Metagenome / Metatranscriptome Family F099300

Overview

Basic Information

• Family ID: F099300
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 103
• Average Sequence Length: 49 residues
• Representative Sequence: MGVMKELHLEITTCDLCYGTGWLYFGNSEDFDTESCDCNPHQLFITKENN
• Number of Associated Samples: 80
• Number of Associated Scaffolds: 103

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 85.44 %
• % of genes near scaffold ends (potentially truncated): 21.36 %
• % of genes from short scaffolds (< 2000 bps): 45.63 %
• Associated GOLD sequencing projects: 76
• AlphaFold2 3D model prediction: No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (78.641 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake (19.417 % of family members)
• Environment Ontology (ENVO): Unclassified (50.485 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline) (59.223 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 0.00%
  β-sheet: 34.00%
  Coil/Unstructured: 66.00%

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF06067	DUF932	8.74
PF08007	JmjC_2	0.97
PF05257	CHAP	0.97
PF01930	Cas_Cas4	0.97
PF01391	Collagen	0.97
PF13640	2OG-FeII_Oxy_3	0.97
PF03793	PASTA	0.97
PF01844	HNH	0.97
PF04860	Phage_portal	0.97
PF00512	HisKA	0.97
PF01464	SLT	0.97

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG1468	CRISPR/Cas system-associated exonuclease Cas4, RecB family	Defense mechanisms [V]	0.97
COG2850	Ribosomal protein L16 Arg81 hydroxylase, contains JmjC domain	Translation, ribosomal structure and biogenesis [J]	0.97

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.64 %
All Organisms	root	All Organisms	21.36 %

Level 2

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.64 %
Viruses	superkingdom	All Organisms → Viruses	20.39 %
cellular organisms	root	All Organisms → cellular organisms	0.97 %

Level 3

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.64 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	13.59 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	5.83 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.97 %

Level 4

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.64 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	13.59 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	5.83 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.97 %

Level 5

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.64 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	13.59 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	5.83 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.97 %

Level 6

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.64 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	13.59 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	5.83 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.97 %

Level 7

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.64 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	13.59 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	5.83 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.97 %

