Scaffold Ga0244777_10000910

Overview

Basic Information

• Taxon OID: 3300024343
• Scaffold ID: Ga0244777_10000910
• Source Dataset Name: Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22200
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (84.78%)
• Novel Protein Genes: 17
• Novel Protein Genes with Ribosome Binding Sites (RBS): 16 (94.12%)
• Associated Families: 17

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F000447	Metagenome / Metatranscriptome	1128	Y
F001043	Metagenome / Metatranscriptome	794	Y
F001125	Metagenome / Metatranscriptome	769	Y
F002245	Metagenome / Metatranscriptome	578	Y
F003379	Metagenome / Metatranscriptome	490	Y
F003422	Metagenome / Metatranscriptome	487	Y
F004051	Metagenome / Metatranscriptome	455	Y
F005741	Metagenome / Metatranscriptome	391	Y
F006744	Metagenome / Metatranscriptome	365	Y
F006984	Metagenome / Metatranscriptome	360	Y
F009143	Metagenome / Metatranscriptome	322	Y
F010085	Metagenome / Metatranscriptome	308	Y
F017995	Metagenome / Metatranscriptome	237	Y
F021481	Metagenome / Metatranscriptome	218	Y
F051704	Metagenome / Metatranscriptome	143	Y
F080026	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244777_100009101	F006984	AGGA	MPNWCYNTLTIQGPKSEVDMIKDRLNKPFTLAQETFGMGDISSSGFPTKIQQVSYSNPVF
Ga0244777_1000091010	F005741	GAG	MKNRYRVEIYDANKMNDVTIYSDSGVDKEYLTELVFSNLRKFSGKVNAYVFDNVKKKKTTAMFLDEAVVNKYKVI
Ga0244777_1000091011	F021481	AGG	MSPILDTAKGRFYRKGDVFTTGKSGITGTITEIISIRPTLTKLGLNTENGLRWAMVKIGA
Ga0244777_1000091013	F004051	AGGA	MTLGNKTYQVGDLFTTLKSKETGVIKEIIPNASGSVRVRLETDNGERWTTVLADSLA
Ga0244777_1000091015	F002245	AGG	MSNLMKVPHTITFEAIIDLDKIPASMLPTLIALPENAIQEMCKGATLNALSLSNTLEVANTGNYWAELTVKDTE
Ga0244777_1000091018	F017995	GGA	MARMKEYVEIISAACDECGGAGFLFWGDENNYDVEPCECVVETEDELTLDWVNE
Ga0244777_1000091019	F006744	AGGAG	MNLDEFKKHVIAQREASKAEALSVLSATITKTNEGENLNG
Ga0244777_1000091020	F000447	AGGAG	MGYIEIFRMNEEGAGWVDLSEATPDELFQIEIGLLNEGAFE
Ga0244777_1000091024	F009143	GAGG	MMTKWDTIQADVSDAYVYLDEEEMYEKALAEGAIDFDSDDYDDDELHKALTLDWND
Ga0244777_1000091029	F051704	AGGA	MHDHENIVLATGSGITEMQLMWIIMGAMAIHHIWMWWKMKKKNCNCK
Ga0244777_100009103	F001125	GGCGG	MGDRANFGFKQSDGNTIFLYGHWAGHEMLANLASAVSAAEPRWQDESYATRIAISNLIGEDWKSETGWGLSVDRILDNEHKIPVINWTAKTFTLFEEDLTTEVFSLSLADFVQKYSRLVM
Ga0244777_1000091030	F003379	GGA	MKKLSALIILIATAILSGALLNRFLNWAGNIEIFDFDLNEDIDNEQF
Ga0244777_1000091031	F080026	AGGA	MAYSQDQMEFAHKVVFRLMEILKVCPNVDDKYKCHTTHQAPHRRCVDLMVLLAEITNLPEYLEYLGNNPETNKDPYGWIIEYPPAEDIIAKTVDLE
Ga0244777_1000091035	F010085	AGTAGG	MQIQYVSKYIALSEEGLVPRLECPMDQGSLLCNIDLEDNIYLYCLSCNYKNNIGLEVYKKIVESVTNEI
Ga0244777_100009105	F001043	GGAG	MSDYKDGFTDGYKFAREEMMEKLSEIDIMDIDSWILDRISEMIEGGQL
Ga0244777_100009106	F000311	N/A	MYFELTAPNQVAFARATWDAELLGLDPMTIAPLTFNIGTGSIEKVSRIRDKYNLTESYISDYEPTGYTGR
Ga0244777_100009107	F003422	GGA	VNVSGPWYNSSMTNELVSSKYTFVCDPDECDCLIELTSSDGFGFPSGVTELTCPCGRKTTLVSVEHATIAPSNQTKEEQMESTVTTSPIPDTYNPNLLVTYKVIRGYSDAEYATDKVASLEWDLHNGRQSQKNVTTLQSKINTVKDIITEAYADSDDQDTLRAIAEALGIELVREVLFTATLEVSGTYTYNILDSDYELDLDSEVTDALYADSNNGNITIDDTEVCHVREA