Scaffold Ga0214921_10006379

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10006379
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16205
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (87.18%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 11 (100.00%)
• Associated Families: 11

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002245	Metagenome / Metatranscriptome	578	Y
F002598	Metagenome / Metatranscriptome	544	Y
F003379	Metagenome / Metatranscriptome	490	Y
F015208	Metagenome / Metatranscriptome	256	Y
F017829	Metagenome / Metatranscriptome	238	Y
F020168	Metagenome / Metatranscriptome	225	Y
F026557	Metagenome / Metatranscriptome	197	Y
F030095	Metagenome / Metatranscriptome	186	N
F050376	Metagenome / Metatranscriptome	145	Y
F051930	Metagenome / Metatranscriptome	143	Y
F085710	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_100063791	F030095	AGG	VAAQKNFEVDQNTTFTFEVQYLDEDQTPIQLNFHTAKLQVRDTQGGKKLAFTLTEQDGIHISPTEGKLKISISSDRTNKMFYPKSAYDLVIID
Ga0214921_1000637911	F003379	AGGAG	MKKIWAVLILIATAILSGAMLSKFLNWAGKEEIFDFDLNEDIDNEELLLLL
Ga0214921_1000637917	F085710	AGGTGG	MDYNDYYDDIYLEIYEEFGADSVSNPAYAEQLAKDKGVR
Ga0214921_1000637921	F050376	AGAAGG	MNLEEYKAHVEAQRKASLLKAIATMSEANDKMSSLFNTKEAD
Ga0214921_1000637927	F002598	AGAAGG	MATKLYTIESLLVGQNYRSRNRHFSGEIVSARPAHPAIWYGDKIEAFLIEVNAGGLRNKFATVAVKVGE
Ga0214921_1000637928	F026557	GAGG	MINSVMRIDCSECNSTGLIFFGDNNNFDVETCDCDFGKEQDSFFN
Ga0214921_1000637929	F015208	GGA	MYKITVAYDEQPAHATFSYGDELQAHTEFAKYVDWGFADKFATVNLYTPSGKCYTKLFYREGRKVVIK
Ga0214921_1000637932	F020168	GAG	MYDVIGSLIGIILICFLCSPIVLAIYMWRGMKIDNDHDGKDDVPYRWEKK
Ga0214921_1000637933	F002245	AGG	MSNLMKVPHTVVFEAIIDLDKIPANLLPTLIALDQKSIEQMCKEATLHALGMSNVLPLANENNTWAEVTIAESN
Ga0214921_1000637938	F017829	AGG	MANRFRVEIYDANKANDITIYSDQGVDKEYLIELVFSNIKNFSGKINAYVFDNVKKKKTTAMFLDESTVEFNKNIIRNATKVGLGS
Ga0214921_100063795	F051930	AGGAG	MRVQYVSTYISMSEEGLVEKLLCPVDQSILFSNQNLLDEIYLYCLECDYKKDLGLTTYKKIVDDVNKNV