Scaffold Ga0208147

Basic Information
Taxon OID	3300025635 Open in IMG/M
Scaffold ID	Ga0208147_1000705 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_<0.8_DNA (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0208147_1000705 Open in IMG/M

Source Dataset Name

Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_<0.8_DNA (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11345
Total Scaffold Genes	36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	31 (86.11%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (77.78%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

11345

Total Scaffold Genes

36 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

31 (86.11%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (77.78%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.283	Long. (^o)	-75.3633	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Delaware Bay

Coordinates

Lat. (^o)

39.283

Long. (^o)

-75.3633

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000980	Metagenome / Metatranscriptome	814	Y
F002245	Metagenome / Metatranscriptome	578	Y
F005741	Metagenome / Metatranscriptome	391	Y
F006744	Metagenome / Metatranscriptome	365	Y
F019325	Metagenome / Metatranscriptome	230	Y
F033433	Metagenome / Metatranscriptome	177	Y
F045755	Metagenome / Metatranscriptome	152	N
F076101	Metagenome / Metatranscriptome	118	Y
F101047	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208147_10007051	F019325	AGGAG	MTQLNETLFSTIVHEYHNGGVKSSYGLDAYTRKELLKFLFSSKNCNCINCLDKESN
Ga0208147_100070515	F002245	AGG	MSNLMKVPHTVVFEAIIDLDKIPANLLPRLIALDEKSITEMCKGATVHALGMSNTLTVANENNTWAELTVKENN
Ga0208147_100070519	F005741	AGG	MKNRFRIEIYDANKANDLTLYSEQGVDREYLNELVFSNLRRFNGRVNAYVFDNLKKKKVTAMFLDESIASKLQTN
Ga0208147_100070524	F000980	N/A	MAVQDVSGPCYNIAMTTTNGTKYTFVCDPDECDSLVELTTVDGFGFPNGVIRNTCPCGREMSYISATILSSEQPTTKEEKMESPSTEITTPTVPDTYNSNLLVTYKVIRGYSDAEYTTDKVASIEWDLHNGRQSQKRVTTLLSQIDAVKEIICEAYADSSDQDTLREIAEALSIELIKEVEFTASIEVTGTYSYNILENDYDLDLESEVTDALYADSNNGNIEIGDTEVCNVREC
Ga0208147_100070535	F033433	N/A	MLEILEVNYSVSPGGIDEFEVYSVDERDHFDPPIYTSTKLEEAVRFCYELGRDFTVRTLAQWEERELAYEA
Ga0208147_10007056	F006744	AGG	MNLDEFKQHVLATREASKAEALSVLSATITKSTNERENLNG
Ga0208147_10007057	F101047	GGA	MGRMKELYTQILECETCNGQGWQFFGNETDYDVEACDCNPLGFFQENK
Ga0208147_10007058	F045755	AGGAG	MSKIAGMWICDNCDTLAVVSVETDTIQITQCKCVTNERETNV
Ga0208147_10007059	F076101	GGA	MYKITLSYDGNAPHWQKDYENEFDAWKDFFDFVDWGFADKFSTVNLYNSEMKCFTRHFYREERKVVTVK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208147_1000705

Overview

Ecosystem & Geography

Associated Families

Sequences