NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F085262

Metagenome / Metatranscriptome Family F085262

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F085262
Family Type Metagenome / Metatranscriptome
Number of Sequences 111
Average Sequence Length 47 residues
Representative Sequence MSNLYSILSERHPDGDFNEMDLWEAIADSEGLELNEIMDGDLTEYL
Number of Associated Samples 79
Number of Associated Scaffolds 111

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 82.88 %
% of genes near scaffold ends (potentially truncated) 16.22 %
% of genes from short scaffolds (< 2000 bps) 72.97 %
Associated GOLD sequencing projects 69
AlphaFold2 3D model prediction Yes
3D model pTM-score0.60

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (50.450 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake
(19.820 % of family members)
Environment Ontology (ENVO) Unclassified
(51.351 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(64.865 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 39.19%    β-sheet: 0.00%    Coil/Unstructured: 60.81%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.60
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 111 Family Scaffolds
PF06067DUF932 14.41
PF09360zf-CDGSH 0.90
PF00534Glycos_transf_1 0.90
PF136402OG-FeII_Oxy_3 0.90
PF04820Trp_halogenase 0.90



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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A50.45 %
All OrganismsrootAll Organisms49.55 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300002161|JGI24766J26685_10002192Not Available5798Open in IMG/M
3300002161|JGI24766J26685_10004583All Organisms → Viruses → Predicted Viral3965Open in IMG/M
3300002408|B570J29032_109527352Not Available839Open in IMG/M
3300002408|B570J29032_109751438All Organisms → Viruses → Predicted Viral1207Open in IMG/M
3300002835|B570J40625_100046345Not Available6310Open in IMG/M
3300002835|B570J40625_100213272All Organisms → Viruses → Predicted Viral2070Open in IMG/M
3300003413|JGI25922J50271_10126678All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage537Open in IMG/M
3300003430|JGI25921J50272_10019965All Organisms → Viruses → Predicted Viral1820Open in IMG/M
3300003430|JGI25921J50272_10113449Not Available571Open in IMG/M
3300003497|JGI25925J51416_10068876Not Available894Open in IMG/M
3300003650|SLW30_104939All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes2666Open in IMG/M
3300003653|SLW02_100744All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes3154Open in IMG/M
3300004096|Ga0066177_10109016All Organisms → Viruses → Predicted Viral1067Open in IMG/M
3300004096|Ga0066177_10528167All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage524Open in IMG/M
3300004112|Ga0065166_10053698All Organisms → Viruses → Predicted Viral1347Open in IMG/M
3300005517|Ga0070374_10152316All Organisms → Viruses → Predicted Viral1200Open in IMG/M
3300005517|Ga0070374_10252879Not Available900Open in IMG/M
3300005517|Ga0070374_10465168Not Available633Open in IMG/M
3300005527|Ga0068876_10548210All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage631Open in IMG/M
3300005528|Ga0068872_10210818All Organisms → Viruses → Predicted Viral1105Open in IMG/M
3300005662|Ga0078894_10220799All Organisms → Viruses → Predicted Viral1717Open in IMG/M
3300005662|Ga0078894_10236781All Organisms → Viruses → Predicted Viral1655Open in IMG/M
3300005662|Ga0078894_11118100All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage672Open in IMG/M
3300005662|Ga0078894_11210603Not Available639Open in IMG/M
3300005662|Ga0078894_11434417Not Available575Open in IMG/M
3300006875|Ga0075473_10131223All Organisms → Viruses → Predicted Viral1001Open in IMG/M
3300007363|Ga0075458_10150900Not Available719Open in IMG/M
