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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300028025 Open in IMG/M |
| Scaffold ID | Ga0247723_1000074 Open in IMG/M |
| Source Dataset Name | Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 58778 |
| Total Scaffold Genes | 117 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 90 (76.92%) |
| Novel Protein Genes | 20 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 16 (80.00%) |
| Associated Families | 20 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: West Virginia | |||||||
| Coordinates | Lat. (o) | 39.6017 | Long. (o) | -79.9761 | Alt. (m) | Depth (m) | 2281 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000263 | Metagenome / Metatranscriptome | 1424 | Y |
| F000369 | Metagenome / Metatranscriptome | 1222 | Y |
| F000376 | Metagenome / Metatranscriptome | 1216 | Y |
| F000447 | Metagenome / Metatranscriptome | 1128 | Y |
| F000450 | Metagenome / Metatranscriptome | 1126 | Y |
| F000868 | Metagenome / Metatranscriptome | 853 | Y |
| F001019 | Metagenome / Metatranscriptome | 804 | Y |
| F003663 | Metagenome / Metatranscriptome | 474 | Y |
| F003690 | Metagenome / Metatranscriptome | 473 | Y |
| F005741 | Metagenome / Metatranscriptome | 391 | Y |
| F006744 | Metagenome / Metatranscriptome | 365 | Y |
| F006846 | Metagenome / Metatranscriptome | 363 | Y |
| F007644 | Metagenome / Metatranscriptome | 347 | Y |
| F009685 | Metagenome / Metatranscriptome | 314 | Y |
| F016396 | Metagenome / Metatranscriptome | 247 | Y |
| F017995 | Metagenome / Metatranscriptome | 237 | Y |
| F021288 | Metagenome / Metatranscriptome | 219 | Y |
| F026561 | Metagenome / Metatranscriptome | 197 | Y |
| F037227 | Metagenome / Metatranscriptome | 168 | Y |
| F078384 | Metagenome | 116 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0247723_100007413 | F003663 | AGGTGG | MLSTATALLDATKDSMFDEDIMGLAGELHTRRNELSDEIFAKYLFMYSSALSAKVADSITKVLLTEQEMSDLCATIDEMENLSETILEENE |
| Ga0247723_100007417 | F005741 | AGGA | MRNRFRIEIYDANKANDLTMYSEQGVDKEYLTELVFSNLRRFNGKVRAYVYDSVKKKKITAMFLNEETVASLNK |
| Ga0247723_100007424 | F000450 | GGCGG | MGDRANFGFVQPNGNTIVLYGHWAGYNMLGKLADAVIAARPRWTDTSYATRIAISQLIGDQWNMETGWGLQVNERSDNEHKIAIVDFEQQTFSLHEEDDFRNQDNKVRGMKNEAIFTMDLSAFCEKYALENILVN |
| Ga0247723_100007426 | F000868 | GAGG | MSDPHGTIGIYRKGGSMSFLENENQMVIDAELQEIAEQLLDDWMNSNLDEGQLYADWRIADMSSSNYLKGRFNQHYDLTPDNQYYLEFDEEK |
| Ga0247723_100007427 | F021288 | AGGAG | MLGYTQKDLADMTYGVYQADLLVNADENPAIHNYLVMAHDFLQGLWAEGYFDHV |
| Ga0247723_100007428 | F007644 | N/A | MISYRACGQKGISIMSKSSYFLEYMKVHLISLIQDLDKDLNVESKINIQGQIMATEHLLSVATDIMNSSNERVYE |
| Ga0247723_100007429 | F000263 | AGG | MRHTELPVHLQRMVDAEVTGLDIMHGELKNLMLLGEKELERTLIAEQESGEAMDSMERTYAEGYLDALVSLYKLTYDLSFAIGGKNE |
| Ga0247723_10000743 | F003690 | GGA | MISDGLELLLSEYGLELDSFLGAIYLPWHTIAITALLITAYKIYKRKKITK |
| Ga0247723_100007430 | F001019 | N/A | MIYHLPLGEKMSSYEPSLEILEVNYGCSPGGVDTFEVYDRSEIEPVQIPIYETESLTEAVLFCYNLGKDFIVRTLAEWEERELMNA |
| Ga0247723_100007433 | F009685 | AGGAGG | MKIKMSDQYVDSVLAEAQRLLWGGSETENIAAHNLIAKLIKDRLPDEEVE |
| Ga0247723_100007439 | F006846 | GAG | MLFNFVEKYLMRPKRLREAIQAVVRENDELLRRLSEYKEQGPTNLTWSEGDKWYGWTYNPDKKRYYFDDIGNESLMGLWEDQWLKEADDHGIM |
| Ga0247723_100007441 | F078384 | AGG | MTYDFFAQEWFGGCGACGTELFAPTKGSYLVQRSLHTHSNSCLGGW |
| Ga0247723_100007447 | F026561 | N/A | MSDNGTGMASPVNPTPAGAVTSEEATRKNPKQGFRSGLKVDKNRHGIRRETSLGPKPPKKTRPKKV |
| Ga0247723_10000745 | F000447 | GAG | MGYIEIFRVNEEGAGWVDLSEATPEEILDLEIGLFQEGAI |
| Ga0247723_100007454 | F037227 | GAG | MTVLEGIVEEVAAELYQKLWNAIPAEEQTEESSKAIGLNSKETTLFVIQKFMDKFNAAAEELKDQPDEQ |
| Ga0247723_100007456 | F016396 | N/A | MWKHCNCTNPLRQRRNGTLRKSERLRLLEMQVVRLEMLVDLYSVTLNNLLESQGMEKPSLDAGKWYQKKLDGLK |
| Ga0247723_10000746 | F006744 | AGG | MNLEEFKKSVIAQREASKAQALSVLSATITTQTNEGENLNG |
| Ga0247723_10000747 | F017995 | GGA | MAKVKEYIEIIAANCDECGGAGFLFWGNEKNFDVEPCACVDEIADELTVDWVND |
| Ga0247723_100007480 | F000376 | GGA | MSAYQEMAKQCKCCGKHVPLPTTLKEYNEVMLCPTTFSNVVEYKRIWKTLGKRPAGSIRKHFSDYVQQLVEETIDKNEDGTIQ |
| Ga0247723_100007482 | F000369 | GAG | MSEIELVDHIDRMNKVVSELLKGNSPTQISTLTGLKRAEVIELIDEWKSVVHNDSTAKERAKEAISGADKHYAMLIKEAWKTVEDADQQGQLNVKSTALKLIADIEGKRIGMLQEIGLLDNAELATQISETERKQEILVKILKEVTASCPKCKMDVAKRLSQISGVVEPIEIIEEVSGI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |