NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334980_0000095

Scaffold Ga0334980_0000095


Overview

Basic Information
Taxon OID3300033816 Open in IMG/M
Scaffold IDGa0334980_0000095 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)41955
Total Scaffold Genes97 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)67 (69.07%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007691Metagenome / Metatranscriptome346Y
F010766Metagenome / Metatranscriptome299Y
F030765Metagenome184Y
F081245Metagenome / Metatranscriptome114Y
F099300Metagenome / Metatranscriptome103N
F102563Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0334980_0000095_22754_22876F030765GAGMDTEQNFDQEFSVEDITNAIVNQAKAEVKSRFGNKKRHRQ
Ga0334980_0000095_3163_3828F102563GGAGMLNTNGPDTQSNRPHKFFERYLDNDLDELAKFLEVKYQLIKDAQLRGVSTMENDEGFWLESGSLSTVKWREYNVFQLYHPSLHKLYSELSNTVKEACLYYGVDFEKQQYYVQGWFNINEAGNGKLNWHDHGAPGAPNFHGYYCVKAEPSTTYYRLFGDPNKEVANHNIDNRMIVSEMGHPHAQGDWDWPGSRITVAYDIQPLRSLLNAGKHTIEQHWIPLL
Ga0334980_0000095_32917_33069F007691N/AMNTINDLINEIYESNYSHLEFEENMGGEACDCHIHTTLNTIALYAGIEVE
Ga0334980_0000095_39205_39357F099300AGGMAMMKTLYTEITTCDLCYGTGWLYFGNETDFDTESCDCNPHQLFITKENN
Ga0334980_0000095_41239_41349F081245GGAMRDFVKNLELENYLADEQIDPLAKMLDELISKGEYK
Ga0334980_0000095_6251_6361F010766GAGMRIKIIRAVVKLLGYEWGGDKLNAPIWTVKEKKNKK

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