3300007516|Ga0105050_10242402Not Available1115Open in IMG/M
3300007559|Ga0102828_1075066All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage806Open in IMG/M
3300007708|Ga0102859_1035891All Organisms → Viruses → Predicted Viral1345Open in IMG/M
3300008055|Ga0108970_10348568All Organisms → Viruses → Predicted Viral2532Open in IMG/M
3300008107|Ga0114340_1000593Not Available42788Open in IMG/M
3300008107|Ga0114340_1052952All Organisms → Viruses → Predicted Viral1768Open in IMG/M
3300008107|Ga0114340_1063354All Organisms → Viruses → Predicted Viral2410Open in IMG/M
3300008107|Ga0114340_1135804Not Available928Open in IMG/M
3300008110|Ga0114343_1166704All Organisms → Viruses → Predicted Viral1116Open in IMG/M
3300008113|Ga0114346_1003437Not Available15900Open in IMG/M
3300008113|Ga0114346_1007389Not Available6521Open in IMG/M
3300008114|Ga0114347_1003283Not Available9673Open in IMG/M
3300008116|Ga0114350_1007630Not Available8237Open in IMG/M
3300008116|Ga0114350_1040732All Organisms → Viruses → Predicted Viral1761Open in IMG/M
3300008116|Ga0114350_1074678All Organisms → Viruses → Predicted Viral1144Open in IMG/M
3300008262|Ga0114337_1023661Not Available5699Open in IMG/M
3300008962|Ga0104242_1024824All Organisms → Viruses → Predicted Viral1031Open in IMG/M
3300008996|Ga0102831_1058761All Organisms → Viruses → Predicted Viral1285Open in IMG/M
3300009059|Ga0102830_1065032All Organisms → Viruses → Predicted Viral1094Open in IMG/M
3300009059|Ga0102830_1230229Not Available542Open in IMG/M
3300009082|Ga0105099_10208943All Organisms → Viruses → Predicted Viral1120Open in IMG/M
3300009164|Ga0114975_10061126All Organisms → Viruses → Predicted Viral2207Open in IMG/M
3300009180|Ga0114979_10485496Not Available715Open in IMG/M
3300009194|Ga0114983_1067477Not Available818Open in IMG/M
3300010388|Ga0136551_1065492All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage653Open in IMG/M
3300010965|Ga0138308_197029All Organisms → Viruses → Predicted Viral1016Open in IMG/M
3300011268|Ga0151620_1014079Not Available2827Open in IMG/M
3300012663|Ga0157203_1052419Not Available552Open in IMG/M
3300012665|Ga0157210_1009600All Organisms → Viruses → Predicted Viral1738Open in IMG/M
3300013004|Ga0164293_10863130All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage571Open in IMG/M
3300013005|Ga0164292_10774443All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage608Open in IMG/M
3300013005|Ga0164292_10895560Not Available557Open in IMG/M
3300019784|Ga0181359_1006895All Organisms → Viruses → Predicted Viral3829Open in IMG/M
3300020141|Ga0211732_1201841All Organisms → Viruses → Predicted Viral2679Open in IMG/M
3300020141|Ga0211732_1276589Not Available973Open in IMG/M
3300020141|Ga0211732_1371119Not Available9683Open in IMG/M
3300020151|Ga0211736_10086948Not Available564Open in IMG/M
3300020151|Ga0211736_10785365All Organisms → Viruses → Predicted Viral1824Open in IMG/M
3300020159|Ga0211734_10337103Not Available3753Open in IMG/M
3300020162|Ga0211735_11180347Not Available883Open in IMG/M
3300020541|Ga0208359_1000608Not Available6519Open in IMG/M
3300020549|Ga0207942_1033229Not Available645Open in IMG/M
3300020562|Ga0208597_1060457All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage689Open in IMG/M
3300020572|Ga0207909_1007342All Organisms → Viruses → Predicted Viral2323Open in IMG/M
3300021140|Ga0214168_1026913All Organisms → Viruses → Predicted Viral1525Open in IMG/M
3300021519|Ga0194048_10077093Not Available1304Open in IMG/M
3300021519|Ga0194048_10133461Not Available940Open in IMG/M
3300021961|Ga0222714_10009473Not Available8552Open in IMG/M
3300021961|Ga0222714_10227840All Organisms → Viruses → Predicted Viral1059Open in IMG/M
3300021963|Ga0222712_10396451Not Available840Open in IMG/M
3300023174|Ga0214921_10007473Not Available14563Open in IMG/M
