Scaffold Ga0214919_10000488

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10000488
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 67721
• Total Scaffold Genes: 100
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 66 (66.00%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (50.00%)
• Associated Families: 10

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000376	Metagenome / Metatranscriptome	1216	Y
F000473	Metagenome / Metatranscriptome	1097	Y
F001464	Metagenome / Metatranscriptome	689	Y
F002501	Metagenome / Metatranscriptome	553	Y
F003689	Metagenome / Metatranscriptome	473	Y
F007921	Metagenome / Metatranscriptome	342	Y
F008814	Metagenome / Metatranscriptome	327	Y
F038675	Metagenome / Metatranscriptome	165	Y
F040629	Metagenome / Metatranscriptome	161	Y
F066789	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_1000048810	F007921	N/A	MIDWLVNRMFRWDPLRKAVFDEVHMYDGIAKRIEKYKDEEPTNLTWSEGDTWYGWTYNSNAKRYYFDDIGNISLMGLWEEQWLHETDKSEV
Ga0214919_10000488100	F003689	N/A	ILFTIYSTDLIDIVEIRNFMTDEFRRMDDSARDINDWAGLSDKFKFHSIIVADISPTKPSEDLEGFYASDLVLEIKYSRITNNNGKFA
Ga0214919_1000048826	F008814	AGG	MDNKLTVLEEIIKEIGEELYQKWYNSIALEDRNEAASKALSTNAGETAMWVIQTFMEKFNSAADELKGE
Ga0214919_1000048833	F000473	N/A	MASSNLYDNVHFKHGINQWTGEPNKPVFYSDEMRRKLREIKKPLLLMMDIVKYPEFLALRLYEDNFIQFTGIEKEKVIDYVSKAKKMIESYGVRCELEGVPIEHRKL
Ga0214919_1000048837	F040629	N/A	VNKYSISIAITAEVEAFDENDAMDYISDIFGIDDEIKSVKIVRIVKK
Ga0214919_100004885	F066789	GGGGG	MSDAMCTKYGCDYKLDLDGQVTCSNCGAMGDDMPNPQSADNSVFERQIDFE
Ga0214919_1000048856	F000376	GGA	MSIYQEKAKDCKCCGKHVPLPIILKEFNRTTLCPTTYYNVLEYSKLWEKIGHRPPGNLSKHFSEYVQQVVQNSIDNGKSV
Ga0214919_1000048862	F038675	N/A	MKFYQSKEWLYRRYVVQKKTVTEIGAECSVSAMTIQRYLEKFGLIRK
Ga0214919_1000048883	F001464	GAG	MDRKKRKSSTKKFLYFFLNNKIHRVLSSSRSKDEMIAWSYLDRKRVLYSHSQVLKNMEKAYSTTQVADLLNKHKVTIEDYILEGKIKMPQRVYPIGKPDSKWYKFMYSESDIMDIHEFILEAGYSKNVPSKAELRALLKHSFILYTKTETGFIPVWKAE
Ga0214919_1000048884	F002501	AGG	MWCSKCKGRVFVDRVFSQKLHVELFCIMCGKRWMVNKETSSFGKWIEKKEKAQLKSSSIS