Scaffold Ga0214921_10007126

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10007126
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15016
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (87.18%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Associated Families: 12

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F000980	Metagenome / Metatranscriptome	814	Y
F001043	Metagenome / Metatranscriptome	794	Y
F001125	Metagenome / Metatranscriptome	769	Y
F002598	Metagenome / Metatranscriptome	544	Y
F003379	Metagenome / Metatranscriptome	490	Y
F004051	Metagenome / Metatranscriptome	455	Y
F017829	Metagenome / Metatranscriptome	238	Y
F020171	Metagenome / Metatranscriptome	225	Y
F029434	Metagenome / Metatranscriptome	188	Y
F045755	Metagenome / Metatranscriptome	152	N
F101047	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000712612	F000447	AGGAGG	MGYVEIFRIDEEGAGWVDLSEATPNELLDLEIGLFQEGAL
Ga0214921_1000712613	F029434	AGG	MKKYTFGVWLDIDAEDEEMALSLFDSVVKHTFVSDSYCFEWKEVADEIAI
Ga0214921_1000712616	F002598	AGAAGG	MATKLYTIESLLVGQNYRSRNRHFFGEIVSAKPRPEIWYGDKTEAFLIEVRAGGLRNKFATVAVKVGE
Ga0214921_1000712617	F101047	AGGA	MKELYTQILECETCNGQGWQFFGNETDYDVEACDCNPLGFFQENK
Ga0214921_1000712618	F045755	AGGAG	MSEIAGMWICDNCDTLAIVSVATDTIVIQQCECVTKERETNV
Ga0214921_1000712627	F004051	GAGG	MTIEGKLYQIGDLFTTLKSKRTGVIKEIHPQASGSVRVLLEMPSKETRWTSVSAKTLLGA
Ga0214921_1000712629	F017829	AGG	MANRYRVEIYDANKANDVTIYSEQGVDKEYLTELVFSNLNKFSGKINAYVFDNVKKKKITAMFLDETIVNFNKQMLSKASRIDFGS
Ga0214921_1000712632	F000980	N/A	MTKYQKYTWVCTSDCDALIEYTFKDGYGWPAGVMDLTCRCGTSCTLLSVEDATIPYTDTPLTKEEPMETTVTTSPIPDTYNPNLLVTYKVIRGYSDAEYATDKVASLEWDLHNGRQSQKTVHVLQGKIDTVKDIITEAYEDSEDKDTLRAIAEALSIELVREVLFTATLEVSGTYTYNILDSDYELDLDSEVTDALYADSNNGNIQIDDTEVCHVREA
Ga0214921_1000712634	F001043	AGGAG	MSDYKDGFDDGYKFAREELMERLSEIDINDIDSWILDRLCEMIEGGKL
Ga0214921_1000712636	F001125	GGCGG	MGDRANFGFKDRKGDTIFLYGHWAGHRMLENLANAVEQARPRWTDESYATRICVSQLVNEEWASETGWGLSVNTLGDNEHKVPVINWAAKTFTLMEEDLQTEVFSTSLDAFVSKYSSQPSMV
Ga0214921_1000712638	F020171	GAGG	MSDPYGIITFYRKGGSIMAELFIDTIAEHITGAMIQEIAEDLYENWSNANCDEGPEYAERQFMAYASDELKQQYNEYYGYIEGDEFLL
Ga0214921_100071266	F003379	N/A	MKKIYAFLTIIATAILSGVALSKFLKWAGQQEDIFDFDLNEEIDNEQF