVWPELISKLPPRFDRGERN*
Ga0105242_114848002	3300009176	Miscanthus Rhizosphere	MPAELQTIHRYVVETPVLEALTDEIRAVVETVWPELISKLPPKT*
Ga0105249_118138872	3300009553	Switchgrass Rhizosphere	MTPAELQAIHRYVVATSILEEVTEEIRAVVETVWPELISKLPPKP*
Ga0105249_134705681	3300009553	Switchgrass Rhizosphere	QAIHVYVVETPVLEDVTEEIRAAVETFWPELKSKLPPRAG*
Ga0134125_109852681	3300010371	Terrestrial Soil	MPAELQAIRRYVVETPVLNAVTEEIRAVVETVWPELKSKLPPTP*
Ga0134127_113667933	3300010399	Terrestrial Soil	MPAELQTIHRYVVETPVLEALTDEIRAVVETVWPELISKLPPKI*
Ga0138514_1000949622	3300011003	Soil	MMMPAELQAIHRYVLETPVLENVTEEIRAVIETVWPELLSKLPPKA*
Ga0150985_1028400331	3300012212	Avena Fatua Rhizosphere	KLLMPAELQAIHRYVIDTPALKTVTEEMRAVVETVWPELRSKLPPKP*
Ga0150985_1042777382	3300012212	Avena Fatua Rhizosphere	MPAELQVIHRYVIETPVLKAVTEELREVVETVWPELISKLPPKP*
Ga0150985_1057000242	3300012212	Avena Fatua Rhizosphere	MPAELQAIHRYVVETPVLKTVTEEMRAVVETVWPELASKLPPKP*
Ga0150985_1057257591	3300012212	Avena Fatua Rhizosphere	IHRYLVETPVLETVTDEIRAAVETIWPELISKLPPRL*
Ga0150985_1070666121	3300012212	Avena Fatua Rhizosphere	MPAELQAIHRYVVETPVLEAVTDEIRAVVETLWPELISKLPPKS*
Ga0150985_1085434174	3300012212	Avena Fatua Rhizosphere	MPAELQAIHRYVVETRVLEVVTDEVRAAVETIWPELISKLPPKL*
Ga0150985_1105629061	3300012212	Avena Fatua Rhizosphere	MPAELQAIHRYVTETPVLEAVTEDIRAVVETVWPELISKLPPKL*
Ga0150985_1111361452	3300012212	Avena Fatua Rhizosphere	MPAELQAIHRYVIDTPLLKTVTEEIRAVVETVLA*
Ga0150985_1230388722	3300012212	Avena Fatua Rhizosphere	MPAELQTIHRYVVETPVLEAVTDEIRAVVETVWPELIAKLPPKI*
Ga0150984_1017256582	3300012469	Avena Fatua Rhizosphere	RQRFPYEPRVVGGKLLMPAELQAIHRYVVETPVLKTVTEEIREVVETVWPELISKLPPRS
Ga0150984_1089445362	3300012469	Avena Fatua Rhizosphere	QAIHRYVVETPVLEVVTDEIRAVVETVWPELKSKLPPKP*
Ga0150984_1104178731	3300012469	Avena Fatua Rhizosphere	HRYVVETPVLEVVTDEIRAVVETVWPELKSKLPPKP*
Ga0150984_1116594671	3300012469	Avena Fatua Rhizosphere	MPAELQAIHRYVIDTPLLKTVTEEIRAVVETVWPELISKLPPKPRRDAAGGG*
Ga0150984_1136133874	3300012469	Avena Fatua Rhizosphere	RFPYEPRVVGGKLFMPAELQVIHRYVVETPDLKVVTEELRAVVETVWPELISKLPPKS*
Ga0150984_1142202681	3300012469	Avena Fatua Rhizosphere	PRVVGGRLLMPAELQAIRRYVVETPVLKTVTEEIRAVVETVWPELRSKLPPMS*