3300023174|Ga0214921_10011400Not Available10810Open in IMG/M
3300023184|Ga0214919_10175712All Organisms → Viruses → Predicted Viral1651Open in IMG/M
3300024343|Ga0244777_10880838Not Available524Open in IMG/M
3300024346|Ga0244775_10014706Not Available7289Open in IMG/M
3300024346|Ga0244775_10611103Not Available884Open in IMG/M
3300024346|Ga0244775_11389334All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage540Open in IMG/M
3300027193|Ga0208800_1039269All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage639Open in IMG/M
3300027278|Ga0208439_1056372Not Available748Open in IMG/M
3300027365|Ga0209300_1019939Not Available1510Open in IMG/M
3300027734|Ga0209087_1185674Not Available808Open in IMG/M
3300027764|Ga0209134_10019962All Organisms → Viruses → Predicted Viral2113Open in IMG/M
3300027769|Ga0209770_10143792Not Available964Open in IMG/M
3300027769|Ga0209770_10387119Not Available519Open in IMG/M
3300027792|Ga0209287_10226448Not Available714Open in IMG/M
3300027805|Ga0209229_10001843Not Available8714Open in IMG/M
3300027836|Ga0209230_10006559Not Available5059Open in IMG/M
3300027892|Ga0209550_10415175Not Available829Open in IMG/M
3300031758|Ga0315907_10215054Not Available1606Open in IMG/M
3300031758|Ga0315907_10393772All Organisms → Viruses → Predicted Viral1118Open in IMG/M
3300031758|Ga0315907_10502186Not Available959Open in IMG/M
3300031787|Ga0315900_11016686Not Available543Open in IMG/M
3300031857|Ga0315909_10590495All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage745Open in IMG/M
3300031963|Ga0315901_10400831All Organisms → Viruses → Predicted Viral1100Open in IMG/M
3300032093|Ga0315902_11273339All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage521Open in IMG/M
3300033992|Ga0334992_0317336Not Available724Open in IMG/M
3300034020|Ga0335002_0225013All Organisms → Viruses → Predicted Viral1147Open in IMG/M
3300034020|Ga0335002_0503890All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage647Open in IMG/M
3300034093|Ga0335012_0183432Not Available1119Open in IMG/M
3300034093|Ga0335012_0409286All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage661Open in IMG/M
3300034102|Ga0335029_0091986All Organisms → Viruses → Predicted Viral2153Open in IMG/M
3300034106|Ga0335036_0869821All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage514Open in IMG/M
3300034121|Ga0335058_0694841Not Available561Open in IMG/M
3300034279|Ga0335052_0178611Not Available1235Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake19.82%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater13.51%
Freshwater, PlanktonEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton10.81%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater7.21%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine7.21%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater6.31%
FreshwaterEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater6.31%
Freshwater And SedimentEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment3.60%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake2.70%
EstuarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine2.70%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water2.70%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment1.80%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater1.80%
Anoxic Zone FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater1.80%
FreshwaterEnvironmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater1.80%
Subglacial FreshwaterEnvironmental → Aquatic → Freshwater → Ice → Glacial Lake → Subglacial Freshwater1.80%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous1.80%
Deep SubsurfaceEnvironmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface1.80%