Level 8

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.64 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	13.59 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	5.83 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.97 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300000756|JGI12421J11937_10041754	Not Available	1554
3300001282|B570J14230_10010809	Not Available	3482
3300002382|B570J29648_106401	Not Available	601
3300002408|B570J29032_108808103	Not Available	514
3300002835|B570J40625_100025585	Not Available	9621
3300002835|B570J40625_100037028	Not Available	7404
3300002835|B570J40625_100048512	Not Available	6105
3300002835|B570J40625_100072996	Not Available	4527
3300002835|B570J40625_100109517	Not Available	3355
3300002835|B570J40625_100726885	Not Available	884
3300003395|JGI25917J50250_1011449	All Organisms → Viruses → Predicted Viral	2190
3300003413|JGI25922J50271_10011367	Not Available	2389
3300003413|JGI25922J50271_10014508	Not Available	2066
3300003413|JGI25922J50271_10083301	Not Available	686
3300004125|Ga0066182_10110077	Not Available	664
3300004126|Ga0066179_10219866	Not Available	536
3300004769|Ga0007748_11643920	Not Available	627
3300005517|Ga0070374_10051803	All Organisms → Viruses → Predicted Viral	2136
3300005517|Ga0070374_10203524	Not Available	1018
3300005517|Ga0070374_10385448	Not Available	705
3300005517|Ga0070374_10640116	Not Available	526
3300005527|Ga0068876_10199614	All Organisms → Viruses → Predicted Viral	1161
3300005582|Ga0049080_10247124	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	583
3300005662|Ga0078894_11245221	Not Available	628
3300005941|Ga0070743_10001960	Not Available	7750
3300005941|Ga0070743_10085497	All Organisms → Viruses → Predicted Viral	1064
3300006484|Ga0070744_10019481	All Organisms → Viruses → Predicted Viral	2016
3300006484|Ga0070744_10034559	All Organisms → Viruses → Predicted Viral	1493
3300007545|Ga0102873_1004543	Not Available	4321
3300007545|Ga0102873_1016358	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2288
3300007546|Ga0102874_1016232	All Organisms → Viruses → Predicted Viral	2446
3300007548|Ga0102877_1008408	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	3079
3300007553|Ga0102819_1097179	Not Available	501
3300007561|Ga0102914_1077814	Not Available	1039
3300007617|Ga0102897_1074516	Not Available	1061
3300007620|Ga0102871_1054715	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1171
3300007644|Ga0102902_1244675	Not Available	527
3300008107|Ga0114340_1036673	Not Available	3144
3300008108|Ga0114341_10021856	Not Available	7019
3300008108|Ga0114341_10036457	Not Available	3310
3300008108|Ga0114341_10514947	Not Available	537
3300008113|Ga0114346_1018938	All Organisms → Viruses → Predicted Viral	3735
3300008113|Ga0114346_1086212	All Organisms → Viruses → Predicted Viral	1470
3300008261|Ga0114336_1001877	Not Available	53018
3300008996|Ga0102831_1014925	Not Available	2691
3300009159|Ga0114978_10008678	Not Available	7959
3300009160|Ga0114981_10190285	Not Available	1127
3300009419|Ga0114982_1008524	Not Available	3704
3300009419|Ga0114982_1075110	All Organisms → Viruses → Predicted Viral	1051
3300010312|Ga0102883_1072577	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1008
3300010388|Ga0136551_1001759	Not Available	5469
3300010970|Ga0137575_10035649	Not Available	795
3300012017|Ga0153801_1001131	Not Available	5819
3300012666|Ga0157498_1000811	Not Available	5779
3300020048|Ga0207193_1025967	Not Available	7021
3300020141|Ga0211732_1246415	Not Available	3514
3300020151|Ga0211736_10418160	All Organisms → Viruses	4462
3300020160|Ga0211733_11250385	Not Available	754
3300020172|Ga0211729_10399697	Not Available	3358
3300020494|Ga0208326_100010	Not Available	10298
3300020507|Ga0208697_1001241	Not Available	4057
3300020524|Ga0208858_1043751	Not Available	605
3300020527|Ga0208232_1004082	Not Available	2474
3300020528|Ga0208224_1005719	Not Available	2064
3300020549|Ga0207942_1006298	Not Available	1690
3300020553|Ga0208855_1002205	Not Available	4224
3300021952|Ga0213921_1004748	All Organisms → Viruses → Predicted Viral	2819
3300021962|Ga0222713_10059779	All Organisms → Viruses → Predicted Viral	2868
3300022752|Ga0214917_10393364	Not Available	574
3300023174|Ga0214921_10004716	Not Available	19832
3300024343|Ga0244777_10001020	Not Available	20728
3300024343|Ga0244777_10901586	Not Available	516
3300024346|Ga0244775_10070386	Not Available	3000
3300024346|Ga0244775_10090739	Not Available	2604
3300024346|Ga0244775_10233693	Not Available	1535
3300024348|Ga0244776_10000889	Not Available	33467
3300024348|Ga0244776_10697326	Not Available	627
3300024856|Ga0256304_1087291	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	631
3300027236|Ga0208026_1007137	Not Available	1666
3300027244|Ga0208173_1012730	Not Available	1712
3300027304|Ga0208810_1040668	Not Available	1044
3300027563|Ga0209552_1000307	Not Available	15559
3300027581|Ga0209651_1000187	Not Available	22570
3300027631|Ga0208133_1093470	Not Available	704
3300027642|Ga0209135_1039315	All Organisms → Viruses → Predicted Viral	1680
3300027689|Ga0209551_1000118	Not Available	25124
3300027710|Ga0209599_10000200	Not Available	42280
3300027720|Ga0209617_10078726	All Organisms → Viruses → Predicted Viral	1349
3300027756|Ga0209444_10147032	Not Available	907
3300027782|Ga0209500_10008054	Not Available	6633
3300027804|Ga0209358_10127474	Not Available	1382
3300027804|Ga0209358_10567316	Not Available	505
3300028025|Ga0247723_1002001	Not Available	11324
3300028025|Ga0247723_1002291	Not Available	10322
3300031857|Ga0315909_10001330	Not Available	33381
3300032116|Ga0315903_10994395	Not Available	588
3300033816|Ga0334980_0000095	Not Available	41955
3300033993|Ga0334994_0031988	Not Available	3402
3300034066|Ga0335019_0008917	Not Available	6853
3300034093|Ga0335012_0050412	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2407
3300034105|Ga0335035_0626126	Not Available	565
3300034166|Ga0335016_0640419	Not Available	573
3300034200|Ga0335065_0038124	Not Available	3372

