Scaffold Ga0214921_10016496

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10016496
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8305
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (96.30%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001562	Metagenome / Metatranscriptome	670	Y
F002245	Metagenome / Metatranscriptome	578	Y
F004051	Metagenome / Metatranscriptome	455	Y
F017134	Metagenome / Metatranscriptome	242	Y
F017829	Metagenome / Metatranscriptome	238	Y
F020168	Metagenome / Metatranscriptome	225	Y
F029434	Metagenome / Metatranscriptome	188	Y
F101047	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1001649612	F101047	GAG	MKELYTQIFECDTCLGQGWQFFGNETDYDVEACDCNPLGFFQENK
Ga0214921_1001649617	F017134	GAGG	MELFTVACLNYEICGAQETFDSVEEYEIYGDDYICAECYDSEEMEFYELTGWADSDALASAGHGMDEDY
Ga0214921_1001649620	F020168	GAG	MTDVIGSLIGIILIGFLCSPIILAVYMWNSVKIDFDNDGKDDVPNRWNR
Ga0214921_1001649621	F002245	AGG	MSNLMKVPHTVVFEAILDLDKIPASLLPRLIAMDSETITEMCKGATLHALGMSNVLPLANEHNTWAQVTIAEGN
Ga0214921_1001649623	F004051	GAGG	MTIEGKLYQIGDLFTTLKSKKTGVIKEIHPQASGSVRVLLEMPTRETRWTSVSAKTLLG
Ga0214921_1001649625	F017829	AGG	MKNRYRVEIYDANKLNDVTIYSEQGVDKEYLTELVFSNLNKFSGKINAYVFDNVKKKKTTAMFLDESIVNFNKQMLSKASRIEFGS
Ga0214921_100164967	F029434	AGG	MKKYTFGVWLDIDAEDEDQALSLFDEVVKKNPFVSDSYCFEWKEVADEIAI
Ga0214921_100164968	F001562	GAGG	MKSQFEIDLEIKESFIDLLNDIYPTVKIGYSTFTPAEILECCDPIAFSIGLIEHEDYLAEMENE