Lake ChemoclineEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Lake Chemocline0.90%
FreshwaterEnvironmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater0.90%
FreshwaterEnvironmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater0.90%
Pond Fresh WaterEnvironmental → Aquatic → Freshwater → Pond → Unclassified → Pond Fresh Water0.90%
EstuaryHost-Associated → Plants → Leaf → Unclassified → Unclassified → Estuary0.90%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300002161Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USAEnvironmentalOpen in IMG/M
3300002408Freshwater microbial communities from Lake Mendota, WI, sample - 15JUL2010 deep hole epilimnion (Lake Mendota Combined assembly, ASSEMBLY_DATE=20140123)EnvironmentalOpen in IMG/M
3300002835Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)EnvironmentalOpen in IMG/M
3300003413Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DDEnvironmentalOpen in IMG/M
3300003430Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SDEnvironmentalOpen in IMG/M
3300003497Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.DNEnvironmentalOpen in IMG/M
3300003650Subglacial freshwater microbial communities from Lake Whillans, Antarctica - 3.0 micron filterEnvironmentalOpen in IMG/M
3300003653Subglacial freshwater microbial communities from Lake Whillans, Antarctica - 0.2 micron filterEnvironmentalOpen in IMG/M
3300004096Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (version 2)EnvironmentalOpen in IMG/M
3300004112Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 2)EnvironmentalOpen in IMG/M
3300005517Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (version 4)EnvironmentalOpen in IMG/M
3300005527Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaGEnvironmentalOpen in IMG/M
3300005528Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaGEnvironmentalOpen in IMG/M
3300005662Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)EnvironmentalOpen in IMG/M
3300006875Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_>0.8_DNAEnvironmentalOpen in IMG/M
3300007363Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_<0.8_DNAEnvironmentalOpen in IMG/M
3300007516Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-01EnvironmentalOpen in IMG/M
3300007559Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.541EnvironmentalOpen in IMG/M
3300007708Estuarine microbial communities from the Columbia River estuary - metaG 1371B-02EnvironmentalOpen in IMG/M
3300008055Metatranscriptomes of the Eelgrass leaves and roots. Combined Assembly of Gp0128390, Gp0128391, Gp0128392, and Gp0128393Host-AssociatedOpen in IMG/M
3300008107Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NAEnvironmentalOpen in IMG/M
3300008110Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-3-NAEnvironmentalOpen in IMG/M
3300008113Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NAEnvironmentalOpen in IMG/M
3300008114Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-C-NAEnvironmentalOpen in IMG/M
3300008116Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NAEnvironmentalOpen in IMG/M
3300008262Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-C-NAEnvironmentalOpen in IMG/M
3300008962Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007_MT5EnvironmentalOpen in IMG/M
3300008996Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.747EnvironmentalOpen in IMG/M
3300009059Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.703EnvironmentalOpen in IMG/M
3300009082Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 1-3cm May2015EnvironmentalOpen in IMG/M
3300009164Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaGEnvironmentalOpen in IMG/M
3300009180Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaGEnvironmentalOpen in IMG/M