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	95.15%
Terrestrial	Environmental → Terrestrial	4.85%

Category

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	68.93%
Marine	Environmental → Aquatic → Marine	26.21%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	4.85%

Type

Habitat	Taxonomy	Distribution
Lentic	Environmental → Aquatic → Freshwater → Lentic	37.86%
Lake	Environmental → Aquatic → Freshwater → Lake	25.24%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	17.48%
Unclassified	Environmental → Aquatic → Marine → Unclassified	8.74%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	4.85%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	1.94%
Pond	Environmental → Aquatic → Freshwater → Pond	1.94%
River	Environmental → Aquatic → Freshwater → River	0.97%
Creek	Environmental → Aquatic → Freshwater → Creek	0.97%

Subtype

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	24.27%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	22.33%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	17.48%
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	14.56%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	8.74%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	4.85%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	1.94%
Unclassified	Environmental → Aquatic → Freshwater → Pond → Unclassified	1.94%
Hypolimnion	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion	0.97%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.97%
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	0.97%
Unclassified	Environmental → Aquatic → Freshwater → Creek → Unclassified	0.97%

Habitat

Habitat	Taxonomy	Distribution
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	19.42%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	17.48%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	13.59%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	8.74%
Estuarine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine	7.77%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	6.80%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	4.85%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	2.91%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface	2.91%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	1.94%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	1.94%
Pond Fresh Water	Environmental → Aquatic → Freshwater → Pond → Unclassified → Pond Fresh Water	1.94%
Deep Subsurface Sediment	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment	1.94%
Freshwater And Sediment	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment	0.97%
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	0.97%
Freshwater And Sediment	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment	0.97%
Freshwater, Surface Ice	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Surface Ice	0.97%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment	0.97%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	0.97%
Freshwater	Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater	0.97%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	0.97%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300000756	Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011	Environmental
3300001282	Freshwater microbial communities from Lake Mendota, WI - Practice 20APR2010 epilimnion	Environmental
3300002382	Freshwater microbial communities from Lake Mendota, WI - 26OCT2009 deep hole epilimnion	Environmental
