Scaffold Ga0334980

Basic Information
Taxon OID	3300033816 Open in IMG/M
Scaffold ID	Ga0334980_0000095 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300033816 Open in IMG/M

Scaffold ID

Ga0334980_0000095 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	41955
Total Scaffold Genes	97 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	67 (69.07%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

41955

Total Scaffold Genes

97 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

67 (69.07%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007691	Metagenome / Metatranscriptome	346	Y
F010766	Metagenome / Metatranscriptome	299	Y
F030765	Metagenome	184	Y
F081245	Metagenome / Metatranscriptome	114	Y
F099300	Metagenome / Metatranscriptome	103	N
F102563	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334980_0000095_22754_22876	F030765	GAG	MDTEQNFDQEFSVEDITNAIVNQAKAEVKSRFGNKKRHRQ
Ga0334980_0000095_3163_3828	F102563	GGAG	MLNTNGPDTQSNRPHKFFERYLDNDLDELAKFLEVKYQLIKDAQLRGVSTMENDEGFWLESGSLSTVKWREYNVFQLYHPSLHKLYSELSNTVKEACLYYGVDFEKQQYYVQGWFNINEAGNGKLNWHDHGAPGAPNFHGYYCVKAEPSTTYYRLFGDPNKEVANHNIDNRMIVSEMGHPHAQGDWDWPGSRITVAYDIQPLRSLLNAGKHTIEQHWIPLL
Ga0334980_0000095_32917_33069	F007691	N/A	MNTINDLINEIYESNYSHLEFEENMGGEACDCHIHTTLNTIALYAGIEVE
Ga0334980_0000095_39205_39357	F099300	AGG	MAMMKTLYTEITTCDLCYGTGWLYFGNETDFDTESCDCNPHQLFITKENN
Ga0334980_0000095_41239_41349	F081245	GGA	MRDFVKNLELENYLADEQIDPLAKMLDELISKGEYK
Ga0334980_0000095_6251_6361	F010766	GAG	MRIKIIRAVVKLLGYEWGGDKLNAPIWTVKEKKNKK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0334980_0000095

Overview

Ecosystem & Geography

Associated Families

Sequences