Scaffold Ga0214921_10011400

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10011400
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10810
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (79.41%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Associated Families: 13

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F000447	Metagenome / Metatranscriptome	1128	Y
F000450	Metagenome / Metatranscriptome	1126	Y
F002071	Metagenome / Metatranscriptome	596	Y
F002489	Metagenome / Metatranscriptome	554	Y
F003422	Metagenome / Metatranscriptome	487	Y
F003663	Metagenome / Metatranscriptome	474	Y
F005531	Metagenome / Metatranscriptome	397	Y
F006744	Metagenome / Metatranscriptome	365	Y
F007470	Metagenome / Metatranscriptome	350	Y
F038205	Metagenome / Metatranscriptome	166	Y
F085262	Metagenome / Metatranscriptome	111	Y
F105172	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1001140010	F105172	GGAGG	MTLELNDYGLEFDTYVCYIALSWQILIPATIALIAYKIYKRKKNK
Ga0214921_1001140013	F000447	GGAG	MGYIEIFRINEEGAGWVDLSEATPDEMFQIEIGLLNEGAFE
Ga0214921_1001140014	F006744	AGGAG	MNLEEFKKHVIAQREASKAEALSVLSATITPTTERKEN
Ga0214921_1001140015	F038205	AGGA	MGNLAEIIAVACDECGGAGFLFWGDENNYDVEACECAVEDWNI
Ga0214921_1001140020	F003663	AGGTGG	MLSTAIELLQATKDSVFDDEIMGLAGELHTRRNELSDEIFAKYLFMYSSAVASKVADSVTRVLLTEQEMSDLCDTIEEMDNLSETILEENE
Ga0214921_1001140022	F085262	AGGAGG	MDNLYSILSTWYPEGDYTEAELWDAIAESEGLDVSEIMDGDLTEYL
Ga0214921_1001140023	F002071	AGGA	MEIGQTYTTTQSGITGIIKAVDNHPSGVNRILLDVNGEERWTSATAN
Ga0214921_1001140028	F003422	N/A	MTNELISSKYTFVCDPNECDCLIELTSSDGFGFPSGVTELTCPCGRKTTLLSVEHATIQPTQTKEEQMETDTTVSPAVNYNPDLLVTYKVLHGYSDPEYATDKVRNIEWDLHNARQNSKTVSTLQSNINTVKDIITEAYTDSDDQETLRAIAEALGIELIKEVQFTASVEVTGTYSYNILDSDYEPDLTDEVTDALYADSNNGNITIDDTEVCNVREAY
Ga0214921_1001140029	F000311	GAGG	MYFELTAPDRLSMEMAYWDAQITGLDPQAMTPLTFNIGTGSIEKVSRLRDKFNLIESYTSDYEPTGYTGR
Ga0214921_100114003	F002489	AGGA	MTEENMEPAPLDQNLPMVNYIMMHRIYDLLTLIANKLVGPEDVSKMVSYHDQGFLLGPQPSYTPSPEVEEEFVQDLIDFEQ
Ga0214921_1001140030	F007470	GGAG	MDYQDGFEDGVKFAREVIIANIKLWAEDNEDGQVYDEIADRIEFGTVDYDL
Ga0214921_1001140032	F000450	AGGCGG	MGDRANFGFVQPNGNTIVLYGHWAGHNMLGRLADAVIAARPRWTDSSYATRIAISQLVADQWNMETGWGLHVNEIGDNEHKIAIIDWDQQIFSLHEQADYRDETNKVRGMKNEAIFTMDLSSFCEKYALENILVN
Ga0214921_100114008	F005531	AGAAG	MTITYSLWQGSQLLSVNNKASKPEEILAVMEELNKLGKGFSFIVREVEVNK