3300002408	Freshwater microbial communities from Lake Mendota, WI, sample - 15JUL2010 deep hole epilimnion (Lake Mendota Combined assembly, ASSEMBLY_DATE=20140123)	Environmental
3300002835	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)	Environmental
3300003395	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.SN	Environmental
3300003413	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD	Environmental
3300004125	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SD (version 2)	Environmental
3300004126	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.DN (version 2)	Environmental
3300004769	Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (Metagenome Metatranscriptome)	Environmental
3300005517	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (version 4)	Environmental
3300005527	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG	Environmental
3300005582	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF	Environmental
3300005662	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)	Environmental
3300005941	Estuarine microbial communities from the Columbia River estuary, USA - metaG S.697	Environmental
3300006484	Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535	Environmental
3300007545	Estuarine microbial communities from the Columbia River estuary - metaG 1547B-3	Environmental
3300007546	Estuarine microbial communities from the Columbia River estuary - metaG 1547A-02	Environmental
3300007548	Estuarine microbial communities from the Columbia River estuary - metaG 1548B-3	Environmental
3300007553	Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.689	Environmental
3300007561	Estuarine microbial communities from the Columbia River estuary - metaG 1561A-3	Environmental
3300007617	Estuarine microbial communities from the Columbia River estuary - metaG 1554B-02	Environmental
3300007620	Estuarine microbial communities from the Columbia River estuary - metaG 1546C-02	Environmental
3300007644	Estuarine microbial communities from the Columbia River estuary - metaG 1555B-02	Environmental
3300008107	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA	Environmental
3300008108	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-C-NA	Environmental
3300008113	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NA	Environmental
3300008261	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-C-NA	Environmental
3300008996	Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.747	Environmental
3300009159	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG	Environmental
3300009160	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_MF_MetaG	Environmental
3300009419	Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT	Environmental
3300010312	Estuarine microbial communities from the Columbia River estuary - metaG 1549B-02	Environmental
3300010388	Freshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland - JEBV, may 2015	Environmental
3300010970	Freshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland - JEBV1, april 2016	Environmental
3300012017	Freshwater microbial communities from Central Basin Lake Erie, Ontario, Canada - Station 1208 - Top - Depth 1m	Environmental
3300012666	Freshwater microbial communities from Central Basin Lake Erie, Ontario, Canada - Station 1208 - Surface Ice version 2	Environmental
3300020048	Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915	Environmental