3300009194Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 RTEnvironmentalOpen in IMG/M
3300010388Freshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland - JEBV, may 2015EnvironmentalOpen in IMG/M
3300010965Microbial communities from Lake Cadagno chemocline, Switzerland. Combined Assembly of Gp0156211, Gp0156621EnvironmentalOpen in IMG/M
3300011268Sub-surface freshwater microbial communities from San Francisco Estuary Delta, California, USA . Combined Assembly of Gp0173482, Gp0175554, Gp0175555EnvironmentalOpen in IMG/M
3300012663Freshwater microbial communities from Indian River, Ontario, Canada - S50EnvironmentalOpen in IMG/M
3300012665Freshwater microbial communities from Talbot River, Ontario, Canada - S11EnvironmentalOpen in IMG/M
3300013004Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaGEnvironmentalOpen in IMG/M
3300013005Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES117 metaGEnvironmentalOpen in IMG/M
3300019784Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.DEnvironmentalOpen in IMG/M
3300020141Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1EnvironmentalOpen in IMG/M
3300020151Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1EnvironmentalOpen in IMG/M
3300020159Freshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1EnvironmentalOpen in IMG/M
3300020162Freshwater lake microbial communities from Lake Erken, Sweden - P4710_201 megahit1EnvironmentalOpen in IMG/M
3300020541Freshwater microbial communities from Lake Mendota, WI - 26AUG2009 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300020549Freshwater microbial communities from Lake Mendota, WI - 12OCT2012 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300020562Freshwater microbial communities from Lake Mendota, WI - 05MAY2012 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300020572Freshwater microbial communities from Lake Mendota, WI - 05MAY2010 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300021140Freshwater microbial communities from Lake Mendota, WI - Practice 29OCT2010 epilimnionEnvironmentalOpen in IMG/M
3300021519Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L222-5mEnvironmentalOpen in IMG/M
3300021961Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3DEnvironmentalOpen in IMG/M
3300021963Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657DEnvironmentalOpen in IMG/M
3300023174Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505EnvironmentalOpen in IMG/M
3300023184Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503EnvironmentalOpen in IMG/M
3300024343Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fractionEnvironmentalOpen in IMG/M
3300024346Whole water sample coassemblyEnvironmentalOpen in IMG/M
3300027193Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.541 (SPAdes)EnvironmentalOpen in IMG/M
3300027278Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.703 (SPAdes)EnvironmentalOpen in IMG/M
3300027365Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 RT (SPAdes)EnvironmentalOpen in IMG/M
3300027734Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027764Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MLB.SN (SPAdes)EnvironmentalOpen in IMG/M
3300027769Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes)EnvironmentalOpen in IMG/M
3300027792Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 1-3cm May2015 (SPAdes)EnvironmentalOpen in IMG/M
3300027805Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)EnvironmentalOpen in IMG/M
3300027836Freshwater and sediment microbial communities from Lake Ontario - Sta 18 epilimnion Metagenome (SPAdes)EnvironmentalOpen in IMG/M
3300027892Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (SPAdes)EnvironmentalOpen in IMG/M
3300031758Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123EnvironmentalOpen in IMG/M
