Scaffold Ga0244777_10690188

Overview

Basic Information

• Taxon OID: 3300024343
• Scaffold ID: Ga0244777_10690188
• Source Dataset Name: Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 612
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F006744	Metagenome / Metatranscriptome	365	Y
F080027	Metagenome / Metatranscriptome	115	N
F101047	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244777_106901881	F080027	N/A	NSRHFEGEIINATPRPEIWYGEKTEAYLIEINTRSLRNKFATVAVKVGE
Ga0244777_106901882	F000447	AGG	MGYIEIFRIDEQGAGWVDLAEATPDELFNIEIGLLNEGAFE
Ga0244777_106901883	F006744	AGGAG	MNLDEFKKHVLATREASKAEALSVLSATITKSTNERENLNG
Ga0244777_106901884	F101047	GGA	MGKMKELYTQILECDTCYGTGWLYYGDENNYDVEACQCNPLSFFQENK