3300020141	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1	Environmental
3300020151	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1	Environmental
3300020160	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1	Environmental
3300020172	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1	Environmental
3300020494	Freshwater microbial communities from Lake Mendota, WI - 25SEP2008 deep hole epilimnion (SPAdes)	Environmental
3300020507	Freshwater microbial communities from Lake Mendota, WI - 12SEP2008 deep hole epilimnion (SPAdes)	Environmental
3300020524	Freshwater microbial communities from Lake Mendota, WI - 16NOV2012 deep hole epilimnion (SPAdes)	Environmental
3300020527	Freshwater microbial communities from Lake Mendota, WI - 24AUG2012 deep hole epilimnion (SPAdes)	Environmental
3300020528	Freshwater microbial communities from Lake Mendota, WI - 26OCT2009 deep hole epilimnion (SPAdes)	Environmental
3300020549	Freshwater microbial communities from Lake Mendota, WI - 12OCT2012 deep hole epilimnion (SPAdes)	Environmental
3300020553	Freshwater microbial communities from Lake Mendota, WI - 17MAY2012 deep hole epilimnion (SPAdes)	Environmental
3300021952	Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17 MG	Environmental
3300021962	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D	Environmental
3300022752	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB	Environmental
3300023174	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505	Environmental
3300024343	Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction	Environmental
3300024346	Whole water sample coassembly	Environmental
3300024348	0.2um to 3um size fraction coassembly	Environmental
3300024856	Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Yuk_RepA_8d (Metagenome Metatranscriptome)	Environmental
3300027236	Estuarine microbial communities from the Columbia River estuary - metaG 1554A-3 (SPAdes)	Environmental
3300027244	Estuarine microbial communities from the Columbia River estuary - metaG 1555C-02 (SPAdes)	Environmental
3300027304	Estuarine microbial communities from the Columbia River estuary - metaG 1560A-02 (SPAdes)	Environmental
3300027563	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SD (SPAdes)	Environmental
3300027581	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SN (SPAdes)	Environmental
3300027631	Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535 (SPAdes)	Environmental
3300027642	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.SD (SPAdes)	Environmental
3300027689	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SD (SPAdes)	Environmental
3300027710	Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)	Environmental
3300027720	Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB epilimnion July 2011 (SPAdes)	Environmental
3300027756	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.DN (SPAdes)	Environmental
3300027782	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)	Environmental
3300027804	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN (SPAdes)	Environmental
3300028025	Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC	Environmental
3300031857	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125	Environmental
3300032116	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA119	Environmental
3300033816	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005	Environmental
3300033993	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037	Environmental
