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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300024343 Open in IMG/M |
| Scaffold ID | Ga0244777_10000080 Open in IMG/M |
| Source Dataset Name | Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 71570 |
| Total Scaffold Genes | 105 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 84 (80.00%) |
| Novel Protein Genes | 20 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 16 (80.00%) |
| Associated Families | 20 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Columbia River Estuary, USA | |||||||
| Coordinates | Lat. (o) | 46.234 | Long. (o) | -123.9135 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000258 | Metagenome / Metatranscriptome | 1443 | Y |
| F000369 | Metagenome / Metatranscriptome | 1222 | Y |
| F000376 | Metagenome / Metatranscriptome | 1216 | Y |
| F000473 | Metagenome / Metatranscriptome | 1097 | Y |
| F000671 | Metagenome / Metatranscriptome | 945 | Y |
| F000852 | Metagenome / Metatranscriptome | 860 | Y |
| F001280 | Metagenome / Metatranscriptome | 732 | Y |
| F007921 | Metagenome / Metatranscriptome | 342 | Y |
| F008245 | Metagenome / Metatranscriptome | 336 | N |
| F012975 | Metagenome / Metatranscriptome | 275 | Y |
| F014017 | Metagenome / Metatranscriptome | 266 | Y |
| F014140 | Metagenome / Metatranscriptome | 265 | Y |
| F016396 | Metagenome / Metatranscriptome | 247 | Y |
| F020166 | Metagenome / Metatranscriptome | 225 | Y |
| F021988 | Metagenome / Metatranscriptome | 216 | Y |
| F023341 | Metagenome / Metatranscriptome | 210 | Y |
| F060898 | Metagenome / Metatranscriptome | 132 | N |
| F073544 | Metagenome / Metatranscriptome | 120 | Y |
| F073565 | Metagenome / Metatranscriptome | 120 | Y |
| F080044 | Metagenome / Metatranscriptome | 115 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0244777_10000080105 | F000852 | AGGA | MTTKREYLKQQGITVGVRGRFSGAAKVALQEAVNKGVTFTDEKTNKAK |
| Ga0244777_1000008019 | F000258 | GGAGG | MTTDYNYDVMLDLRKHLWSQLKSNDLFEASDYYSDNLGEELIPIIPVQQQPEMNQFLSGKKHIVYDKIGMSYEDNWVICCEQILFTIYSTDISEINQIRNLMTDLYRRMDESARDANRYSGISQKFKFYSIFVADISPTAPSEELAGFLSADVILEVKYARHVGTDGRFL |
| Ga0244777_1000008022 | F060898 | AGAAG | MPELIQTLKSFKKQKSEDRKFAAGLKGIELNIDEDEEEVPQGKTFEDIRRKALGINASGDDILSLQGPLASDAGFGIGAGLGYSRE |
| Ga0244777_1000008047 | F080044 | AGAAG | MPNLNEFFDKKIEQKEYSLEKLPGLRACNTCDEDVNGATWDPIELVMSWRCSKGHETIFKVQ |
| Ga0244777_1000008051 | F008245 | AGG | MAEDKNTLELISNITEFNDLHEFMKDEHLDKALAIVVKLLMNPDVPSAKAPMLIMELQAMSTKFAVMSSVYSTIAKDKAGTVNNNKKNVYYSVKESIDKLVDALKYVVRYNS |
| Ga0244777_1000008058 | F000369 | N/A | MSEIELAQHFDRMNKVVEELLKGNTPTQIATITGFQRKEVLEFIDEWKSVVHSDSGIRDRAREAISGADQHYAMLIKEAWKTVEDADTQGALAVKSGALKLIADIETKRIAMLQSVGVLENNEIASQIVETERKQEVLVRILKEVTATCPKCKMEVAKRLSQITGIIESVPVEEADVV |
| Ga0244777_1000008060 | F000376 | AGGA | MSTYQEKAKECKCCGKHVPLPTVLKEYNGIVLCPTTFSNVVEYKRIWIAAGARPMGNIRKHFSEYVQQIVEDTIDKNEDGTL |
| Ga0244777_1000008071 | F023341 | AGGA | MPVYEYKCSYDDAHPTMSTHRSIMDEDPGYTCVECESEMIRHFTPFGIQFKGNGFYKTDNPK |
| Ga0244777_1000008075 | F014140 | N/A | MNTYTVKLNVELEVQAFNETDAKDYVSDIFNVDEEIKGVNIVKIIQK |
| Ga0244777_1000008078 | F012975 | AGGA | MLNLTLKGVEVFMERSKHSKQDSYWENYDLLIWKKDPGGFTNVKGMFRKDSWGITERIPVNENGIWKLPKHYVKYFK |
| Ga0244777_1000008080 | F000473 | AGG | MEFINKDKDHFKHGINLWNGEPNKPVFYTKEMSSKIRELKKPVPDLMLDIVQYPEFLAVRLYEDNFVQYEGIKKEQVIDYVGKVKKLIESYGVRCELEGVPSARILRSN |
| Ga0244777_1000008081 | F073544 | AGG | VREYYEVINIVFIHELRLWGTCDSLGLYASKIKYQKDGIEYEEMLDNEEFTVMEEIVIEHQEEDN |
| Ga0244777_1000008082 | F000671 | GAGG | MEKILCYCCNKTKNKLNLKKSTLIPINLFMCESCISSKFEPRWVIILAGRQLGSDSVKEFIIKKRYCGADIAASELLV |
| Ga0244777_1000008086 | F016396 | GGA | MRKSERLRLLEMQVVRLEMMVELYTQTLSNLLESQGLSAPTQLDAGKWYKAKLDQLDKE |
| Ga0244777_1000008093 | F014017 | N/A | MDDLGLYLDEKLRRQIADEIRHLELPPEWRPSEVIRYIVRIIEKNNGQTPR |
| Ga0244777_1000008095 | F073565 | AGGAG | MSDGQNLTGFNEVKPVTNTSWNGEQYAADPASAFPSTDKSTQDGSGVGNNGK |
| Ga0244777_1000008096 | F001280 | N/A | MCIECGCNIFGVADLAPATIVDASRDGESGLTLDMTSTPEQTRQFINE |
| Ga0244777_1000008097 | F021988 | GGA | MTTPPAAGAASGAVTSRETPKRYPRQGLKIDTNKHGIRRETNLNQQPKKGRPKKV |
| Ga0244777_1000008098 | F020166 | GGAG | VSKEPKIMRMDWRSLGYWPVYKDGKLTWEKDPKND |
| Ga0244777_1000008099 | F007921 | AGGA | MIDWLVNRIFRWDPLRKAIFDEVRLYQSVDRSMWEYEKEGPSNLTWSEGDKWYGWTYNSNAKRYYFDDIGNESLMGLWEDQWAREEAESK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |