Scaffold Ga0209674_100007

Overview

Basic Information

• Taxon OID: 3300025226
• Scaffold ID: Ga0209674_100007
• Source Dataset Name: Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1077082
• Total Scaffold Genes: 1040
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 690 (66.35%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Endophytes → Unclassified → Arabidopsis Root → Arabidopsis, Maize, Boechera And Miscanthus Rhizosphere Microbial Communities From Different Us Locations

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 35.6667
  • Long. (^o): -78.5097

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040130	Metagenome / Metatranscriptome	162	Y
F062899	Metagenome / Metatranscriptome	130	Y
F090602	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209674_1000071026	F090602	GAG	MQQHLMSAPAARVEWELLPSLLNRVSGRRLRSQPAWSETLPSELDLLEPSDPFEEVLPGLQMREVREPDIFQIFFG
Ga0209674_100007784	F062899	GGAG	MNPLAANRTAARPQRPLPGVSRHCSFVEDLNWPAPRTPDRKPARPTEVWVPGPNGQWDGVTPTLQ
Ga0209674_100007831	F040130	GAGG	MPGPVKRAVAIMAGVVLGMVIAAGASPWRELFRKTEPVPPAPIQRERAPDTRV