Ga0150984_1194147642	3300012469	Avena Fatua Rhizosphere	MPAELQAIRRYVVETPVLNAVTEEIRAVVETVWPELISKLPPKLRDVP*
Ga0162650_1000222021	3300012939	Soil	MIHRYVVETPVLDSVTEELREVVEAVWPEMIAKLPPKT*
Ga0164300_101570252	3300012951	Soil	MPAELQAIYRYVVETPVLKTVTEEIRTVVETVWPELRSKLPPKP*
Ga0164300_102601711	3300012951	Soil	MPAELQAIHRYVTETPVLEAVTEEIRAVVETVWPELISKLPPKL*
Ga0164298_108251681	3300012955	Soil	MPAELQAIHRYVIETPVLEEVTEEIRAVVETVWPELLSKLPPKP*
Ga0164298_116728962	3300012955	Soil	MPAELQAIHRYVVETLVLKTVTEEIRAVVETVWPELISKLPPKPRPDATGGG*
Ga0164299_106886331	3300012958	Soil	MPAELQAIHRYVVETPVFEEITEEIRAVVETVWPELLSKLPPKP*
Ga0164301_116120632	3300012960	Soil	VGGKLLMPAELQAIHRYVVETPVLENVTEEIRAVVHAVWPEFISKLPPKS*
Ga0164302_100855094	3300012961	Soil	FPYEPRVIGGKLLMPAELQAIHRYVIDTPALKTVTEEIRAVVETVWPELISKLPPKP*
Ga0164302_106916993	3300012961	Soil	MPAELQAIHRYVVETPVLEEVTEEIRAVVETVWPELLSKLPPKR*
Ga0164302_107644762	3300012961	Soil	MPAELQAIYRYVVETPVLKTVTEEIRAVVETVWPELRSKLPPKP*
Ga0164308_122615151	3300012985	Soil	AIRRYVVETPVLAVTEEIRAVVETVWPELISKLPPKLRDVP*
Ga0164307_118781791	3300012987	Soil	MPAELQAIHRYVIETPVLEEVTEEIRAVVETVWPELLSKLPPKR*
Ga0164305_111143082	3300012989	Soil	MPAELQAIHRYVTETPVLEAVTEEIRAVVETVWPELISKLPPEL*
Ga0163162_110105302	3300013306	Switchgrass Rhizosphere	MPAELQAIRRYVVETPVLNAVTAEIREVVESVWPELISKLPPRFDRGERN*
Ga0163162_113346971	3300013306	Switchgrass Rhizosphere	RQRFPYEPRVVGGRLLMPAELQAIHRYVVETPVLKTVTEEIRAVVETVWPELRSKLPPKP
Ga0163162_119451532	3300013306	Switchgrass Rhizosphere	PYESRVVGGRLLMPAELQAIHRYVTETPVLEAVTEEIRAVVETVWPELISKLPPKL*
Ga0157380_121382761	3300014326	Switchgrass Rhizosphere	FPYEPRVIGGKLLMPAELQAIHRYVVETPVLKVVTEEIRAVVETVWPELISKLPPKPRPDATGGG*
Ga0157377_102149052	3300014745	Miscanthus Rhizosphere	MPAELQAIHRYVVETPVLEAVTEEIRAVVETVWPELISKLPPRR*
Ga0132256_1022653121	3300015372	Arabidopsis Rhizosphere	FPYEPRVVGGKLLMPAELQAIHRYVVETPVLEDVTEEIRAAVETVWPELISKLPPRP*
Ga0132257_1007616754	3300015373	Arabidopsis Rhizosphere	MPAELQAIHRYVTETPVLEAVTEEIRAVVETVWPELISKLPPKR*
Ga0132255_1021160321	3300015374	Arabidopsis Rhizosphere	MPAELQAIHRYVVETPVLETVTDEIRAVVETVWPELISKLPPKL*
Ga0190266_107172831	3300017965	Soil	PAELQTIHRYVLETPVLENVTDEIRAVVKTVWPELMSKLPPKA
