Scaffold Ga0307510

Basic Information
Taxon OID	3300033180 Open in IMG/M
Scaffold ID	Ga0307510_10000007 Open in IMG/M
Source Dataset Name	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	558582
Total Scaffold Genes	457 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	319 (69.80%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

558582

Total Scaffold Genes

457 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

319 (69.80%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Proteobacteria

(Source: IMG/M)

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Ecosystem

Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location Name	USA: Oregon
Coordinates	Lat. (^o)	45.654	Long. (^o)	-122.839	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Oregon

Coordinates

Lat. (^o)

45.654

Long. (^o)

-122.839

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F030880	Metagenome / Metatranscriptome	184	Y
F047142	Metagenome	150	Y
F065129	Metagenome	128	Y
F074484	Metagenome / Metatranscriptome	119	Y
F090863	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307510_10000007312	F047142	GGA	LFRRPFRRTPALLALGVSVALQMCFPVAHATANVKPTAQRTTALGGFVKDRALARLLGETLFRDTLEVMSDPANQPAATAPASEAPAATQDNSAVARIARTVLAHQRLDKYIWLIQQAYDDSMWKGGDRTRIEQHFPLIWRTSIMLYEASLSASPHRVRVCTPADNGDGFDCRDEISRPRIVPIPADAPLILLNQPTIG
Ga0307510_10000007323	F090863	GAG	MDDTTLKLGLLMEAAQTHQKSAEATLRKLKSTTTDLATLVRDEVRSVLIEEFQSLAADSKRAATALREVQRAANIRALVWSLGITTLCSAIPIGLAGWLIPSHREIAALRAKHDELATKIASLEDRGGRIDLRRCGNGARLCVRVDRKAPTYGEQSDYLVIRGY
Ga0307510_10000007336	F065129	GGAGG	MPKTQTPGTFEECADELNDFMNTLERYPHTVLAFVLRAHLSGLLQALLMSGLWTRDEVATFMEDMEHEVLAVE
Ga0307510_1000000736	F030880	N/A	MSEAYQYDDGCRLLIFRHADAECQALTAHYSGIRFNQVRLTFLPQSALQDTPDREEIEMTFNISGMPFDLTRHGFAHASWWRMVPPSGITHRCSTDGFGRAWRAIRTRTGYRLQGAQYADGMTKLTVALKPIFHSRRFVPGVTPMPSRW
Ga0307510_10000007420	F074484	AGGAG	MSTPEQRLQRAARACLASGRLPRVQSQCIWGGYGRGEVCSLCGEPIRSNEVEFEVPETDSGTRPAFKFHITCHDVWQLECGLDELDAH

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0307510_10000007

Overview

Ecosystem & Geography

Associated Families

Sequences