3300031787Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114EnvironmentalOpen in IMG/M
3300031857Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125EnvironmentalOpen in IMG/M
3300031963Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA116EnvironmentalOpen in IMG/M
3300032093Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA117EnvironmentalOpen in IMG/M
3300033992Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035EnvironmentalOpen in IMG/M
3300034020Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2015-rr0055EnvironmentalOpen in IMG/M
3300034093Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jun2014-rr0072EnvironmentalOpen in IMG/M
3300034102Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112EnvironmentalOpen in IMG/M
3300034106Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131EnvironmentalOpen in IMG/M
3300034121Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19May2015-rr0174EnvironmentalOpen in IMG/M
3300034279Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2014-rr0163EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI24766J26685_10002192113300002161Freshwater And SedimentMSNFYSILSERHPDGDFNEMDLWEAIADSEGLELNEIMDGDLTEYL*
JGI24766J26685_10004583183300002161Freshwater And SedimentMNNLYSILSERHPDGDFNEMDLWEAIAXSEGLELNEIMDGDLTEYL*
B570J29032_10952735223300002408FreshwaterMSNLYSILAEMYPGGDFNETDLWEAIAEAEGVDVNEIMDGDLTEYL*
B570J29032_10975143853300002408FreshwaterMDNLYSILSERHPDGDFNEMDLWEAIADSEGLELYEIMDGDLTEYL*
B570J40625_10004634543300002835FreshwaterMDNLYSILSEWYPDGNYSEQELWDAIAESQGVDVYSIMDGDLTEYL*
B570J40625_10021327273300002835FreshwaterMDNLYSILSERHPDGDFNEMDLWEAIADSEGLELNEIMDGDLTEYL*
JGI25922J50271_1012667813300003413Freshwater LakeWTTMSNLYSILSEWYPDGNYSEAELWDAVAESQGVDVYSIMDGDLTDYL*
JGI25921J50272_1001996543300003430Freshwater LakeMDNLYSILSERHPEGDFNEMDLWEAIADSEGLELNEIMDGDLTEYL*
JGI25921J50272_1011344913300003430Freshwater LakeMSNLYSILSEWYPDGNYSEAELWDAVAESQGVDVYSIMDGDLTDYL*
JGI25925J51416_1006887633300003497Freshwater LakeMSNLYSILAEWYPDGNYSEAELWDAVAESEGVDVYSIMDGDLTDYL*
SLW30_10493963300003650Subglacial FreshwaterMNRSLEAVLSDWYPEGDFTEEELWDAIAESEGVDLNEIMDGNLEDYL*
SLW02_10074483300003653Subglacial FreshwaterMNSLNTILADWYPDGNFTEDELWYAIAESEGVDPCEIMDGDITDYL*
Ga0066177_1010901613300004096Freshwater LakeMNSLYSILAEWYPDGNYSEEELWDAIAESQGVDVYSIMDGDLTDYL*FLSHQ*
Ga0066177_1052816713300004096Freshwater LakeTRGGLLMNNLYSILSERHPDGDFNEMDLWEAIADSEGLELNEIMDGDLTEYL*
Ga0065166_1005369833300004112Freshwater LakeMDNLYSILAEWYPDGNYSEQELWDAIAESEGVDVYSIMDGDLTEYL*
Ga0070374_1015231623300005517Freshwater LakeMNSLYSILAEWYPDGNYSEEELWDAIAESQGVDVYSIMDGDLTDYL*
Ga0070374_1025287933300005517Freshwater LakeMSNLYSILAEWYPDGNYSEAELWDAVAESEGVDVYSIMDGDLTEYL*
Ga0070374_1046516823300005517Freshwater LakeMSNLYSILAESHPDGDFTESDLWDAIAESEGVDVYSIMDGDLTDYL*
Ga0068876_1054821033300005527Freshwater LakeMSNLYSILSERHPDGDFNEMDLWEAIADSEGLELNEIMDGDLTEYL*
Ga0068872_1021081833300005528Freshwater LakeMDNLYSILAELHPNGDFTESDLWEAIAESHGVDVNEIMDQDLTEYL*
Ga0078894_1022079933300005662Freshwater LakeMENLYSILSERHPDGDFSEMDLWEAIADSEGLELNEIMDGDLTEYL*
Ga0078894_1023678163300005662Freshwater LakeMNNLYSILSERHPDGDFNEMDLWEAIADSEGLELNEIMDGDLTEYL*
Ga0078894_1111810013300005662Freshwater LakeMENLYSILSERHPDGDFNEMDLWEAIADSEGLELNEIMDGDLTDYL*
Ga0078894_1121060323300005662Freshwater LakeMNNLYSILSERHPDGNFGEMDLWEAIADSEGLELYEIMDGDLTEYL*
Ga0078894_1143441723300005662Freshwater LakeMSNLYSILQEMHPGGDFNEFELWEAIAEAEGVDVYDIMDGDLTEYL*
Ga0075473_1013122313300006875AqueousGYHRRTTMSNVYEILAEWHPEGDFTESDLWDAIAESEGVDVSEIMDGDLTDYL*
Ga0075458_1015090013300007363AqueousMLGYHRWTTMSNLYSILSERHPDGDFNEMDLWEAIADSEGLELNEIMDGDLTEYL*
Ga0105050_1024240243300007516FreshwaterMKMNRSLTTILSDWYPEGDFTEEELWDAIAESEGVDLNEIMDGNL