Ga0184621_102057802	3300018054	Groundwater Sediment	GRLLMPAELQAIHRYVTETPVLEAVTEEIRAVVETVWPELISKLPPKL
Ga0184621_102115332	3300018054	Groundwater Sediment	MPAELQAIHRYVVETPVLKTVTEEIRAVVETVWPDLISKLPPKPWD
Ga0184619_100269441	3300018061	Groundwater Sediment	RVVGGKLLMPAELQAIHRYVVETPVLEAVTEEIRAVVETIWPELISKLPPKP
Ga0184611_11423161	3300018067	Groundwater Sediment	AIHRYVVETPVLEAVTEEIRAVVETVWPELISKLPPKP
Ga0190270_106852932	3300018469	Soil	VVGGKLMMPAELQAIHRYVIEKPVLENVTEEIRAVVETVWPELM
Ga0190270_108765741	3300018469	Soil	MMPAELQAIHRHVVETPVLETVTEEIRAVIETVWPELISKLPPRAG
Ga0190270_130808591	3300018469	Soil	MPAELQAIHRYVLETPVLEAVTEEMRAVVETVWPEL
Ga0184644_11140091	3300019269	Groundwater Sediment	DRRRFPYEPRVVGGKLLMPAQLQAIHRYVVETPILNAVTEEIRAVVETVWPELISKLPPK
Ga0193704_10348001	3300019867	Soil	HRYVVETPVLEAVTEEIRAVVETVWPELISKLPPKP
Ga0193727_11691642	3300019886	Soil	LMPAELQAIHRYVVETPVLKTVTEEIRAVVETVWPELISKLPPQP
Ga0193755_11515451	3300020004	Soil	MPAELQAIHRYVVETPVLKTVTEEIRAVVETVWPELISKLPPKP
Ga0210380_103749152	3300021082	Groundwater Sediment	EPRVVGGKLLMPAELQAIHRYVVETPVLEEVTEEIRAVVETVWPELRSKLPPKS
Ga0222622_109350182	3300022756	Groundwater Sediment	DRRRFPYEPRVVGGKLLMPAELQTIHRYVVETPVLKTVTEEIRAVVETVWPELVSKLPPK
Ga0207657_109342121	3300025919	Corn Rhizosphere	MPAELQAIHRYVVETPVLKVVTEEIRAVVETVWPELMSKLPPRR
Ga0207668_108959563	3300025972	Switchgrass Rhizosphere	QAIRRYVVETPVLNAVTAEIREVVESVWPELISKLPPRFDRGERN
Ga0207677_116777991	3300026023	Miscanthus Rhizosphere	RVIGGKLLMPAELQTIHRYVVETPVLEALTDEIRAVVETVWPELISKLPPKT
Ga0207678_114106181	3300026067	Corn Rhizosphere	MPAELQAIHRYVVETPVLKVVTEEIREVVETVWPELISKLPPKPRRDAAGGG
Ga0209814_103257801	3300027873	Populus Rhizosphere	RVVGGKLITSAELHVIHRYVVETPILEEVTEEIRAVVETVWPELISKLPPKR
Ga0209488_105586023	3300027903	Vadose Zone Soil	MPAELQAIHRYVVETPVLKTVTEEIREVVETVWPELISKLPPKP
Ga0268265_110413201	3300028380	Switchgrass Rhizosphere	RFPYEPRVIGGKLLMPAELQTIHRYVVETPVLEALTDEIRAVVETVWLELISKLPPKT
Ga0307293_100630411	3300028711	Soil	QAIHRYVVETPVLKTVTEEIRAVVETVWPELISKLPLKP
Ga0307298_100377461	3300028717	Soil	GGKLLMPAELQAIHRYVVETPVLKTVTEEIRAVVETVWPELISKLPPKP
Ga0307298_101389661	3300028717	Soil	MPAELQAIHRYVVETPILNVVTEEIRAAVETVWPELIS