3300034066	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087	Environmental
3300034093	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jun2014-rr0072	Environmental
3300034105	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME15May2014-rr0127	Environmental
3300034166	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Sep2012-rr0079	Environmental
3300034200	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jul2013-rr0190	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12421J11937_100417546	3300000756	Freshwater And Sediment	MGVMKELHLEITTCENCYGNGWLYFGNGEDFDTEACDCNPHQLFITKENN*
B570J14230_100108091	3300001282	Freshwater	MAKMKTLYTEIENCEQCYGQGWQFWAQGEDFDTESCDCNPHQLFIT
B570J29648_1064013	3300002382	Freshwater	YLMGVMKELHLEITTCELCYGTGWLHFGNSLDYDTESCDCNPHQLFITKENN*
B570J29032_1088081033	3300002408	Freshwater	MSKMKTLYTEIENCEQCYGQGWQFWAQGEDFDTESCDCNPHQLFITKE
B570J40625_10002558519	3300002835	Freshwater	MGVMKELHLEITTCELCYGTGWLHFGNSLDYDTESCDCNPHQLFITKENN*
B570J40625_10003702811	3300002835	Freshwater	MAKMKTLYTEIENCEQCYGQGWQFWAQGEDFDTESCDCNPHQLFITKENN*
B570J40625_1000485127	3300002835	Freshwater	MGTMKTLYTEIENCEKCYGQGWQFWAQGEDFDTESCDCNPHQLFITKENN*
B570J40625_1000729967	3300002835	Freshwater	MSKMKTLYTEIENCEQCYGQGWQFWAQGEDFDTESCDCNPHQLFITKENN*
B570J40625_1001095174	3300002835	Freshwater	MAKMKTLYTEITTCDLCYGTGWLYFGNGEDFDTESCDCNPHQLFITKEND*
B570J40625_1007268851	3300002835	Freshwater	MGKMKELHLDITTCDLCYGTGWLYFGNETDFDTESCDCNPHQLFITKENN*
JGI25917J50250_10114493	3300003395	Freshwater Lake	MGVMKELHLEITTCDLCYGTGWLHFGNSEDYDTESCDCNPHQLFITKEND*
JGI25922J50271_100113679	3300003413	Freshwater Lake	MGVMKELHLEITTCDLCYGTGWLHFGNSLDYDTENCDCNPHQLFITKENY*
JGI25922J50271_100145083	3300003413	Freshwater Lake	MGKMKELYSEIITCDLCFGTGWLFFGNGEDYDTESCTCNPHQLFITKEND*
JGI25922J50271_100833012	3300003413	Freshwater Lake	MGVMKELHLDITTCDLCYGVGWLYFGNGTDFDTESCDCNPHQLFITKENN*
Ga0066182_101100772	3300004125	Freshwater Lake	MGVMKTLYTEIENCEKCFGQGWQFWAQGEDFDTESCDCNPHQLFITKENY*
Ga0066179_102198663	3300004126	Freshwater Lake	LMGVMKELHLEITTCDLCYGTGWLHFGNETDFDTESCDCNPHQLFITKENN*
Ga0007748_116439202	3300004769	Freshwater Lake	MGVMKELHLEITTCDLCYGTGWLHFGTSEDYDTESCDCNPHQLFITKENN*
Ga0070374_100518032	3300005517	Freshwater Lake	MAKMKTLMTEIENCEQCYGQGWQFWAQGEDFDTESCDCNPHQLFITKENN*
Ga0070374_102035243	3300005517	Freshwater Lake	MGKMKELQLEITTCDLCYGTGWLYFGNETDFDTESCDCNPHQLFITKENN*
Ga0070374_103854482	3300005517	Freshwater Lake	MGKMKELQLDITTCDLCYGTGWLYFGNGIDFDTESCDCNPHQLFITKENN*
Ga0070374_106401163	3300005517	Freshwater Lake	MGVMKELHLEITTCDLCYGTGWLHFGNSEDYDTESCDCNPHQLFITKENN*
Ga0068876_101996143	3300005527	Freshwater Lake	MAKMKTLITEIENCEQCYGQGWQFWAQGEDFDTESCDCNPHQLFITKENN*
Ga0049080_102471242	3300005582	Freshwater Lentic	MGVMKELHLEITTCDLCYGTGWLHFGNSLDYDTENCDCNPHQLFITKEND*
Ga0078894_112452211	3300005662	Freshwater Lake	DLCYGTGWLFFGNGEDFDTESCDCNPHQLFITKENN*
Ga0070743_1000196013	3300005941	Estuarine	MGVMKTLYTEIENCEKCYGQGWQFWAQGEDFDTESCDCNPHQLFITKENN*
Ga0070743_100854972	3300005941	Estuarine	MGVMKELHLEITTCDLCYGTGWLHFGNSLDYDTENCDCNPHQLFITKENN*
Ga0070744_100194812	3300006484	Estuarine	MGVMKTLYTEIENCEKCFGQGWQFWAQGEDFDTESCDCNPHQLFITKENN*
Ga0070744_100345592	3300006484	Estuarine	MGVMKELHLEITTCELCYGTGWLHFGNSEDYDTESCDCNPHQLFITKENN*
Ga0102873_10045431	3300007545	Estuarine	IENCEKCYGQGWQFWAQGEDFDTESCDCNPHQLFITKENN*
Ga0102873_10163582	3300007545	Estuarine	MGKVKEMLAEITTCDLCYGSGWLFFGNGIDYDTESCDCNPHQLFITKEND*
Ga0102874_10162322	3300007546	Estuarine	MGKVKEMLAEITTCDLCYGSGWLFFGNGIDYDTESCDCNPHQLFTTKEAD*
Ga0102877_10084081	3300007548	Estuarine	MGKVKEMLAEITTCDLCYGSGWLFFGNGIDYDTESCDCNPHQLFTTKESD*
Ga0102819_10971792	3300007553	Estuarine	MKELHLEITTCDLCYGTGWLHFGNGIDFDTESCDCNPHQLFITKENN*
Ga0102914_10778145	3300007561	Estuarine	MKTLYTEIENCEKCYGQGWQFWAQGEDFDTESCDCNPHQLFITKENN*
Ga0102897_10745162	3300007617	Estuarine	MGVMKELHLEITTCELCYGTGWLHFGNSEDYDTESCDCNPHQLFITKENY*
Ga0102871_10547151	3300007620	Estuarine	MGKVKEMLAEITTCDLCYGSGWLFFGNGIDYDTESCDCNP
Ga0102902_12446752	3300007644	Estuarine	MGVMKELHLEITTCELCYGTGWLHFGNSEDYDTESCDCNPHQLFITKEND*
Ga0114340_10366734	3300008107	Freshwater, Plankton	MGVMKTLYTKIENCEKCYGQGWQFWAQGEDFDTESCDCNPHQLFITKENN*
Ga0114341_100218562	3300008108	Freshwater, Plankton	MGVMKELHLEITTCDLCYGTGWLYFGNSEDFDTESCDCNPHQLFITKENN*
Ga0114341_100364574	3300008108	Freshwater, Plankton	MGVMKTLYTEIENCQMCFGQGWHYWAQGEDFDTESCDCNPHQLFITKEDN*
Ga0114341_105149472	3300008108	Freshwater, Plankton	MKELHLEITTCDLCYGTGWLYFGNETDFDTESCDCNPHQLFITKENN*
Ga0114346_10189386	3300008113	Freshwater, Plankton	MAKMKTLYTEITTCDLCYGTGWLFFGNGEDFDTESCDCNPHQLFITKEND*
Ga0114346_10862126	3300008113	Freshwater, Plankton	MGVMKTLYTEIENCENCYGQGWQFWAQGEDFDTESCDCNPHQLFITKENN*
Ga0114336_1001877102	3300008261	Freshwater, Plankton	MGVMKELHLEITTCDLCYGTGWLHFGTSEDYDTESCDCNPHQLFITKEND*
Ga0102831_10149256	3300008996	Estuarine	MGVMKELHLEITTCDLCYGTGWLHFGNEIDFDTESCDCNPHQLFITKENN*
Ga0114978_1000867813	3300009159	Freshwater Lake	MGVMKELHLDITTCDLCYGVGWLYFGNGIDFDTESCDCNPHQLFITKENN*
Ga0114981_101902855	3300009160	Freshwater Lake	MGVMKELHLEITTCDLCYGTGWLHFGTSEDYDTESCDCNPHQLFITKE
Ga0114982_100852410	3300009419	Deep Subsurface	RNWLISGRGYLMGVMKELHLEITTCDLCYGTGWLYFGNSEDFDTESCDCNPHQLFITKENN*
Ga0114982_10751102	3300009419	Deep Subsurface	MGVMKELHLEITTCDLCYGTGWLHFGNETDFDTESCDCNPHQLFITKENN*
Ga0102883_10725774	3300010312	Estuarine	MGKVKDMLAEITTCDLCYGSGWLFFGNGIDYDTESCDCNPHQLFTT
Ga0136551_10017598	3300010388	Pond Fresh Water	MSKMKTLYADIVTCDLCYGSGWLFFGNGIDYDTESCDCNPHQLFITKENN*
Ga0137575_100356491	3300010970	Pond Fresh Water	MSKMKTLYADIVTCDLCYGSGWLFFGNGIDYDTESCDCNPHQLFIT
Ga0153801_100113111	3300012017	Freshwater	MRVMKTLYTEIENCEKCYGQGWQFWAQGEDFDTESCDCNPHQLFITNENN*
Ga0157498_10008113	3300012666	Freshwater, Surface Ice	MRVMKTLYTEIENCEKCYGQGWQFWAQGEDFDTESCDCNPHQLFITKENN*
Ga0207193_102596711	3300020048	Freshwater Lake Sediment	MAKMKTLYTEIENCEQCYGQGWQFWAQGEDFDTESCDCNPHQLFITKENN
Ga0211732_12464154	3300020141	Freshwater	MGVMKELHLDITTCDLCYGTGWLHFGNEIDFDTESCDCNPHQLFITKENN
Ga0211736_104181607	3300020151	Freshwater	MGVMKELHLEITTCELCYGTGWLHFGNSLDYDTESCDCNPHQLFITKEND
Ga0211733_112503853	3300020160	Freshwater	MGVMKELHLDIITCDLCYGVGWLYFGNGTDFDTESCDCNPHQLFITKENN
Ga0211729_103996975	3300020172	Freshwater	MGVMKELHLEITTCDLCYGTGWLHFGNSEDYDTESCDCNPHQLFITKENN
Ga0208326_10001029	3300020494	Freshwater	MGTMKTLYTEIENCEQCYGQGWQFWAQGEDFDTESCDCNPHQLFITKENN
Ga0208697_100124111	3300020507	Freshwater	MGTMKTLYTEIENCEKCYGQGWQFWAQGEDFDTESCDCNPHQLFITKENN
Ga0208858_10437513	3300020524	Freshwater	AKMKTLYTEIENCEQCYGQGWQFWAQGEDFDTESCDCNPHQLFITKENN
Ga0208232_10040826	3300020527	Freshwater	MAKMKTLYTEITTCDLCYGTGWLYFGNGEDFDTESCDCNPHQLFITKEND
Ga0208224_10057194	3300020528	Freshwater	MGVMKELHLEITTCELCYGTGWLHFGNSLDYDTESCDCNPHQLFITKENN
Ga0207942_10062986	3300020549	Freshwater	MSKMKTLYTEIENCEQCYGQGWQFWAQGEDFDTESCDCNPHQLFITKENN
Ga0208855_10022052	3300020553	Freshwater	MAKMKTLYTEITTCDLCYGTGWLYFGNGEDFDTESCDCNPHQLFITKENN
Ga0213921_10047482	3300021952	Freshwater	MGKMKELYSEIITCDLCFGTGWLFFGNGIDYDTESCDCNPHQLFITKEND