Ga0102828_107506623300007559EstuarineMSNLYSILAEWHPDGDFNESDLWDAIAESEGVDVSSIMDGDLTDYL*
Ga0102859_103589123300007708EstuarineMSNLYSILSEWYPDGNYSEQELWDAVAESQGVDVYSIMDGDLTDYL*
Ga0108970_1034856833300008055EstuaryMNNLYSILSERHPDGDFGEMDLWEAIADSEGLELYEIMDGDLTEYL*
Ga0114340_1000593233300008107Freshwater, PlanktonMDNLYSILAERHPDGDFNEMDLWEAIADSEGLELNEIMDGDLTEYL*
Ga0114340_105295233300008107Freshwater, PlanktonMDNLYSILSERHPDGDFSEMDLWEAIADSEGLELNEIMDGDLTEYL*
Ga0114340_106335453300008107Freshwater, PlanktonMNNLYSILSERHPEGDFNEMDLWEAIADSEGLELYEIMDGDLTEYL*
Ga0114340_113580433300008107Freshwater, PlanktonMSNLYSILAEWYPDGNYSEQELWDAVAESQGVDVYSIMDGDLTDYL*
Ga0114343_116670443300008110Freshwater, PlanktonMENLYSILSERHPDGDFGEMDLWEAIADSEGLELNEIMDGDLTEYL*
Ga0114346_1003437173300008113Freshwater, PlanktonMSNLYSILSEMHPDGNFNEMDLWDAIAEAEGVDVNEIMDGDLTEYL*
Ga0114346_1007389123300008113Freshwater, PlanktonMSNLYSILQEMHPSGDFTEADLWEAIAESEGVDVYEIMDGDLTEYL*
Ga0114347_1003283213300008114Freshwater, PlanktonMNNLYSILSERYPEGDFNEMDLWEAIADSEGLELYEIMDGDLTEYL*
Ga0114350_100763063300008116Freshwater, PlanktonMDNLYSILSEWYPEGEFSESELWDAIAESEGVEVSEIMDGDLIEYL*
Ga0114350_104073263300008116Freshwater, PlanktonMSNLYSILSEWHPDGDFTEEDLWEAIAESEGVDMNSIMD
Ga0114350_107467843300008116Freshwater, PlanktonMSDLYSILATWYPDGNYTEAELWDAIAEIEGVSVSEIMDGDLTEYL*
Ga0114337_102366113300008262Freshwater, PlanktonMENLYSILSERHPDGDFSEMDLWDAIADSEGLELNEIMDGDLTEYL*
Ga0104242_102482433300008962FreshwaterMDNLYSILSTWYPEGDYTEAELWDAIAESEGLDVSEIMDGDLTEYL*
Ga0102831_105876143300008996EstuarineMLGYHRRTTMNNLYSILAEMHPNGDFNEADLWDAIAESEGVDVYEIMDGDLTEYL*
Ga0102830_106503213300009059EstuarineMSNLYSILSQWYPDGNYSEQELWDAIAEVEGVDVYSIMDGDLTEYL*
Ga0102830_123022923300009059EstuarineMSNLYSILQEMHPKGDFNEFELWEAIAESEGVDVYEIMDGDLTEYL*
Ga0105099_1020894323300009082Freshwater SedimentMDNLYSILSTWYPEGDYTEAELWDAIAESEGVDVYEIMDGDLTDYL*
Ga0114975_1006112633300009164Freshwater LakeMDDLYSILSEWYPDGNYSEQELWDAIAESQGVDVYSIMDGDLTEYL*
Ga0114979_1048549623300009180Freshwater LakeMSNLYSILAEWYPDGNYSESELWDAVAESEGVDVHSIMDGDLTDYL*
Ga0114983_106747723300009194Deep SubsurfaceMNNLYSILSDWYPDGNYTEAELWDAIAELEGVSVSEIMDGDLTEYL*
Ga0136551_106549213300010388Pond Fresh WaterQNGGMMSDLYSTLAEWYPDGNYTEADLWEAIAEVHGVDVNEIMDGDLVEYL*
Ga0138308_19702923300010965Lake ChemoclineMNSLYSILAEWYPDGNYSEAELWDAVAESQGVDVYSIMDGDLTDYL*
Ga0151620_101407923300011268FreshwaterMNNLYSILAELHPAGDFTEADLWEAIAESQGVDVNEIMDQDLTEYL*
Ga0157203_105241923300012663FreshwaterMSNLYSILAEWYPDGNYSEAELWDAVAESEGLDVYSIMDGDLTDYL*
Ga0157210_100960013300012665FreshwaterMSNLYSILQEMHPEGDFNESDLWEAIAEAEGVDVNEIMDGDLTEYL*
Ga0164293_1086313013300013004FreshwaterMENLYSILSERHPDGDFSEMDLWEAIADSEGLELNEIMDGDLTDYL*
Ga0164292_1077444313300013005FreshwaterLYSILSERHPDGDFNEMDLWEAIADSEGLELNEIMDGDLTEYL*
Ga0164292_1089556023300013005FreshwaterMDNLYSILSERHPEGDFNEMDLWEAIADSEGLELYEIMDGDLTDYL*
Ga0181359_100689573300019784Freshwater LakeMSNLYSILAEWYPDGNYSEAELWDAVAESEGVDVYSIMDGDLTDYL
Ga0211732_1201841103300020141FreshwaterMSNLYSILAEWYPDGNYSEAELWDAVAESQGVDVYSIMDGDLTDYL
Ga0211732_127658923300020141FreshwaterMSNLYSILAEWYPDGNYSEQELWDAVAESQGVDVYSIMDGDLTDYL
Ga0211732_137111933300020141FreshwaterMSNLYSILSERHPEGDFNEMDLWEAIADSEGLELNEIMDGDLTEYL
Ga0211736_1008694833300020151FreshwaterLSERHPEGDFNEMDLWEAIADSEGLELNEIMDGDLTEYL
Ga0211736_1078536553300020151FreshwaterMSNLYSILSTWYPDGDYTEAELWDAIAEVEGVSVSEIMDGDLTEYL
Ga0211734_1033710353300020159FreshwaterMSNLYSILSEWYPDGNYSEAELWDAIAESQGVDVYSIMDGDLTEYL
Ga0211735_1118034713300020162FreshwaterKMSNLYSILAEWYPDGNYSEAELWDAVAESQGVDVYSIMDGDLTDYL
Ga0208359_1000608153300020541FreshwaterMDNLYSILSEWYPDGNYSEQELWDAIAESQGVDVYSIMDGDLTEYL
Ga0207942_103322913300020549FreshwaterRRNTMSNLYSILAEMYPGGDFNETDLWEAIAEAEGVDVNEIMDGDLTEYL
Ga0208597_106045733300020562FreshwaterMSNLYSILAEWYPDGNYSEAELWDAVAESEGVDVYSIMDGDLTEYL
