Basic Information | |
---|---|
Taxon OID | 3300033816 Open in IMG/M |
Scaffold ID | Ga0334980_0000095 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 41955 |
Total Scaffold Genes | 97 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 67 (69.07%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
Associated Families | 6 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F007691 | Metagenome / Metatranscriptome | 346 | Y |
F010766 | Metagenome / Metatranscriptome | 299 | Y |
F030765 | Metagenome | 184 | Y |
F081245 | Metagenome / Metatranscriptome | 114 | Y |
F099300 | Metagenome / Metatranscriptome | 103 | N |
F102563 | Metagenome / Metatranscriptome | 101 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0334980_0000095_22754_22876 | F030765 | GAG | MDTEQNFDQEFSVEDITNAIVNQAKAEVKSRFGNKKRHRQ |
Ga0334980_0000095_3163_3828 | F102563 | GGAG | MLNTNGPDTQSNRPHKFFERYLDNDLDELAKFLEVKYQLIKDAQLRGVSTMENDEGFWLESGSLSTVKWREYNVFQLYHPSLHKLYSELSNTVKEACLYYGVDFEKQQYYVQGWFNINEAGNGKLNWHDHGAPGAPNFHGYYCVKAEPSTTYYRLFGDPNKEVANHNIDNRMIVSEMGHPHAQGDWDWPGSRITVAYDIQPLRSLLNAGKHTIEQHWIPLL |
Ga0334980_0000095_32917_33069 | F007691 | N/A | MNTINDLINEIYESNYSHLEFEENMGGEACDCHIHTTLNTIALYAGIEVE |
Ga0334980_0000095_39205_39357 | F099300 | AGG | MAMMKTLYTEITTCDLCYGTGWLYFGNETDFDTESCDCNPHQLFITKENN |
Ga0334980_0000095_41239_41349 | F081245 | GGA | MRDFVKNLELENYLADEQIDPLAKMLDELISKGEYK |
Ga0334980_0000095_6251_6361 | F010766 | GAG | MRIKIIRAVVKLLGYEWGGDKLNAPIWTVKEKKNKK |
⦗Top⦘ |