Ga0307298_102328571	3300028717	Soil	MPAELQAIHRYVVETPVLEAVTEEIRAVVETVWPELISKLPPKL
Ga0307317_100263611	3300028720	Soil	IHRYVTETPVLEAVTEEIRAVVETVWPELISKLPPKL
Ga0307315_100427792	3300028721	Soil	KLLMPAELQAIHRYVVETPVLEAVTEEIRAVVETVWPEPISKLPPKP
Ga0307297_103862172	3300028754	Soil	ELQAIHRYVVETPVLEAVTEEIRAVVETVWPELISKLPPKP
Ga0307316_100407651	3300028755	Soil	LMPAELQAIHRYVVETPVLEAVTEEIRAVVETVWPELISKLPPKP
Ga0307280_103390722	3300028768	Soil	TGQKGRPQERKSPALPRVVGGRLLMPAELPPVLEAVTEEIRAVVETFWPELISKLPPKL
Ga0307282_101091132	3300028784	Soil	LLMPAELQAIHRYVVETPVLKTVTEEIRAVVETVWPELISKLPPKP
Ga0307299_100465522	3300028793	Soil	MPAELQAIHRYVVETPILNVVTEEIRAVVETVWPELISKLPPKP
Ga0307287_104075811	3300028796	Soil	PYEPRVVGGRLLMPAELQAIHRYVVETPVLEAVTEEIRAVVETVWPELISKLPPKP
Ga0307305_101009891	3300028807	Soil	GKLLMPAELQAIHRYVVETPVLEAVTEEIRAVVETVWPELISKLPPKP
Ga0307294_103705741	3300028810	Soil	LQAIHRYVVETPALKAVTEEIRAVVETVWPELISKLPPKL
Ga0307294_104226482	3300028810	Soil	IGGKLMMPAELQAIHRYVVETPILENITEEVRAVVETVWPELMSKLPPKA
Ga0307289_100745292	3300028875	Soil	MKGRPQERKSPALPRVVGGRLLMPAELPPVLEAVTEEIRAVVETFWPELISKLPPKL
Ga0307289_101224101	3300028875	Soil	AIHRYVVETPVLEAVTEEIRAVVETVWPELISKLPPQP
Ga0307304_103426623	3300028885	Soil	RLLMPAELQAIHRYVTETPVLEAVTEEIRAVVETVWPELISKLPPKL
Ga0307304_104186661	3300028885	Soil	MPAELQAIHRYVVETPVLKTVTEEIRAVVETVWPELRSKLPPKP
Ga0307304_105731311	3300028885	Soil	RVVGGKLLMPAELQAIHRYVVETPVLETVTEEIRAVVETVWPELISKLPPKP
Ga0308202_10589012	3300030902	Soil	MPAELQAIHRYVRETPVLEVVTEDIRAVVETVWPELISKLPPKL
Ga0308183_11208361	3300030988	Soil	MPAELQAIHRYVVETPVLEVVTEEIRAVVETVWPELISKLPPKR
Ga0308201_101266001	3300031091	Soil	MPAELQAIRRYVVETPVLNAVTEEIRAVVETVWPELISKLPPKLRYAP
Ga0308204_100326771	3300031092	Soil	FPYEPRVVGGKLLMPAELQAIHRYVVETPVLKTVTEEIRAVVETVWPELISKLPPKP
Ga0308204_101162432	3300031092	Soil	RRRFPYEPRVVGGKLLMPAELQAIHRYVVETPVLETVTEEIRAVVETVWPELISKLPPKP
Ga0308204_101325183	3300031092	Soil	FPYEPRVVGGKLLMPAELQAIHRYVVETPVLKTVTEEIRAVVETVWPELISKLPPKL
Ga0307468_1024691551	3300031740	Hardwood Forest Soil	IHRYVVEAPILENVTEEIRAVIETVWPELISKLPPKA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F089069

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences