Scaffold Ga0209400

Basic Information
Taxon OID	3300027963 Open in IMG/M
Scaffold ID	Ga0209400_1005322 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027963 Open in IMG/M

Scaffold ID

Ga0209400_1005322 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8870
Total Scaffold Genes	26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (76.92%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

8870

Total Scaffold Genes

26 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

20 (76.92%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	3
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000980	Metagenome / Metatranscriptome	814	Y
F001125	Metagenome / Metatranscriptome	769	Y
F002245	Metagenome / Metatranscriptome	578	Y
F006744	Metagenome / Metatranscriptome	365	Y
F080027	Metagenome / Metatranscriptome	115	N
F097310	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209400_100532216	F002245	AGG	MKNEIRVPHTIVFEAIIDLDKIPANLLPALIALDQNSIEQMCKEATLHALGMSNVLPLANENNTWAEVTIKGDN
Ga0209400_100532223	F097310	GGA	MSKMKQLLDEILNCDLCNGKGWVFFGNAKEYDVESCECNPNELDVNY
Ga0209400_100532224	F006744	AGG	MNLDEFKKHVLETREASKAEALSVLSATITIQPNERENLK
Ga0209400_100532226	F080027	N/A	NSRHFEGEIISATPRPEIWYGEKTEAYLIEINTRSLRNKFATIAVKVGE
Ga0209400_10053224	F001125	AGGCGG	MGDRANFGFKQSNDNTIFLYGHWAGHGMLERLANAVEAARPRWTDEAYATRICVSQMIGEDWKSETGWGLSVNRILDNEHKVPVIDWAEQTFTLMEEDLQTVVFSLSLDKFCTKYSQLVM
Ga0209400_10053228	F000980	N/A	MTHYQKYTWVCTGDCDALIEYTIKDGFGWPNGVMQLTCPCNSKCTLVSVEDATIPYTDSPLPTKEEPMETETPAVTVPDTYNANLLVTYKVIRGYSDAEYATDKVASIEWSLHNGRESQKRVNLLLSQIDAVKEIICEAYADSGDQDTLREIAEALSIELIKEVEFTASIEVSGTYSYNILENDYDLDLESEVTDALYADSNNGNIEIGDTEVCNVREC

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209400_1005322

Overview

Ecosystem & Geography

Associated Families

Sequences