Ga0207909_100734233300020572FreshwaterMDNLYSILSERHPDGDFNEMDLWEAIADSEGLELNEIMDGDLTEYL
Ga0214168_102691333300021140FreshwaterMSNLYSILSTWYPEGDFNEAELWDAIAENEGVDVNEIMDGDLTDYL
Ga0194048_1007709313300021519Anoxic Zone FreshwaterMSNLYSILAEWYPDGNYSEQELWDAIAESQGVDVYSIMDGDLTEYL
Ga0194048_1013346133300021519Anoxic Zone FreshwaterYSILADWYPDGNYSEQELWDAIAESQGVDVYSIMDGDLTEYL
Ga0222714_1000947373300021961Estuarine WaterMSNLYTILAEMHPSGDFTESDLWEAIAESEGVDVYEIIDGDLTEYL
Ga0222714_1022784033300021961Estuarine WaterMNNLYSILSERHPDGDFNEMDLWEAIADSEGLELNEIMDGDLTEYL
Ga0222712_1039645133300021963Estuarine WaterMNSLYSILAEWYPDGNYSEEELWDAIAESQGVDVYSIMDGDLTDYL
Ga0214921_10007473133300023174FreshwaterMMSNLYSILSEWYPDGNYSEAELWDAVAESEGVDVYSIMDGDLTEYL
Ga0214921_10011400223300023174FreshwaterMDNLYSILSTWYPEGDYTEAELWDAIAESEGLDVSEIMDGDLTEYL
Ga0214919_1017571213300023184FreshwaterMSNLYSILAEWYPDGNYSEAELWEAVAESEGVDVYSIMDGDLTEYL
Ga0244777_1088083823300024343EstuarineMNNLYSILAEMHPNGDFNEADLWDAIAESEGVDVYEIMDGDLTEYL
Ga0244775_1001470663300024346EstuarineMNNLYSILSERHPDGDFNEMDLWEAIAGSEGLELNEIMDGDLTEYL
Ga0244775_1061110333300024346EstuarineMNNLYSILSERHPDGNFGEMDLWEAIADSEGLELYEIMDGDLTEYL
Ga0244775_1138933423300024346EstuarineMSNLYSILAEWHPDGDFNESDLWDAIAESEGVDVSSIMDGDLTDYL
Ga0208800_103926933300027193EstuarineYTLGYLKESIKMSNLYSILAEWYPDGNYSEAELWDAVAESEGVDVYSIMDGDLTEYL
Ga0208439_105637223300027278EstuarineMNNLYSILSERHPDGDFGEMDLWEAIADSEGLELYEIMDGDLTEYL
Ga0209300_101993963300027365Deep SubsurfaceMNNLYSILSDWYPDGNYTEAELWDAIAELEGVSVSEIMDGDLTEYL
Ga0209087_118567413300027734Freshwater LakeKMSNLYSILAEWYPDGNYSEAELWDAVAESEGVDVYSIMDGDLTDYL
Ga0209134_1001996253300027764Freshwater LakeMSNLYSILSEWYPDGNYSEAELWDAVAESEGVDVYSIMDGDLTEYL
Ga0209770_1014379233300027769Freshwater LakeMSNLYSILSEWYPDGNYSEAELWDAVAESQGVDVYSIMDGDLTDYL
Ga0209770_1038711923300027769Freshwater LakeMDNLYSILSERHPEGDFNEMDLWEAIADSEGLELNEIMDGDLTEYL
Ga0209287_1022644813300027792Freshwater SedimentMDNLYSILSTWYPEGDYTEAELWDAIAESEGVDVYEIMDGDLTDYL
Ga0209229_1000184393300027805Freshwater And SedimentMSNFYSILSERHPDGDFNEMDLWEAIADSEGLELNEIMDGDLTEYL
Ga0209230_1000655983300027836Freshwater And SedimentMSNVYEILAEWHPSGDFTESDLWDAIAESEGVDVYSIMDGDLTDYL
Ga0209550_1041517523300027892Freshwater LakeMSNLYSILAESHPDGDFTESDLWDAIAESEGVDVYSIMDGDLTDYL
Ga0315907_1021505453300031758FreshwaterMDNLYSILSEWYPEGEFSESELWDAIAESEGVEVSEIMDGDLIEYL
Ga0315907_1039377233300031758FreshwaterMSDLYSILATWYPDGNYTEAELWDAIAEIEGVSVSEIMDGDLTEYL
Ga0315907_1050218633300031758FreshwaterMNNLYSILSERYPEGDFNEMDLWEAIADSEGLELYEIMDGDLTEYL
Ga0315900_1101668623300031787FreshwaterMENLYSILSERHPDGDFGEMDLWEAIADSEGLELNEIMDGDLTEYL
Ga0315909_1059049523300031857FreshwaterMDNLYSILSERHPDGDFSEMDLWEAIADSEGLELNEIMDGDLTEYL
Ga0315901_1040083143300031963FreshwaterMNNLYSILSERHPEGDFNEMDLWEAIADSEGLELYEIMDGDLTEYL
Ga0315902_1127333923300032093FreshwaterYQRSNTKMNSLYSILAEWYPDGNYSEEELWDAIAESQGVDVYSIMDGDLTDYL
Ga0334992_0317336_124_2883300033992FreshwaterMATRGGLLMDNLYSILSERHPDGDFNEMDLWEAIADSEGLELNEIMDGDLTEYL
Ga0335002_0225013_948_10883300034020FreshwaterMDNLYSILSERHPDGDFNEMDLWEAIADSEGLDLNEIMDGDLTEYL
Ga0335002_0503890_95_2773300034020FreshwaterMLTTWTHGYHRRTMMSNLYSILSERHPDGDFNEMDLWEAIADSEGLELYEIMDGDLTEYL
Ga0335012_0183432_1_1323300034093FreshwaterMDNLYSILSERHPDGDFNEMDLWEAIADSEGLELNEIMDGDLTE
Ga0335012_0409286_533_6613300034093FreshwaterYSILSERHPDGDFNEMDLWEAIADSEGLELNEIMDGDLTEYL
Ga0335029_0091986_1856_20233300034102FreshwaterMLGYHRRTTMNNLYSILSERHPDGNFGEMDLWEAIADSEGLELYEIMDGDLTEYL
Ga0335036_0869821_62_2023300034106FreshwaterMDNLYSILSERHPDGDFNEMDLWEAIADSEGLELYEIMDGDLTEYL
Ga0335058_0694841_442_5613300034121FreshwaterMDNLYSILSERHPDGDFNEMDLWEAIADSEGLELNEIMDG
Ga0335052_0178611_1106_12343300034279FreshwaterMDNLYSILSERHPDGDFNEMDLWEAIADSEGLELNEIMDGDLT


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