Ga0222713_100597797	3300021962	Estuarine Water	MAKMKTLMTEIENCEQCYGQGWHFWAQGEDFDTESCDCNPHQLFITKENN
Ga0214917_103933641	3300022752	Freshwater	MKELHLEITTCELCYGTGWLHFGNSEDYDTESCDCNPHQLFITKEND
Ga0214921_1000471633	3300023174	Freshwater	MAKMKTLYTEIANCEQCYGQGWHFWAQGEDFDTESCDCNPHQLFITKENN
Ga0244777_1000102023	3300024343	Estuarine	MGKVKEMLAEITTCDLCYGSGWLFFGNGIDYDTESCDCNPHQLFTTKEAD
Ga0244777_109015862	3300024343	Estuarine	MGVMKELHLEITTCDLCYGTGWLHFGTSEDYDTESCDCNPHQLFITKENN
Ga0244775_100703862	3300024346	Estuarine	MGVMKEFHLEITTCDLCYGTGWLHFGNSEDYDTESCDCNPHQLFITKENN
Ga0244775_100907392	3300024346	Estuarine	MGVMKTLYTEIENCEKCFGQGWQFWAQGEDFDTESCDCNPHQLFITKENN
Ga0244775_102336932	3300024346	Estuarine	MGVMKELHLEITTCELCYGTGWLHFGNSEDYDTESCDCNPHQLFITKEND
Ga0244776_1000088949	3300024348	Estuarine	MGVMKTLYTEIENCEKCYGQGWQFWAQGEDFDTESCDCNPHQLFITKENN
Ga0244776_106973264	3300024348	Estuarine	ENCEKCFGQGWQFWAQGEDFDTESCECNPHQLFITKENN
Ga0256304_10872911	3300024856	Freshwater	FISGRRYLMGVMKTLYTEIENCEKCFGQGWQFWAQGEDFDTESCDCNPHQLFITKENN
Ga0208026_10071376	3300027236	Estuarine	MGVMKTLYTEIENCEKCYGQGWQFWAQGEDFDTESCDCNPHQLF
Ga0208173_10127304	3300027244	Estuarine	MGKVKEMLAEITTCDLCYGSGWLFFGNGIDYDTESCDCNPHQLFTTKESD
Ga0208810_10406685	3300027304	Estuarine	NCEKCYGQGWQFWAQGEDFDTESCDCNPHQLFITKENN
Ga0209552_100030719	3300027563	Freshwater Lake	MGVMKELHLEITTCDLCYGTGWLHFGNSEDYDTESCDCNPHQLFITKEND
Ga0209651_100018725	3300027581	Freshwater Lake	MKELHLEITTCDLCYGTGWLHFGNSEDYDTESCDCNPHQLFITKEND
Ga0208133_10934701	3300027631	Estuarine	MGVMKELHLEITTCELCYGTGWLHFGTSEDYDTESCDCNPHQLFITKENN
Ga0209135_10393152	3300027642	Freshwater Lake	MPYSSSKGRKLMGVMKELHLEITTCDLCYGTGWLHFGTSEDYDTESCDCNPHQLFITKEN
Ga0209551_100011837	3300027689	Freshwater Lake	MGVMKELHLEITTCDLCYGTGWLHFGNSLDYDTENCDCNPHQLFITKENY
Ga0209599_1000020036	3300027710	Deep Subsurface	MGVMKELHLEITTCDLCYGTGWLYFGNSEDFDTESCDCNPHQLFITKENN
Ga0209617_100787262	3300027720	Freshwater And Sediment	MGVMKELHLEITTCDLCYGTGWLHFGNSLDYDTENCDCNPHQLFITKEND
Ga0209444_101470324	3300027756	Freshwater Lake	MGVMKTLYTEIENCEKCYGQGWQFWAQGEDFDTESCDCNPHQLFITKENY
Ga0209500_1000805411	3300027782	Freshwater Lake	MGVMKELHLDITTCDLCYGVGWLYFGNGIDFDTESCDCNPHQLFITKENN
Ga0209358_101274741	3300027804	Freshwater Lake	EIENCEQCYGQGWQFWAQGEDFDTESCDCNPHQLFITKENN
Ga0209358_105673162	3300027804	Freshwater Lake	MGVMKTLYTEIENCEKCYGQGWQFWAQGEDFDTESCDCNPHQLFITKEN
Ga0247723_100200123	3300028025	Deep Subsurface Sediment	MGVMKELHLEITTCDLCYGTGWLHFGNEIDFDTESCDCNPHQLFITKENN
Ga0247723_100229112	3300028025	Deep Subsurface Sediment	MGVMKELHLDITTCDLCYGTGWLYFGNEIDFDTESCDCNPHQLFITKENN
Ga0315909_1000133046	3300031857	Freshwater	MGVMKTLYTEIENCQMCFGQGWHYWAQGEDFDTESCDCNPHQLFITKEDN
Ga0315903_109943951	3300032116	Freshwater	MGVMKTLYTEIENCENCYGQGWQFWAQGEDFDTESCDCNPHQLFITKENN
Ga0334980_0000095_39205_39357	3300033816	Freshwater	MAMMKTLYTEITTCDLCYGTGWLYFGNETDFDTESCDCNPHQLFITKENN
Ga0334994_0031988_2403_2555	3300033993	Freshwater	MGKMKELHLDITTCDLCYGTGWLYFGNETDFDTESCDCNPHQLFITKENN
Ga0335019_0008917_5266_5418	3300034066	Freshwater	MGKMKELQLDITTCDLCYGTGWLYFGNGIDFDTESCDCNPHQLFITKENN
Ga0335012_0050412_945_1097	3300034093	Freshwater	MAIMKTLYTEIENCETCYGQGWHYWIQGEDFDTESCDCNPHQLFINEENN
Ga0335035_0626126_428_565	3300034105	Freshwater	TLYTEIENCETCYGQGWHYWIQGEDFDTESCDCNPHQLFINEENN
Ga0335016_0640419_2_157	3300034166	Freshwater	LMAKMKTLYTEITTCDLCYGTGWLYFGNGEDFDTESCDCNPHQLFITKENN
Ga0335065_0038124_3265_3372	3300034200	Freshwater	QCYGQGWQFWAQGEDFDTESCDCNPHQLFITKENN